Wall clock time and date at job start Mon Mar 30 2020 04:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00130 * 2 1 4 4 H 1.48501 * 109.47190 * 239.99630 * 3 2 1 5 5 H 1.48505 * 109.47181 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47475 * 119.99605 * 3 2 1 7 7 C 1.37880 * 119.99967 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99878 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99739 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47012 * 179.97438 * 9 7 2 11 11 N 1.46502 * 109.47035 * 179.97438 * 10 9 7 12 12 S 1.65603 * 119.99674 * 164.99889 * 11 10 9 13 13 O 1.42096 * 102.99718 * 66.15271 * 12 11 10 14 14 C 1.81396 * 102.99771 * 180.02562 * 12 11 10 15 15 C 1.53002 * 109.47197 * 185.00275 * 14 12 11 16 16 C 1.53000 * 109.47233 * 180.02562 * 15 14 12 17 17 C 1.52997 * 109.47060 * 299.99657 * 16 15 14 18 18 C 1.52999 * 109.47317 * 59.99960 * 17 16 15 19 19 C 1.52997 * 109.47360 * 305.00093 * 14 12 11 20 20 H 0.97002 * 119.99580 * 359.97438 * 1 2 3 21 21 H 1.08996 * 109.47339 * 59.99501 * 9 7 2 22 22 H 1.09003 * 109.47148 * 299.99147 * 9 7 2 23 23 H 1.08996 * 109.47023 * 59.99863 * 10 9 7 24 24 H 1.08994 * 109.46999 * 299.99636 * 10 9 7 25 25 H 0.97004 * 120.00028 * 345.00478 * 11 10 9 26 26 H 1.09002 * 109.47587 * 65.00002 * 14 12 11 27 27 H 1.08992 * 109.47063 * 59.99974 * 15 14 12 28 28 H 1.09004 * 109.46733 * 299.99687 * 15 14 12 29 29 H 1.09002 * 109.47398 * 59.99826 * 16 15 14 30 30 H 1.09001 * 109.47194 * 180.02562 * 16 15 14 31 31 H 1.08996 * 109.47853 * 180.02562 * 17 16 15 32 32 H 1.09002 * 109.47153 * 300.00319 * 17 16 15 33 33 H 1.09000 * 109.47486 * 180.02562 * 18 17 16 34 34 H 1.09002 * 109.46716 * 60.00091 * 18 17 16 35 35 H 1.09002 * 109.47153 * 300.00180 * 19 14 12 36 36 H 1.09001 * 109.47289 * 60.00264 * 19 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5127 -4.9308 0.0012 12 16 2.2983 -6.3406 -0.3699 13 8 3.2107 -6.4916 0.7089 14 6 0.9871 -7.5866 -0.2326 15 6 1.5860 -8.9809 -0.4281 16 6 0.4800 -10.0318 -0.3129 17 6 -0.1652 -9.9435 1.0715 18 6 -0.7641 -8.5492 1.2671 19 6 0.3424 -7.4981 1.1520 20 1 -0.4849 0.8401 0.0004 21 1 0.6247 -2.5570 -0.8896 22 1 0.6241 -2.5567 0.8904 23 1 2.8719 -3.6043 0.8905 24 1 2.8718 -3.6044 -0.8894 25 1 0.5675 -4.9450 0.2188 26 1 0.2318 -7.4051 -0.9973 27 1 2.3412 -9.1624 0.3366 28 1 2.0453 -9.0440 -1.4146 29 1 -0.2750 -9.8501 -1.0779 30 1 0.9068 -11.0251 -0.4517 31 1 -0.9528 -10.6924 1.1539 32 1 0.5898 -10.1251 1.8365 33 1 -1.2234 -8.4861 2.2536 34 1 -1.5191 -8.3676 0.5022 35 1 1.0976 -7.6796 1.9168 36 1 -0.0843 -6.5048 1.2914 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385758053.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:16 Heat of formation + Delta-G solvation = -74.350010 kcal Electronic energy + Delta-G solvation = -15839.125206 eV Core-core repulsion = 13255.258047 eV Total energy + Delta-G solvation = -2583.867159 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.119 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.28708 -35.25488 -34.86365 -32.56608 -30.95179 -30.85225 -28.76015 -24.35461 -22.76227 -22.67944 -20.86953 -19.85821 -17.89058 -16.47040 -16.24126 -15.38236 -14.66808 -14.49046 -14.39715 -14.22963 -13.99623 -13.75496 -12.79510 -12.69597 -12.34225 -12.22962 -12.15337 -11.38800 -11.26014 -11.15978 -11.00350 -10.97165 -10.71197 -10.56643 -10.29955 -10.26469 -10.08875 -9.35515 -9.18241 -8.63750 -8.35656 -7.54230 -6.03890 -4.06691 2.19459 2.99449 3.33122 3.37170 3.40407 4.31379 4.44588 4.56261 4.63167 4.80587 5.11847 5.15088 5.29043 5.32593 5.41043 5.43654 5.51157 5.65523 5.86075 5.96099 6.00484 6.02204 6.06135 6.11180 6.15613 6.33077 6.46917 6.76033 6.90543 7.63954 7.74716 7.83422 7.98338 8.37211 8.99666 9.57557 11.07519 Molecular weight = 245.12amu Principal moments of inertia in cm(-1) A = 0.048864 B = 0.004400 C = 0.004171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.879224 B = 6362.722547 C = 6711.128454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.019 3.981 10 C 0.141 3.859 11 N -1.019 6.019 12 S 1.484 4.516 13 O -0.904 6.904 14 C -0.448 4.448 15 C -0.092 4.092 16 C -0.113 4.113 17 C -0.120 4.120 18 C -0.115 4.115 19 C -0.107 4.107 20 H 0.262 0.738 21 H 0.024 0.976 22 H 0.017 0.983 23 H 0.037 0.963 24 H 0.051 0.949 25 H 0.389 0.611 26 H 0.116 0.884 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.606 -18.437 -4.560 19.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.075 0.925 9 C -0.020 4.020 10 C 0.015 3.985 11 N -0.774 5.774 12 S 1.586 4.414 13 O -0.887 6.887 14 C -0.562 4.562 15 C -0.131 4.131 16 C -0.151 4.151 17 C -0.157 4.157 18 C -0.153 4.153 19 C -0.145 4.145 20 H 0.071 0.929 21 H 0.042 0.958 22 H 0.036 0.964 23 H 0.055 0.945 24 H 0.069 0.931 25 H 0.219 0.781 26 H 0.135 0.865 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.458 -18.379 -4.753 18.989 hybrid contribution -1.008 0.839 2.148 2.517 sum -0.550 -17.540 -2.604 17.741 Atomic orbital electron populations 1.69956 1.06086 1.26828 1.50508 1.25001 0.94864 0.99305 0.95118 0.86606 0.79537 0.82846 0.78711 1.20093 1.21290 1.20226 1.21102 0.93148 0.90725 1.51187 0.92464 1.19273 0.94184 0.90830 0.97703 1.21281 0.95492 0.82827 0.98881 1.52894 1.18353 1.17550 1.88563 1.70129 0.80142 0.78608 1.12534 1.92953 1.54545 1.82176 1.59065 1.28115 1.15259 1.10551 1.02294 1.21128 0.97867 0.92164 1.01967 1.21481 0.98042 0.98293 0.97315 1.21527 0.99829 0.96913 0.97471 1.21506 0.97735 0.94718 1.01347 1.21434 0.98326 0.99316 0.95457 0.92885 0.95780 0.96432 0.94487 0.93115 0.78130 0.86542 0.91765 0.91012 0.91774 0.92112 0.92315 0.92295 0.92361 0.91883 0.91726 0.91749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 7 C -0.52 -14.67 9.11 -34.44 -0.31 -14.99 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.48 5.11 -27.88 -0.14 0.34 16 10 C 0.14 2.99 6.21 -4.04 -0.03 2.97 16 11 N -1.02 -17.52 5.71 -10.61 -0.06 -17.58 16 12 S 1.48 20.42 13.48 -107.50 -1.45 18.97 16 13 O -0.90 -18.32 17.88 -35.23 -0.63 -18.95 16 14 C -0.45 -5.04 2.73 -26.73 -0.07 -5.11 16 15 C -0.09 -0.92 5.21 -26.73 -0.14 -1.06 16 16 C -0.11 -1.00 5.92 -26.73 -0.16 -1.16 16 17 C -0.12 -1.17 5.92 -26.73 -0.16 -1.33 16 18 C -0.11 -1.25 5.93 -26.71 -0.16 -1.41 16 19 C -0.11 -1.41 5.00 -26.71 -0.13 -1.54 16 20 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 21 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 22 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 23 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 24 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.39 6.41 7.09 -34.48 -0.24 6.17 16 26 H 0.12 1.08 8.14 -51.92 -0.42 0.65 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 1.00 8.10 -51.93 -0.42 0.58 16 36 H 0.06 0.89 6.73 -51.93 -0.35 0.54 16 LS Contribution 301.64 15.07 4.55 4.55 Total: -1.00 -34.75 301.64 -9.33 -44.08 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -6.05 Total: -0.02 kcal Atomic # 6 Polarization: -20.32 SS G_CDS: -1.40 Total: -21.72 kcal Atomic # 7 Polarization: -44.08 SS G_CDS: 0.68 Total: -43.40 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.63 Total: -18.95 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: 20.42 SS G_CDS: -1.45 Total: 18.97 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -34.75 -9.33 -44.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385758053.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.269 kcal (2) G-P(sol) polarization free energy of solvation -34.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds