Wall clock time and date at job start Mon Mar 30 2020 04:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86792 * 120.00311 * 2 1 4 4 H 1.48505 * 109.46934 * 240.00356 * 3 2 1 5 5 H 1.48505 * 109.46958 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47198 * 120.00188 * 3 2 1 7 7 C 1.39955 * 119.99505 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99391 * 197.85603 * 7 2 1 9 9 C 1.41390 * 120.00314 * 17.84914 * 7 2 1 10 10 C 1.40716 * 120.24351 * 24.39522 * 9 7 2 11 11 C 1.37614 * 119.74718 * 180.02562 * 10 9 7 12 12 C 1.38638 * 120.24864 * 0.02562 * 11 10 9 13 13 C 1.50698 * 119.75289 * 179.97438 * 12 11 10 14 14 N 1.46497 * 109.46749 * 89.99864 * 13 12 11 15 15 C 1.46761 * 124.35135 * 270.00165 * 14 13 12 16 16 C 1.54486 * 105.47480 * 196.99549 * 15 14 13 17 17 C 1.54780 * 101.69284 * 334.39075 * 16 15 14 18 18 C 1.34422 * 124.35007 * 89.97953 * 14 13 12 19 19 O 1.21278 * 124.94176 * 359.57208 * 18 14 13 20 20 C 1.38634 * 120.49829 * 0.24998 * 12 11 10 21 21 C 1.37621 * 120.24736 * 359.45016 * 20 12 11 22 22 H 0.97001 * 120.00177 * 359.97438 * 1 2 3 23 23 H 1.08001 * 120.12724 * 359.97438 * 10 9 7 24 24 H 1.07998 * 119.87924 * 179.97438 * 11 10 9 25 25 H 1.08997 * 109.46933 * 330.00348 * 13 12 11 26 26 H 1.08993 * 109.47314 * 210.00249 * 13 12 11 27 27 H 1.09001 * 110.24413 * 315.99282 * 15 14 13 28 28 H 1.08994 * 110.24739 * 77.90827 * 15 14 13 29 29 H 1.09002 * 110.96910 * 92.70359 * 16 15 14 30 30 H 1.08995 * 110.97349 * 216.46240 * 16 15 14 31 31 H 1.08995 * 110.61911 * 266.40125 * 17 16 15 32 32 H 1.08999 * 110.42903 * 143.70162 * 17 16 15 33 33 H 1.08002 * 119.87718 * 179.70512 * 20 12 11 34 34 H 1.08007 * 120.12789 * 180.27504 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 3.0960 1.6962 -1.2126 5 1 1.2773 2.7464 0.0006 6 1 3.0961 1.6962 1.2125 7 6 2.0079 -1.2121 -0.0005 8 1 3.0489 -1.2347 0.2863 9 6 1.3519 -2.4069 -0.3764 10 6 0.2207 -2.3617 -1.2121 11 6 -0.4101 -3.5309 -1.5711 12 6 0.0645 -4.7500 -1.1122 13 6 -0.6353 -6.0234 -1.5118 14 7 -0.0460 -6.5360 -2.7513 15 6 -0.5124 -6.1838 -4.0975 16 6 0.0833 -7.2581 -5.0343 17 6 1.3334 -7.7083 -4.2403 18 6 0.9916 -7.3891 -2.8016 19 8 1.5725 -7.8341 -1.8345 20 6 1.1747 -4.8060 -0.2838 21 6 1.8250 -3.6499 0.0830 22 1 -0.4850 0.8400 0.0004 23 1 -0.1515 -1.4131 -1.5697 24 1 -1.2787 -3.4986 -2.2121 25 1 -1.6947 -5.8216 -1.6696 26 1 -0.5204 -6.7646 -0.7211 27 1 -1.6013 -6.2097 -4.1382 28 1 -0.1485 -5.1949 -4.3760 29 1 -0.6137 -8.0846 -5.1730 30 1 0.3682 -6.8251 -5.9931 31 1 2.2121 -7.1468 -4.5572 32 1 1.4981 -8.7786 -4.3648 33 1 1.5331 -5.7608 0.0717 34 1 2.6924 -3.6962 0.7249 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399102952.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:47 Heat of formation + Delta-G solvation = -24.403926 kcal Electronic energy + Delta-G solvation = -17112.645808 eV Core-core repulsion = 14395.500522 eV Total energy + Delta-G solvation = -2717.145286 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 245.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.98976 -37.51131 -35.99759 -34.08884 -32.49428 -29.86110 -29.22950 -27.34817 -26.73280 -23.85080 -21.82786 -20.85654 -20.28351 -18.88187 -17.30295 -16.45356 -16.24881 -15.37641 -15.03560 -14.35935 -13.83026 -13.60310 -13.44427 -13.16405 -12.95607 -12.54291 -12.43349 -11.94303 -11.67177 -11.53090 -11.33960 -11.09003 -11.03235 -10.90831 -10.65656 -10.46090 -9.74567 -9.44720 -9.38542 -9.13699 -8.24493 -7.46958 -7.32791 -6.79312 -4.37782 2.64954 2.97901 3.04156 3.06507 3.09213 3.12147 3.64221 3.90738 4.53631 4.56710 4.62019 4.85562 5.17832 5.55779 5.63189 5.63774 5.69056 5.71982 5.84800 6.00386 6.09413 6.18940 6.34069 6.47785 6.94451 6.95538 7.05316 7.27563 7.35489 7.55221 7.62175 7.85710 8.03989 8.12522 8.29450 8.57494 8.62205 8.87397 8.96138 10.14936 Molecular weight = 245.12amu Principal moments of inertia in cm(-1) A = 0.038413 B = 0.005252 C = 0.005107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.743026 B = 5330.497135 C = 5481.415070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.077 3.923 3 Si 0.909 3.091 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.462 4.462 8 H 0.077 0.923 9 C 0.115 3.885 10 C -0.170 4.170 11 C -0.086 4.086 12 C -0.242 4.242 13 C 0.187 3.813 14 N -0.607 5.607 15 C 0.101 3.899 16 C -0.131 4.131 17 C -0.156 4.156 18 C 0.512 3.488 19 O -0.539 6.539 20 C -0.066 4.066 21 C -0.229 4.229 22 H 0.281 0.719 23 H 0.117 0.883 24 H 0.084 0.916 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.784 -7.265 -9.286 12.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.141 4.141 3 Si 0.733 3.267 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.491 4.491 8 H 0.095 0.905 9 C 0.112 3.888 10 C -0.190 4.190 11 C -0.105 4.105 12 C -0.244 4.244 13 C 0.067 3.933 14 N -0.340 5.340 15 C -0.022 4.022 16 C -0.169 4.169 17 C -0.196 4.196 18 C 0.300 3.700 19 O -0.417 6.417 20 C -0.085 4.085 21 C -0.249 4.249 22 H 0.092 0.908 23 H 0.135 0.865 24 H 0.102 0.898 25 H 0.087 0.913 26 H 0.091 0.909 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.097 0.903 30 H 0.104 0.896 31 H 0.119 0.881 32 H 0.113 0.887 33 H 0.109 0.891 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.751 -7.307 -8.681 11.676 hybrid contribution 0.308 0.971 0.016 1.019 sum -2.444 -6.336 -8.665 11.009 Atomic orbital electron populations 1.69822 1.07612 1.29342 1.34902 1.25923 0.94724 1.01333 0.92164 0.86365 0.80169 0.80144 0.80041 1.18806 1.20298 1.18955 1.19601 0.98174 0.91335 1.39990 0.90459 1.17649 0.90972 0.91986 0.88156 1.21273 0.99523 0.96680 1.01490 1.20483 0.98163 0.92696 0.99121 1.19262 1.02618 0.93072 1.09481 1.20044 0.95197 0.94118 0.83923 1.48622 1.33586 1.44947 1.06856 1.22026 0.99525 0.98663 0.82032 1.22608 0.96827 0.98901 0.98565 1.22364 0.99707 1.03635 0.93937 1.20786 0.79694 0.78509 0.91043 1.90684 1.54001 1.55563 1.41408 1.20478 0.94696 0.96624 0.96703 1.20987 1.03793 0.92924 1.07206 0.90796 0.86494 0.89755 0.91324 0.90917 0.90818 0.91013 0.90349 0.89555 0.88123 0.88705 0.89107 0.89077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.40 10.95 55.55 0.61 -19.79 16 2 C 0.08 1.93 5.14 -17.34 -0.09 1.84 16 3 Si 0.91 18.65 29.59 -169.99 -5.03 13.62 16 4 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 5 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 6 H -0.26 -5.39 7.11 56.52 0.40 -4.98 16 7 C -0.46 -12.41 9.05 -37.74 -0.34 -12.75 16 8 H 0.08 2.01 7.91 -52.48 -0.42 1.59 16 9 C 0.11 3.12 5.57 -106.83 -0.60 2.53 16 10 C -0.17 -4.41 8.70 -38.87 -0.34 -4.75 16 11 C -0.09 -1.96 9.67 -39.66 -0.38 -2.34 16 12 C -0.24 -5.35 5.48 -104.33 -0.57 -5.92 16 13 C 0.19 3.38 6.05 -5.20 -0.03 3.35 16 14 N -0.61 -9.88 2.92 -173.79 -0.51 -10.39 16 15 C 0.10 1.22 7.35 -3.12 -0.02 1.19 16 16 C -0.13 -1.20 7.19 -25.01 -0.18 -1.38 16 17 C -0.16 -1.85 6.87 -26.66 -0.18 -2.03 16 18 C 0.51 8.83 8.02 -10.86 -0.09 8.75 16 19 O -0.54 -11.54 17.60 5.56 0.10 -11.44 16 20 C -0.07 -1.59 9.67 -39.66 -0.38 -1.98 16 21 C -0.23 -5.92 9.80 -38.87 -0.38 -6.30 16 22 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 23 H 0.12 3.11 6.15 -52.49 -0.32 2.78 16 24 H 0.08 1.70 8.06 -52.49 -0.42 1.27 16 25 H 0.07 1.08 8.08 -51.93 -0.42 0.66 16 26 H 0.07 1.35 7.87 -51.93 -0.41 0.94 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 34 H 0.09 2.25 8.06 -52.48 -0.42 1.83 16 LS Contribution 292.26 15.07 4.40 4.40 Total: -1.00 -30.45 292.26 -8.52 -38.97 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -4.51 Total: 4.43 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: -3.59 Total: -19.81 kcal Atomic # 7 Polarization: -30.28 SS G_CDS: 0.10 Total: -30.18 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.10 Total: -11.44 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.62 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.45 -8.52 -38.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399102952.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.565 kcal (2) G-P(sol) polarization free energy of solvation -30.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds