Wall clock time and date at job start Mon Mar 30 2020 03:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.34779 * 119.99943 * 275.00054 * 12 2 1 14 14 O 1.21540 * 120.00119 * 0.02562 * 13 12 2 15 15 C 1.47888 * 119.99866 * 180.02562 * 13 12 2 16 16 C 1.40001 * 120.44949 * 180.02562 * 15 13 12 17 17 C 1.38264 * 118.38130 * 179.97438 * 16 15 13 18 18 C 1.39518 * 119.18771 * 0.02562 * 17 16 15 19 19 C 1.43202 * 119.58875 * 179.97438 * 18 17 16 20 20 N 8.96341 * 108.81293 * 113.44435 * 2 1 3 21 21 N 1.32841 * 120.83162 * 0.02562 * 18 17 16 22 22 C 1.31434 * 121.77092 * 359.65753 * 21 18 17 23 23 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 25 25 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 0.96997 * 120.00208 * 95.00345 * 12 2 1 28 28 H 1.08007 * 120.81169 * 0.02562 * 16 15 13 29 29 H 1.07995 * 120.40838 * 180.02562 * 17 16 15 30 30 H 1.08007 * 119.63482 * 180.31132 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8575 1.1611 2.4118 15 6 2.6405 -0.7150 3.5645 16 6 2.7773 -0.0259 4.7755 17 6 3.2420 -0.7195 5.8776 18 6 3.5570 -2.0723 5.7469 19 6 4.0395 -2.7989 6.8827 20 7 4.4205 -3.3756 7.7841 21 7 3.4160 -2.6948 4.5818 22 6 2.9716 -2.0713 3.5135 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 0.7088 1.1611 -3.4845 27 1 2.2490 -1.6316 1.1527 28 1 2.5252 1.0219 4.8472 29 1 3.3596 -0.2202 6.8279 30 1 2.8657 -2.6124 2.5848 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359931833.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:20 Heat of formation + Delta-G solvation = 9.181719 kcal Electronic energy + Delta-G solvation = -16265.727007 eV Core-core repulsion = 13446.497760 eV Total energy + Delta-G solvation = -2819.229246 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.77802 -40.14449 -37.71627 -36.76704 -34.47492 -33.79134 -32.98048 -30.67982 -27.32021 -26.67758 -24.82741 -23.23852 -21.51510 -20.54626 -19.56071 -18.02096 -17.73891 -16.90255 -16.23053 -16.14924 -15.92075 -15.54118 -15.30630 -14.58308 -14.43744 -14.29275 -13.98509 -13.95723 -13.69384 -13.54951 -12.95516 -12.86027 -12.72728 -12.22717 -12.11029 -11.25487 -11.11342 -11.06221 -10.69402 -10.55374 -10.38139 -9.77771 -8.14892 -6.31693 -0.90510 0.06499 1.32808 1.36599 1.48975 1.49938 1.59810 2.14380 2.24800 2.34320 2.53069 2.81636 3.16678 3.44930 3.60419 3.78273 3.93979 3.94714 4.52083 4.71654 4.82459 4.96567 5.00264 5.12733 5.27112 5.45380 5.59890 5.70971 5.90932 6.12501 6.15139 6.49719 6.75102 6.87186 7.31579 7.46701 8.91276 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.040541 B = 0.004628 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.500290 B = 6048.261861 C = 6550.996934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.270 3.730 3 H 0.006 0.994 4 C -0.547 4.547 5 H 0.077 0.923 6 C 0.017 3.983 7 N -0.917 5.917 8 Si 0.969 3.031 9 H -0.279 1.279 10 H -0.259 1.259 11 H -0.287 1.287 12 N -0.693 5.693 13 C 0.545 3.455 14 O -0.584 6.584 15 C -0.157 4.157 16 C -0.015 4.015 17 C -0.099 4.099 18 C 0.197 3.803 19 C 0.289 3.711 20 N -0.418 5.418 21 N -0.468 5.468 22 C 0.148 3.852 23 H 0.042 0.958 24 H 0.016 0.984 25 H 0.067 0.933 26 H 0.265 0.735 27 H 0.406 0.594 28 H 0.167 0.833 29 H 0.190 0.810 30 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.447 -4.629 12.573 13.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.167 3.833 3 H 0.024 0.976 4 C -0.585 4.585 5 H 0.095 0.905 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.794 3.206 9 H -0.205 1.205 10 H -0.183 1.183 11 H -0.213 1.213 12 N -0.342 5.342 13 C 0.332 3.668 14 O -0.466 6.466 15 C -0.163 4.163 16 C -0.041 4.041 17 C -0.121 4.121 18 C 0.060 3.940 19 C -0.028 4.028 20 N -0.095 5.095 21 N -0.178 5.178 22 C -0.012 4.012 23 H 0.061 0.939 24 H 0.035 0.965 25 H 0.085 0.915 26 H 0.074 0.926 27 H 0.243 0.757 28 H 0.185 0.815 29 H 0.208 0.792 30 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 3.955 -5.481 13.766 15.336 hybrid contribution -0.186 0.571 -1.464 1.582 sum 3.769 -4.911 12.302 13.772 Atomic orbital electron populations 1.21920 0.98052 0.99714 0.99826 1.18417 0.91266 0.92175 0.81437 0.97642 1.21562 1.32579 1.13701 0.90664 0.90502 1.25743 0.94856 0.95557 1.02215 1.70042 1.36920 1.23937 1.24590 0.85388 0.77674 0.79327 0.78217 1.20514 1.18285 1.21258 1.46246 1.64118 1.14351 1.09510 1.18509 0.78167 0.86374 0.83792 1.90738 1.52932 1.17350 1.85581 1.21267 1.03453 0.96311 0.95231 1.21933 0.90789 1.01851 0.89562 1.22254 0.96532 0.91870 1.01475 1.16612 0.99058 0.90548 0.87791 1.24962 0.93196 0.92518 0.92119 1.81281 1.08540 1.07844 1.11842 1.67559 1.12572 1.39184 0.98526 1.23162 0.91041 0.90204 0.96841 0.93901 0.96518 0.91474 0.92583 0.75693 0.81536 0.79247 0.79469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.46 9.26 71.98 0.67 -5.80 16 2 C 0.27 13.01 2.56 44.24 0.11 13.12 16 3 H 0.01 0.32 7.58 -2.38 -0.02 0.31 16 4 C -0.55 -27.17 8.73 25.60 0.22 -26.94 16 5 H 0.08 3.51 7.74 -2.91 -0.02 3.49 16 6 C 0.02 0.85 5.30 84.66 0.45 1.30 16 7 N -0.92 -50.54 11.32 21.45 0.24 -50.29 16 8 Si 0.97 40.26 29.54 68.60 2.03 42.29 16 9 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 10 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 11 H -0.29 -11.92 7.11 99.48 0.71 -11.21 16 12 N -0.69 -25.64 5.02 -448.95 -2.25 -27.89 16 13 C 0.55 19.17 7.75 86.80 0.67 19.84 16 14 O -0.58 -25.44 16.07 -3.84 -0.06 -25.50 16 15 C -0.16 -3.83 5.89 -19.94 -0.12 -3.95 16 16 C -0.01 -0.28 9.70 22.70 0.22 -0.06 16 17 C -0.10 -1.37 9.78 22.58 0.22 -1.15 16 18 C 0.20 3.60 6.58 40.55 0.27 3.87 16 19 C 0.29 5.78 15.52 88.33 1.37 7.15 16 20 N -0.42 -9.93 18.54 19.00 0.35 -9.58 16 21 N -0.47 -10.00 10.26 -188.24 -1.93 -11.93 16 22 C 0.15 3.11 10.70 85.11 0.91 4.02 16 23 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 24 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.07 3.54 6.07 -2.39 -0.01 3.52 16 26 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 27 H 0.41 12.08 6.59 -92.71 -0.61 11.46 16 28 H 0.17 2.98 7.73 -2.91 -0.02 2.96 16 29 H 0.19 1.17 8.06 -2.91 -0.02 1.15 16 30 H 0.19 3.23 6.41 -2.91 -0.02 3.22 16 Total: -1.00 -65.11 278.61 3.95 -61.16 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: 0.58 Total: 10.34 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: 5.00 Total: 11.41 kcal Atomic # 7 Polarization: -96.10 SS G_CDS: -3.59 Total: -99.69 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.06 Total: -25.50 kcal Atomic # 14 Polarization: 40.26 SS G_CDS: 2.03 Total: 42.29 kcal Total: -65.11 3.95 -61.16 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359931833.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.337 kcal (2) G-P(sol) polarization free energy of solvation -65.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds