Wall clock time and date at job start Mon Mar 30 2020 03:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31028 * 1 3 3 Si 1.86799 * 120.00463 * 2 1 4 4 H 1.48496 * 109.47121 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47107 * 299.99675 * 3 2 1 6 6 H 1.48499 * 109.47162 * 59.99499 * 3 2 1 7 7 C 1.39764 * 119.99903 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00388 * 162.89125 * 7 2 1 9 9 C 1.41027 * 119.99546 * 342.89377 * 7 2 1 10 10 C 1.39492 * 120.77558 * 335.22336 * 9 7 2 11 11 N 1.34669 * 119.56459 * 179.97438 * 10 9 7 12 12 H 0.97004 * 119.31176 * 179.97438 * 11 10 9 13 13 C 1.38008 * 121.36866 * 359.97438 * 11 10 9 14 14 C 1.36588 * 131.46262 * 180.02562 * 13 11 10 15 15 C 1.50695 * 126.04718 * 0.02562 * 14 13 11 16 16 C 1.53002 * 117.50079 * 170.96649 * 15 14 13 17 17 C 1.52998 * 117.50217 * 239.62970 * 15 14 13 18 18 C 1.39584 * 107.91131 * 179.75008 * 14 13 11 19 19 N 1.30891 * 108.62356 * 0.22546 * 18 14 13 20 20 N 1.36405 * 121.32223 * 0.17369 * 13 11 10 21 21 C 1.34898 * 120.40735 * 0.06952 * 20 13 11 22 22 O 1.21639 * 120.56239 * 180.25279 * 21 20 13 23 23 H 0.97003 * 119.99371 * 0.02562 * 1 2 3 24 24 H 1.07995 * 120.21501 * 0.02580 * 10 9 7 25 25 H 1.09005 * 115.54883 * 25.29949 * 15 14 13 26 26 H 1.09001 * 117.49784 * 215.00940 * 16 15 14 27 27 H 1.09004 * 117.49825 * 0.02562 * 16 15 14 28 28 H 1.08992 * 117.49617 * 359.97415 * 17 15 14 29 29 H 1.08998 * 117.50107 * 145.00240 * 17 15 14 30 30 H 1.07997 * 125.69017 * 180.19696 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3103 0.0000 0.0000 3 14 2.2444 1.6176 0.0000 4 1 3.7043 1.3462 0.0006 5 1 1.8858 2.3963 -1.2125 6 1 1.8856 2.3964 1.2124 7 6 2.0091 -1.2104 0.0005 8 1 3.0532 -1.2313 -0.2746 9 6 1.3506 -2.4045 0.3603 10 6 0.2238 -2.3785 1.1822 11 7 -0.3863 -3.5334 1.5101 12 1 -1.1693 -3.5111 2.0822 13 6 0.0795 -4.7480 1.0491 14 6 -0.3693 -6.0228 1.2470 15 6 -1.5633 -6.4242 2.0740 16 6 -2.0196 -7.8824 1.9947 17 6 -1.3204 -7.3663 3.2548 18 6 0.4700 -6.8875 0.5425 19 7 1.3935 -6.1786 -0.0557 20 7 1.1789 -4.8271 0.2456 21 6 1.8410 -3.7094 -0.1177 22 8 2.8190 -3.7763 -0.8379 23 1 -0.4849 0.8401 -0.0004 24 1 -0.1572 -1.4382 1.5524 25 1 -2.3335 -5.6614 2.1890 26 1 -3.0899 -8.0790 2.0574 27 1 -1.4559 -8.5516 1.3446 28 1 -0.2970 -7.6961 3.4332 29 1 -1.9307 -7.2234 4.1465 30 1 0.3737 -7.9623 0.4987 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527344022.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:19 Heat of formation + Delta-G solvation = 65.097229 kcal Electronic energy + Delta-G solvation = -17095.053575 eV Core-core repulsion = 14278.249007 eV Total energy + Delta-G solvation = -2816.804568 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.16629 -39.78892 -38.43955 -37.67228 -35.74645 -33.28846 -31.78777 -30.24100 -27.05814 -24.81634 -24.32312 -23.50124 -22.88700 -21.05549 -19.75556 -19.07073 -18.12127 -17.82059 -17.26413 -16.83690 -16.29775 -16.04810 -15.37541 -14.62167 -14.58477 -14.24049 -13.93204 -13.69875 -13.23273 -12.99860 -12.86352 -12.42766 -12.18140 -11.94026 -11.82948 -11.57351 -11.26063 -11.09965 -11.04847 -10.61883 -9.83257 -8.73785 -8.56510 -6.16111 0.27380 0.59631 1.24907 1.42754 1.44474 1.58287 1.78274 2.15975 2.27673 2.40962 3.16778 3.25618 3.51050 3.78975 4.13172 4.21323 4.23846 4.37628 4.51456 4.75336 4.86344 4.99049 5.18872 5.22515 5.37297 5.42849 5.45362 5.47424 5.69422 6.10618 6.25339 6.42612 6.51551 6.67592 6.84378 7.16684 8.35267 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.039277 B = 0.006444 C = 0.005703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.718269 B = 4343.811117 C = 4908.308149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.036 3.964 3 Si 0.985 3.015 4 H -0.274 1.274 5 H -0.269 1.269 6 H -0.251 1.251 7 C -0.454 4.454 8 H 0.058 0.942 9 C -0.087 4.087 10 C 0.021 3.979 11 N -0.562 5.562 12 H 0.437 0.563 13 C 0.310 3.690 14 C -0.266 4.266 15 C -0.078 4.078 16 C -0.162 4.162 17 C -0.172 4.172 18 C 0.110 3.890 19 N -0.357 5.357 20 N -0.378 5.378 21 C 0.526 3.474 22 O -0.565 6.565 23 H 0.293 0.707 24 H 0.187 0.813 25 H 0.114 0.886 26 H 0.112 0.888 27 H 0.099 0.901 28 H 0.085 0.915 29 H 0.109 0.891 30 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.656 -6.929 8.884 14.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.176 4.176 3 Si 0.807 3.193 4 H -0.198 1.198 5 H -0.194 1.194 6 H -0.174 1.174 7 C -0.487 4.487 8 H 0.076 0.924 9 C -0.098 4.098 10 C -0.105 4.105 11 N -0.179 5.179 12 H 0.277 0.723 13 C 0.087 3.913 14 C -0.283 4.283 15 C -0.097 4.097 16 C -0.199 4.199 17 C -0.210 4.210 18 C -0.075 4.075 19 N -0.177 5.177 20 N -0.178 5.178 21 C 0.326 3.674 22 O -0.443 6.443 23 H 0.104 0.896 24 H 0.204 0.796 25 H 0.132 0.868 26 H 0.130 0.870 27 H 0.117 0.883 28 H 0.104 0.896 29 H 0.128 0.872 30 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -8.112 -6.679 7.613 12.976 hybrid contribution -0.176 0.759 0.108 0.787 sum -8.288 -5.920 7.721 12.781 Atomic orbital electron populations 1.69717 1.07879 1.30706 1.38122 1.26385 0.95818 1.03234 0.92147 0.85092 0.78664 0.76232 0.79345 1.19811 1.19370 1.17440 1.18935 0.97080 0.90724 1.41955 0.92362 1.19019 0.99630 0.88676 1.02466 1.22185 0.98695 0.88556 1.01021 1.40162 1.30002 1.00656 1.47078 0.72262 1.18983 0.89108 0.89506 0.93681 1.18624 1.06843 0.87048 1.15770 1.20007 0.94972 0.94800 0.99927 1.23080 1.01686 0.94680 1.00459 1.23098 1.01865 1.03264 0.92737 1.24291 0.90023 1.01455 0.91749 1.77682 1.26886 0.84384 1.28720 1.47979 1.23655 1.07079 1.39087 1.20329 0.83267 0.83420 0.80367 1.90589 1.28421 1.86586 1.38698 0.89593 0.79611 0.86799 0.86959 0.88261 0.89618 0.87233 0.75698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -39.60 10.97 21.80 0.24 -39.36 16 2 C 0.04 1.75 5.16 85.18 0.44 2.19 16 3 Si 0.99 37.92 29.59 68.60 2.03 39.95 16 4 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 5 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 6 H -0.25 -8.71 7.11 99.48 0.71 -8.01 16 7 C -0.45 -25.32 8.81 23.32 0.21 -25.12 16 8 H 0.06 3.45 7.79 -2.91 -0.02 3.43 16 9 C -0.09 -4.75 5.73 -19.89 -0.11 -4.87 16 10 C 0.02 0.95 9.97 84.56 0.84 1.79 16 11 N -0.56 -20.47 5.31 -190.17 -1.01 -21.48 16 12 H 0.44 11.55 8.91 -92.71 -0.83 10.72 16 13 C 0.31 12.43 7.80 131.56 1.03 13.46 16 14 C -0.27 -8.51 5.79 -19.93 -0.12 -8.62 16 15 C -0.08 -1.70 6.25 -11.54 -0.07 -1.77 16 16 C -0.16 -2.63 10.03 30.62 0.31 -2.32 16 17 C -0.17 -3.02 10.24 30.62 0.31 -2.71 16 18 C 0.11 3.67 11.32 85.16 0.96 4.63 16 19 N -0.36 -16.34 12.63 -57.19 -0.72 -17.06 16 20 N -0.38 -18.86 3.80 -311.33 -1.18 -20.05 16 21 C 0.53 30.29 7.92 86.63 0.69 30.98 16 22 O -0.57 -36.43 17.43 -4.15 -0.07 -36.51 16 23 H 0.29 12.34 8.30 -92.71 -0.77 11.57 16 24 H 0.19 7.98 6.18 -2.91 -0.02 7.96 16 25 H 0.11 2.19 8.14 -2.38 -0.02 2.17 16 26 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.10 1.51 6.97 -2.39 -0.02 1.49 16 28 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.23 5.09 7.18 -2.91 -0.02 5.07 16 Total: -1.00 -71.69 267.95 4.14 -67.55 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: 0.37 Total: 19.30 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: 4.48 Total: 7.65 kcal Atomic # 7 Polarization: -95.27 SS G_CDS: -2.67 Total: -97.95 kcal Atomic # 8 Polarization: -36.43 SS G_CDS: -0.07 Total: -36.51 kcal Atomic # 14 Polarization: 37.92 SS G_CDS: 2.03 Total: 39.95 kcal Total: -71.69 4.14 -67.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527344022.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.648 kcal (2) G-P(sol) polarization free energy of solvation -71.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds