Wall clock time and date at job start Mon Mar 30 2020 04:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86792 * 120.00311 * 2 1 4 4 H 1.48505 * 109.46934 * 240.00356 * 3 2 1 5 5 H 1.48505 * 109.46958 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47198 * 120.00188 * 3 2 1 7 7 C 1.39955 * 119.99505 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99391 * 197.85603 * 7 2 1 9 9 C 1.41390 * 120.00314 * 17.84914 * 7 2 1 10 10 C 1.40716 * 120.24351 * 24.39522 * 9 7 2 11 11 C 1.37614 * 119.74718 * 180.02562 * 10 9 7 12 12 C 1.38638 * 120.24864 * 0.02562 * 11 10 9 13 13 C 1.50698 * 119.75289 * 179.97438 * 12 11 10 14 14 N 1.46497 * 109.46749 * 89.99864 * 13 12 11 15 15 C 1.46761 * 124.35135 * 270.00165 * 14 13 12 16 16 C 1.54486 * 105.47480 * 196.99549 * 15 14 13 17 17 C 1.54780 * 101.69284 * 334.39075 * 16 15 14 18 18 C 1.34422 * 124.35007 * 89.97953 * 14 13 12 19 19 O 1.21278 * 124.94176 * 359.57208 * 18 14 13 20 20 C 1.38634 * 120.49829 * 0.24998 * 12 11 10 21 21 C 1.37621 * 120.24736 * 359.45016 * 20 12 11 22 22 H 0.97001 * 120.00177 * 359.97438 * 1 2 3 23 23 H 1.08001 * 120.12724 * 359.97438 * 10 9 7 24 24 H 1.07998 * 119.87924 * 179.97438 * 11 10 9 25 25 H 1.08997 * 109.46933 * 330.00348 * 13 12 11 26 26 H 1.08993 * 109.47314 * 210.00249 * 13 12 11 27 27 H 1.09001 * 110.24413 * 315.99282 * 15 14 13 28 28 H 1.08994 * 110.24739 * 77.90827 * 15 14 13 29 29 H 1.09002 * 110.96910 * 92.70359 * 16 15 14 30 30 H 1.08995 * 110.97349 * 216.46240 * 16 15 14 31 31 H 1.08995 * 110.61911 * 266.40125 * 17 16 15 32 32 H 1.08999 * 110.42903 * 143.70162 * 17 16 15 33 33 H 1.08002 * 119.87718 * 179.70512 * 20 12 11 34 34 H 1.08007 * 120.12789 * 180.27504 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 3.0960 1.6962 -1.2126 5 1 1.2773 2.7464 0.0006 6 1 3.0961 1.6962 1.2125 7 6 2.0079 -1.2121 -0.0005 8 1 3.0489 -1.2347 0.2863 9 6 1.3519 -2.4069 -0.3764 10 6 0.2207 -2.3617 -1.2121 11 6 -0.4101 -3.5309 -1.5711 12 6 0.0645 -4.7500 -1.1122 13 6 -0.6353 -6.0234 -1.5118 14 7 -0.0460 -6.5360 -2.7513 15 6 -0.5124 -6.1838 -4.0975 16 6 0.0833 -7.2581 -5.0343 17 6 1.3334 -7.7083 -4.2403 18 6 0.9916 -7.3891 -2.8016 19 8 1.5725 -7.8341 -1.8345 20 6 1.1747 -4.8060 -0.2838 21 6 1.8250 -3.6499 0.0830 22 1 -0.4850 0.8400 0.0004 23 1 -0.1515 -1.4131 -1.5697 24 1 -1.2787 -3.4986 -2.2121 25 1 -1.6947 -5.8216 -1.6696 26 1 -0.5204 -6.7646 -0.7211 27 1 -1.6013 -6.2097 -4.1382 28 1 -0.1485 -5.1949 -4.3760 29 1 -0.6137 -8.0846 -5.1730 30 1 0.3682 -6.8251 -5.9931 31 1 2.2121 -7.1468 -4.5572 32 1 1.4981 -8.7786 -4.3648 33 1 1.5331 -5.7608 0.0717 34 1 2.6924 -3.6962 0.7249 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399102952.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:47 Heat of formation + Delta-G solvation = -41.717673 kcal Electronic energy + Delta-G solvation = -17113.396589 eV Core-core repulsion = 14395.500522 eV Total energy + Delta-G solvation = -2717.896066 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 245.116 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.24382 -39.38369 -37.32848 -35.87267 -33.94796 -31.55616 -31.13518 -28.41707 -28.35919 -25.56797 -23.11776 -22.45870 -22.05317 -20.23290 -19.26359 -17.60148 -17.54725 -17.16455 -16.40061 -15.92957 -15.61269 -15.36301 -14.60403 -14.52197 -14.42841 -13.92897 -13.79835 -13.50150 -13.38508 -13.15858 -12.79125 -12.67404 -12.45256 -12.24089 -12.16470 -11.81146 -11.56759 -11.30783 -11.04335 -10.76359 -9.60289 -9.41686 -9.27272 -8.67882 -6.38614 0.85389 1.09607 1.36566 1.46450 1.50151 1.68364 2.18833 2.28728 2.75464 3.52501 3.70127 3.71988 4.10782 4.19366 4.29773 4.34604 4.52578 4.55033 4.68112 4.77961 4.79345 4.89638 4.97567 5.11489 5.12252 5.27748 5.32195 5.42223 5.65004 5.70195 5.92147 6.04770 6.13535 6.35116 6.36660 6.64872 6.89489 6.98331 7.26755 8.29022 Molecular weight = 245.12amu Principal moments of inertia in cm(-1) A = 0.038413 B = 0.005252 C = 0.005107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.743026 B = 5330.497135 C = 5481.415070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.039 3.961 3 Si 0.984 3.016 4 H -0.260 1.260 5 H -0.262 1.262 6 H -0.262 1.262 7 C -0.503 4.503 8 H 0.071 0.929 9 C 0.084 3.916 10 C -0.190 4.190 11 C -0.079 4.079 12 C -0.229 4.229 13 C 0.189 3.811 14 N -0.611 5.611 15 C 0.091 3.909 16 C -0.113 4.113 17 C -0.149 4.149 18 C 0.493 3.507 19 O -0.594 6.594 20 C -0.077 4.077 21 C -0.252 4.252 22 H 0.291 0.709 23 H 0.106 0.894 24 H 0.119 0.881 25 H 0.102 0.898 26 H 0.062 0.938 27 H 0.100 0.900 28 H 0.064 0.936 29 H 0.100 0.900 30 H 0.114 0.886 31 H 0.106 0.894 32 H 0.113 0.887 33 H 0.090 0.910 34 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.018 -7.379 -11.601 14.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.177 4.177 3 Si 0.804 3.196 4 H -0.185 1.185 5 H -0.186 1.186 6 H -0.186 1.186 7 C -0.532 4.532 8 H 0.089 0.911 9 C 0.081 3.919 10 C -0.209 4.209 11 C -0.098 4.098 12 C -0.231 4.231 13 C 0.068 3.932 14 N -0.342 5.342 15 C -0.031 4.031 16 C -0.151 4.151 17 C -0.189 4.189 18 C 0.282 3.718 19 O -0.476 6.476 20 C -0.096 4.096 21 C -0.272 4.272 22 H 0.101 0.899 23 H 0.124 0.876 24 H 0.137 0.863 25 H 0.120 0.880 26 H 0.080 0.920 27 H 0.118 0.882 28 H 0.082 0.918 29 H 0.119 0.881 30 H 0.133 0.867 31 H 0.124 0.876 32 H 0.131 0.869 33 H 0.108 0.892 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.011 -7.429 -11.034 13.893 hybrid contribution 0.627 0.879 0.726 1.301 sum -3.384 -6.551 -10.308 12.674 Atomic orbital electron populations 1.69851 1.08926 1.30836 1.34941 1.26748 0.95544 1.04394 0.91021 0.85239 0.78847 0.75532 0.80004 1.18464 1.18646 1.18638 1.19821 0.98297 0.92732 1.42340 0.91112 1.17980 0.92118 0.92557 0.89216 1.21305 0.99977 0.97433 1.02223 1.20773 0.98588 0.91727 0.98724 1.19702 1.01225 0.94903 1.07234 1.19951 0.96518 0.91692 0.85053 1.48685 1.33380 1.44310 1.07874 1.22368 1.01294 0.99308 0.80108 1.22653 0.95376 0.98615 0.98428 1.22400 1.01281 1.04996 0.90242 1.21850 0.79148 0.77979 0.92810 1.90647 1.55664 1.57502 1.43739 1.20625 0.95595 0.95919 0.97435 1.21111 1.04408 0.93546 1.08089 0.89855 0.87564 0.86265 0.88030 0.91970 0.88223 0.91767 0.88110 0.86728 0.87607 0.86906 0.89210 0.89549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.77 10.95 21.83 0.24 -42.53 16 2 C 0.04 1.96 5.14 85.26 0.44 2.40 16 3 Si 0.98 38.40 29.59 68.60 2.03 40.43 16 4 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 5 H -0.26 -9.49 7.11 99.48 0.71 -8.79 16 6 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 7 C -0.50 -28.11 9.05 23.46 0.21 -27.90 16 8 H 0.07 3.87 7.91 -2.91 -0.02 3.85 16 9 C 0.08 4.73 5.57 -21.29 -0.12 4.61 16 10 C -0.19 -10.01 8.70 22.73 0.20 -9.81 16 11 C -0.08 -3.56 9.67 22.22 0.21 -3.35 16 12 C -0.23 -9.99 5.48 -19.67 -0.11 -10.09 16 13 C 0.19 6.50 6.05 85.63 0.52 7.02 16 14 N -0.61 -18.56 2.92 -822.34 -2.40 -20.96 16 15 C 0.09 1.84 7.35 86.83 0.64 2.48 16 16 C -0.11 -1.55 7.19 31.71 0.23 -1.32 16 17 C -0.15 -3.10 6.87 30.64 0.21 -2.89 16 18 C 0.49 16.43 8.02 87.90 0.70 17.13 16 19 O -0.59 -25.78 17.60 -3.02 -0.05 -25.83 16 20 C -0.08 -3.81 9.67 22.22 0.21 -3.59 16 21 C -0.25 -13.62 9.80 22.73 0.22 -13.40 16 22 H 0.29 13.58 8.30 -92.71 -0.77 12.81 16 23 H 0.11 5.76 6.15 -2.91 -0.02 5.74 16 24 H 0.12 4.45 8.06 -2.91 -0.02 4.43 16 25 H 0.10 2.84 8.08 -2.39 -0.02 2.82 16 26 H 0.06 2.28 7.87 -2.39 -0.02 2.26 16 27 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.09 4.39 8.06 -2.91 -0.02 4.37 16 34 H 0.09 4.56 8.06 -2.91 -0.02 4.54 16 Total: -1.00 -69.69 292.26 4.48 -65.21 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: 1.09 Total: 22.40 kcal Atomic # 6 Polarization: -42.28 SS G_CDS: 3.57 Total: -38.71 kcal Atomic # 7 Polarization: -61.34 SS G_CDS: -2.16 Total: -63.49 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -0.05 Total: -25.83 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 2.03 Total: 40.43 kcal Total: -69.69 4.48 -65.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399102952.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.490 kcal (2) G-P(sol) polarization free energy of solvation -69.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds