Wall clock time and date at job start Mon Mar 30 2020 03:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09009 * 109.46682 * 2 1 4 4 C 1.52997 * 109.47142 * 240.00761 * 2 1 3 5 5 Cl 1.80298 * 109.47378 * 64.99364 * 4 2 1 6 6 C 1.50694 * 109.47180 * 119.99925 * 2 1 3 7 7 O 1.21289 * 119.99659 * 84.91344 * 6 2 1 8 8 N 1.34776 * 120.00487 * 264.91074 * 6 2 1 9 9 C 1.46499 * 119.99990 * 184.88265 * 8 6 2 10 10 C 1.53005 * 109.46962 * 175.79173 * 9 8 6 11 11 C 1.50698 * 115.54873 * 297.94751 * 10 9 8 12 12 H 1.08007 * 120.00205 * 93.69790 * 11 10 9 13 13 C 1.37874 * 120.00199 * 273.69394 * 11 10 9 14 14 N 1.31522 * 119.99797 * 6.92250 * 13 11 10 15 15 Si 1.86797 * 120.00524 * 186.92479 * 13 11 10 16 16 H 1.48500 * 109.46842 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47440 * 119.99889 * 15 13 11 18 18 H 1.48506 * 109.47212 * 240.00124 * 15 13 11 19 19 C 1.52999 * 117.50059 * 152.27684 * 10 9 8 20 20 C 1.53000 * 117.49778 * 83.61665 * 10 9 8 21 21 H 1.09000 * 109.47110 * 55.81708 * 1 2 3 22 22 H 1.09004 * 109.46719 * 295.82186 * 1 2 3 23 23 H 1.08994 * 109.47126 * 175.82455 * 1 2 3 24 24 H 1.08992 * 109.47196 * 184.99878 * 4 2 1 25 25 H 1.09012 * 109.46525 * 304.99717 * 4 2 1 26 26 H 0.97003 * 119.99753 * 4.88154 * 8 6 2 27 27 H 1.08999 * 109.47413 * 295.78719 * 9 8 6 28 28 H 1.09000 * 109.47125 * 55.79687 * 9 8 6 29 29 H 0.96998 * 120.00113 * 185.00552 * 14 13 11 30 30 H 1.09002 * 117.49664 * 359.97438 * 19 10 9 31 31 H 1.08993 * 117.49912 * 145.01774 * 19 10 9 32 32 H 1.09004 * 117.49488 * 214.98269 * 20 10 9 33 33 H 1.08998 * 117.50111 * 359.97438 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2493 5 17 1.5629 0.2101 -2.7176 6 6 2.0324 -0.7104 1.2304 7 8 2.1467 -1.9179 1.2293 8 7 2.3547 -0.0040 2.3321 9 6 2.9433 -0.6812 3.4902 10 6 3.3085 0.3547 4.5554 11 6 4.3376 1.3755 4.1433 12 1 4.0232 2.3265 3.7391 13 6 5.6805 1.0957 4.2824 14 7 6.0672 -0.1079 4.6451 15 14 6.9506 2.4259 3.9559 16 1 6.2622 3.6821 3.5643 17 1 7.7487 2.6610 5.1859 18 1 7.8506 1.9921 2.8571 19 6 3.3139 -0.1044 6.0148 20 6 2.1996 0.8128 5.5048 21 1 -0.3633 0.5774 -0.8501 22 1 -0.3633 0.4476 0.9251 23 1 -0.3633 -1.0249 -0.0748 24 1 3.1263 -0.7993 -1.2057 25 1 1.6054 -1.7197 -1.2952 26 1 2.1969 0.9527 2.3581 27 1 2.2232 -1.3879 3.9026 28 1 3.8411 -1.2161 3.1807 29 1 7.0058 -0.2856 4.8134 30 1 3.0568 -1.1444 6.2162 31 1 4.0615 0.3321 6.6770 32 1 2.2147 1.8526 5.8316 33 1 1.2098 0.3767 5.3703 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404157373.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:01 Heat of formation + Delta-G solvation = -61.344440 kcal Electronic energy + Delta-G solvation = -15854.058670 eV Core-core repulsion = 13132.878673 eV Total energy + Delta-G solvation = -2721.179996 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.092 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.89301 -38.56586 -37.15501 -35.07721 -34.74640 -33.95876 -28.35792 -27.97623 -27.24944 -23.83214 -22.91496 -21.35849 -20.64877 -18.49527 -17.93446 -16.80398 -16.62347 -16.30702 -15.76590 -15.53813 -15.12443 -14.54274 -14.39938 -13.88862 -13.67541 -13.48878 -13.19505 -12.99548 -12.79958 -12.67918 -12.42399 -12.33250 -12.03600 -11.50919 -11.46253 -11.31509 -10.85677 -10.80228 -10.45203 -10.06276 -9.83573 -8.11755 -6.24021 1.12984 1.40831 1.45462 1.54019 1.68846 2.39872 2.45853 3.18125 3.48559 3.51918 3.81173 3.88770 4.24869 4.30293 4.48750 4.55328 4.60419 4.65939 4.71460 4.85504 4.94683 5.00496 5.04562 5.24617 5.27617 5.55841 5.60514 5.67525 5.77933 6.35956 6.72880 6.84701 7.32741 7.46419 8.96833 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.022970 B = 0.006256 C = 0.005402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.670992 B = 4474.762455 C = 5182.440780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.110 4.110 3 H 0.117 0.883 4 C -0.008 4.008 5 Cl -0.178 7.178 6 C 0.510 3.490 7 O -0.595 6.595 8 N -0.694 5.694 9 C 0.178 3.822 10 C 0.002 3.998 11 C -0.500 4.500 12 H 0.065 0.935 13 C 0.025 3.975 14 N -0.908 5.908 15 Si 0.945 3.055 16 H -0.260 1.260 17 H -0.285 1.285 18 H -0.290 1.290 19 C -0.160 4.160 20 C -0.175 4.175 21 H 0.089 0.911 22 H 0.071 0.929 23 H 0.058 0.942 24 H 0.090 0.910 25 H 0.103 0.897 26 H 0.411 0.589 27 H 0.037 0.963 28 H 0.030 0.970 29 H 0.258 0.742 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.086 0.914 33 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.869 3.033 -8.637 13.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.132 4.132 3 H 0.135 0.865 4 C -0.071 4.071 5 Cl -0.152 7.152 6 C 0.297 3.703 7 O -0.477 6.477 8 N -0.343 5.343 9 C 0.053 3.947 10 C 0.001 3.999 11 C -0.538 4.538 12 H 0.083 0.917 13 C -0.176 4.176 14 N -0.546 5.546 15 Si 0.772 3.228 16 H -0.184 1.184 17 H -0.211 1.211 18 H -0.216 1.216 19 C -0.198 4.198 20 C -0.212 4.212 21 H 0.108 0.892 22 H 0.090 0.910 23 H 0.078 0.922 24 H 0.109 0.891 25 H 0.122 0.878 26 H 0.247 0.753 27 H 0.055 0.945 28 H 0.049 0.951 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.105 0.895 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.634 2.147 -8.751 13.191 hybrid contribution 1.208 0.668 0.225 1.399 sum -8.426 2.815 -8.526 12.313 Atomic orbital electron populations 1.21768 0.90179 1.03296 1.04189 1.21528 1.00042 1.01424 0.90212 0.86473 1.24099 1.02617 0.96791 0.83583 1.98702 1.93807 1.78091 1.44584 1.20973 0.76932 0.87316 0.85072 1.90655 1.56381 1.16105 1.84526 1.45883 1.61136 1.12643 1.14635 1.20586 0.94421 0.93744 0.85904 1.19100 0.96373 0.96433 0.87988 1.20702 0.89974 1.00401 1.42682 0.91688 1.25673 1.00356 0.96550 0.94998 1.70145 1.16415 1.20811 1.47199 0.85705 0.79428 0.80331 0.77363 1.18410 1.21069 1.21624 1.22416 1.00662 0.97424 0.99309 1.23034 0.93117 0.99110 1.05979 0.89245 0.90983 0.92244 0.89096 0.87831 0.75257 0.94504 0.95134 0.93280 0.91147 0.91878 0.89506 0.89131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 8.96 71.98 0.65 -2.03 16 2 C -0.11 -2.65 2.78 -11.54 -0.03 -2.68 16 3 H 0.12 2.45 8.13 -2.38 -0.02 2.43 16 4 C -0.01 -0.18 5.65 71.98 0.41 0.23 16 5 Cl -0.18 -3.79 28.20 -2.72 -0.08 -3.87 16 6 C 0.51 17.40 6.82 87.66 0.60 18.00 16 7 O -0.59 -25.01 16.38 -3.06 -0.05 -25.06 16 8 N -0.69 -25.01 5.42 -463.05 -2.51 -27.52 16 9 C 0.18 7.83 5.51 86.38 0.48 8.31 16 10 C 0.00 0.08 1.42 -52.93 -0.07 0.01 16 11 C -0.50 -24.72 8.57 25.60 0.22 -24.50 16 12 H 0.06 3.09 7.82 -2.91 -0.02 3.07 16 13 C 0.02 1.29 5.38 84.65 0.46 1.74 16 14 N -0.91 -50.64 12.89 21.45 0.28 -50.37 16 15 Si 0.95 41.40 29.55 68.60 2.03 43.43 16 16 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 17 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 18 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 19 C -0.16 -7.08 9.39 30.62 0.29 -6.79 16 20 C -0.18 -6.66 9.95 30.62 0.30 -6.35 16 21 H 0.09 1.46 7.42 -2.39 -0.02 1.44 16 22 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 23 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 25 H 0.10 2.45 8.02 -2.38 -0.02 2.43 16 26 H 0.41 13.03 8.35 -92.71 -0.77 12.26 16 27 H 0.04 1.59 8.11 -2.39 -0.02 1.57 16 28 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.26 13.90 8.32 -92.71 -0.77 13.13 16 30 H 0.07 2.98 8.14 -2.39 -0.02 2.97 16 31 H 0.06 3.03 8.14 -2.39 -0.02 3.01 16 32 H 0.09 3.18 8.14 -2.38 -0.02 3.16 16 33 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 Total: -1.00 -59.91 299.50 3.27 -56.64 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: 0.32 Total: 20.79 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: 3.29 Total: -14.05 kcal Atomic # 7 Polarization: -75.65 SS G_CDS: -2.23 Total: -77.89 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -0.05 Total: -25.06 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal Atomic # 17 Polarization: -3.79 SS G_CDS: -0.08 Total: -3.87 kcal Total: -59.91 3.27 -56.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404157373.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.705 kcal (2) G-P(sol) polarization free energy of solvation -59.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds