Wall clock time and date at job start Mon Mar 30 2020 03:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31028 * 1 3 3 Si 1.86799 * 120.00463 * 2 1 4 4 H 1.48496 * 109.47121 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47107 * 299.99675 * 3 2 1 6 6 H 1.48499 * 109.47162 * 59.99499 * 3 2 1 7 7 C 1.39764 * 119.99903 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00388 * 162.89125 * 7 2 1 9 9 C 1.41027 * 119.99546 * 342.89377 * 7 2 1 10 10 C 1.39492 * 120.77558 * 335.22336 * 9 7 2 11 11 N 1.34669 * 119.56459 * 179.97438 * 10 9 7 12 12 H 0.97004 * 119.31176 * 179.97438 * 11 10 9 13 13 C 1.38008 * 121.36866 * 359.97438 * 11 10 9 14 14 C 1.36588 * 131.46262 * 180.02562 * 13 11 10 15 15 C 1.50695 * 126.04718 * 0.02562 * 14 13 11 16 16 C 1.53002 * 117.50079 * 170.96649 * 15 14 13 17 17 C 1.52998 * 117.50217 * 239.62970 * 15 14 13 18 18 C 1.39584 * 107.91131 * 179.75008 * 14 13 11 19 19 N 1.30891 * 108.62356 * 0.22546 * 18 14 13 20 20 N 1.36405 * 121.32223 * 0.17369 * 13 11 10 21 21 C 1.34898 * 120.40735 * 0.06952 * 20 13 11 22 22 O 1.21639 * 120.56239 * 180.25279 * 21 20 13 23 23 H 0.97003 * 119.99371 * 0.02562 * 1 2 3 24 24 H 1.07995 * 120.21501 * 0.02580 * 10 9 7 25 25 H 1.09005 * 115.54883 * 25.29949 * 15 14 13 26 26 H 1.09001 * 117.49784 * 215.00940 * 16 15 14 27 27 H 1.09004 * 117.49825 * 0.02562 * 16 15 14 28 28 H 1.08992 * 117.49617 * 359.97415 * 17 15 14 29 29 H 1.08998 * 117.50107 * 145.00240 * 17 15 14 30 30 H 1.07997 * 125.69017 * 180.19696 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3103 0.0000 0.0000 3 14 2.2444 1.6176 0.0000 4 1 3.7043 1.3462 0.0006 5 1 1.8858 2.3963 -1.2125 6 1 1.8856 2.3964 1.2124 7 6 2.0091 -1.2104 0.0005 8 1 3.0532 -1.2313 -0.2746 9 6 1.3506 -2.4045 0.3603 10 6 0.2238 -2.3785 1.1822 11 7 -0.3863 -3.5334 1.5101 12 1 -1.1693 -3.5111 2.0822 13 6 0.0795 -4.7480 1.0491 14 6 -0.3693 -6.0228 1.2470 15 6 -1.5633 -6.4242 2.0740 16 6 -2.0196 -7.8824 1.9947 17 6 -1.3204 -7.3663 3.2548 18 6 0.4700 -6.8875 0.5425 19 7 1.3935 -6.1786 -0.0557 20 7 1.1789 -4.8271 0.2456 21 6 1.8410 -3.7094 -0.1177 22 8 2.8190 -3.7763 -0.8379 23 1 -0.4849 0.8401 -0.0004 24 1 -0.1572 -1.4382 1.5524 25 1 -2.3335 -5.6614 2.1890 26 1 -3.0899 -8.0790 2.0574 27 1 -1.4559 -8.5516 1.3446 28 1 -0.2970 -7.6961 3.4332 29 1 -1.9307 -7.2234 4.1465 30 1 0.3737 -7.9623 0.4987 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527344022.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:19 Heat of formation + Delta-G solvation = 84.526388 kcal Electronic energy + Delta-G solvation = -17094.211063 eV Core-core repulsion = 14278.249007 eV Total energy + Delta-G solvation = -2815.962056 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.46851 -38.01672 -36.62722 -36.52703 -33.96346 -31.53813 -29.99607 -28.62585 -25.27703 -23.01364 -22.90129 -22.26356 -21.67157 -19.54665 -18.05166 -17.30687 -16.57706 -15.98262 -15.46499 -15.05725 -14.99236 -14.47091 -14.20256 -12.97592 -12.78218 -12.65285 -12.22013 -11.97107 -11.65647 -11.51292 -11.35985 -11.31004 -10.66944 -10.57363 -10.29487 -10.25107 -9.96836 -9.47653 -9.14515 -8.88395 -8.12249 -7.00793 -6.86652 -4.30131 2.02917 2.40676 2.94983 3.00456 3.05458 3.14683 3.24077 3.82577 3.89697 4.18791 4.28974 4.81282 5.07322 5.11490 5.27611 5.34132 5.48124 5.64780 5.77488 5.97338 6.04237 6.18718 6.28941 6.48100 6.52481 7.00502 7.02705 7.21184 7.38052 7.80107 8.05800 8.17270 8.23039 8.55874 8.66011 9.00767 10.08170 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.039277 B = 0.006444 C = 0.005703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.718269 B = 4343.811117 C = 4908.308149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.063 3.937 3 Si 0.920 3.080 4 H -0.259 1.259 5 H -0.274 1.274 6 H -0.272 1.272 7 C -0.406 4.406 8 H 0.088 0.912 9 C -0.039 4.039 10 C -0.035 4.035 11 N -0.575 5.575 12 H 0.414 0.586 13 C 0.338 3.662 14 C -0.300 4.300 15 C -0.049 4.049 16 C -0.179 4.179 17 C -0.184 4.184 18 C 0.098 3.902 19 N -0.308 5.308 20 N -0.358 5.358 21 C 0.543 3.457 22 O -0.511 6.511 23 H 0.282 0.718 24 H 0.177 0.823 25 H 0.098 0.902 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.783 -5.806 6.888 11.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.151 4.151 3 Si 0.744 3.256 4 H -0.183 1.183 5 H -0.200 1.200 6 H -0.197 1.197 7 C -0.439 4.439 8 H 0.106 0.894 9 C -0.050 4.050 10 C -0.158 4.158 11 N -0.189 5.189 12 H 0.249 0.751 13 C 0.113 3.887 14 C -0.317 4.317 15 C -0.069 4.069 16 C -0.216 4.216 17 C -0.221 4.221 18 C -0.089 4.089 19 N -0.127 5.127 20 N -0.160 5.160 21 C 0.342 3.658 22 O -0.383 6.383 23 H 0.092 0.908 24 H 0.194 0.806 25 H 0.116 0.884 26 H 0.108 0.892 27 H 0.111 0.889 28 H 0.110 0.890 29 H 0.107 0.893 30 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -5.146 -5.494 5.557 9.356 hybrid contribution -0.873 0.721 0.606 1.284 sum -6.019 -4.773 6.163 9.848 Atomic orbital electron populations 1.69768 1.07311 1.29263 1.37649 1.25779 0.94953 1.01231 0.93132 0.86042 0.80923 0.80127 0.78500 1.18284 1.19969 1.19707 1.19001 0.97853 0.88942 1.38069 0.89400 1.18794 0.97322 0.89006 0.99855 1.22092 1.01440 0.87300 1.04980 1.40226 1.29594 1.01832 1.47233 0.75068 1.18419 0.89288 0.87989 0.93031 1.18048 1.06870 0.88848 1.17929 1.19853 0.95982 0.92577 0.98444 1.22922 1.00174 0.97303 1.01248 1.23045 1.01600 1.05282 0.92208 1.23426 0.91908 0.99533 0.94043 1.77670 1.24143 0.84656 1.26243 1.48036 1.22760 1.06930 1.38270 1.20000 0.83240 0.82099 0.80492 1.90668 1.26023 1.85660 1.35934 0.90771 0.80649 0.88366 0.89180 0.88903 0.88952 0.89348 0.80395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -19.27 10.97 55.54 0.61 -18.66 16 2 C 0.06 1.51 5.16 -17.32 -0.09 1.42 16 3 Si 0.92 18.18 29.59 -169.99 -5.03 13.15 16 4 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 5 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 6 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 7 C -0.41 -10.67 8.81 -37.96 -0.33 -11.01 16 8 H 0.09 2.37 7.79 -52.49 -0.41 1.96 16 9 C -0.04 -1.02 5.73 -104.66 -0.60 -1.62 16 10 C -0.03 -0.77 9.97 -15.84 -0.16 -0.93 16 11 N -0.57 -10.88 5.31 -11.46 -0.06 -10.94 16 12 H 0.41 6.07 8.91 -40.82 -0.36 5.71 16 13 C 0.34 6.95 7.80 -153.36 -1.20 5.75 16 14 C -0.30 -5.21 5.79 -104.72 -0.61 -5.82 16 15 C -0.05 -0.65 6.25 -91.77 -0.57 -1.22 16 16 C -0.18 -1.95 10.03 -26.69 -0.27 -2.21 16 17 C -0.18 -2.07 10.24 -26.69 -0.27 -2.34 16 18 C 0.10 1.74 11.32 -17.45 -0.20 1.55 16 19 N -0.31 -7.02 12.63 30.57 0.39 -6.63 16 20 N -0.36 -8.73 3.80 -12.40 -0.05 -8.78 16 21 C 0.54 14.76 7.92 -12.49 -0.10 14.66 16 22 O -0.51 -15.20 17.43 5.24 0.09 -15.11 16 23 H 0.28 6.05 8.30 -40.82 -0.34 5.72 16 24 H 0.18 3.85 6.18 -52.49 -0.32 3.53 16 25 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 26 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.09 0.97 6.97 -51.93 -0.36 0.61 16 28 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 29 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.18 2.40 7.18 -52.49 -0.38 2.02 16 LS Contribution 267.95 15.07 4.04 4.04 Total: -1.00 -30.37 267.95 -7.07 -37.44 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -2.66 Total: 7.26 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: -4.40 Total: -1.77 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: 0.89 Total: -45.00 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: 0.09 Total: -15.11 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.03 Total: 13.15 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -30.37 -7.07 -37.44 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527344022.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.964 kcal (2) G-P(sol) polarization free energy of solvation -30.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds