Wall clock time and date at job start Mon Mar 30 2020 04:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99934 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00254 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00205 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00004 * 3 2 1 7 7 C 1.38956 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99770 * 179.97438 * 7 2 1 9 9 N 1.37092 * 119.99671 * 0.27554 * 7 2 1 10 10 C 1.34783 * 119.99804 * 179.72159 * 9 7 2 11 11 O 1.21293 * 119.99741 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00004 * 180.02562 * 10 9 7 13 13 O 1.42899 * 109.46876 * 180.02562 * 12 10 9 14 14 C 1.42901 * 113.99607 * 179.97438 * 13 12 10 15 15 H 1.08995 * 109.52631 * 330.12375 * 14 13 12 16 16 C 1.53092 * 109.52301 * 90.31642 * 14 13 12 17 17 O 1.42900 * 109.41555 * 177.51485 * 16 14 13 18 18 C 1.42907 * 114.09422 * 298.83904 * 17 16 14 19 19 C 1.53083 * 109.41540 * 61.15926 * 18 17 16 20 20 C 1.53176 * 109.16481 * 302.38786 * 19 18 17 21 21 H 1.09001 * 109.61911 * 297.07340 * 20 19 18 22 22 O 1.42905 * 109.54237 * 176.84915 * 20 19 18 23 23 H 0.96991 * 119.99827 * 359.97438 * 1 2 3 24 24 H 0.97000 * 120.00481 * 359.72547 * 9 7 2 25 25 H 1.09004 * 109.46965 * 300.00192 * 12 10 9 26 26 H 1.08994 * 109.46990 * 60.00046 * 12 10 9 27 27 H 1.09007 * 109.47685 * 297.49285 * 16 14 13 28 28 H 1.09000 * 109.48379 * 57.52460 * 16 14 13 29 29 H 1.08995 * 109.48083 * 301.17271 * 18 17 16 30 30 H 1.09003 * 109.47669 * 181.14598 * 18 17 16 31 31 H 1.09007 * 109.52157 * 182.48443 * 19 18 17 32 32 H 1.09001 * 109.52508 * 62.29742 * 19 18 17 33 33 H 0.96697 * 114.00058 * 60.44674 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4402 0.7001 7 6 2.0090 -1.2034 -0.0005 8 1 3.0890 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0068 10 6 1.9974 -3.5578 -0.0130 11 8 3.2103 -3.5578 -0.0135 12 6 1.2439 -4.8629 -0.0204 13 8 2.1726 -5.9490 -0.0255 14 6 1.5580 -7.2391 -0.0322 15 1 0.5970 -7.1875 0.4794 16 6 1.3457 -7.6972 -1.4774 17 8 0.7844 -9.0113 -1.4816 18 6 1.6115 -10.0010 -0.8662 19 6 1.8345 -9.6355 0.6035 20 6 2.4664 -8.2425 0.6850 21 1 3.4451 -8.2560 0.2053 22 8 2.6108 -7.8625 2.0550 23 1 -0.4849 0.8400 0.0004 24 1 0.3535 -2.3907 -0.0068 25 1 0.6169 -4.9255 0.8690 26 1 0.6176 -4.9158 -0.9109 27 1 0.6655 -7.0098 -1.9804 28 1 2.3026 -7.7089 -1.9994 29 1 2.5718 -10.0429 -1.3801 30 1 1.1228 -10.9733 -0.9290 31 1 2.5010 -10.3653 1.0633 32 1 0.8786 -9.6330 1.1274 33 1 3.1747 -8.4553 2.5703 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686569613.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:02 Heat of formation + Delta-G solvation = -178.770786 kcal Electronic energy + Delta-G solvation = -17950.667862 eV Core-core repulsion = 14783.686712 eV Total energy + Delta-G solvation = -3166.981149 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 245.114 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.96288 -38.27808 -36.89446 -36.36401 -33.88404 -31.93284 -31.25822 -30.41563 -27.48704 -24.70906 -24.38127 -23.26749 -20.65846 -19.39609 -17.95264 -17.59100 -17.08192 -16.47482 -15.79526 -15.74440 -15.23640 -14.81009 -14.52996 -14.03932 -13.92544 -13.46184 -13.29663 -13.11448 -12.61212 -12.19873 -11.76746 -11.54366 -11.45100 -11.15804 -11.04861 -10.64714 -10.37863 -10.21620 -10.11371 -10.01180 -9.51660 -9.20277 -8.33876 -7.97224 -6.41210 -3.82308 3.19248 3.27372 3.31707 3.40747 3.78721 3.88654 4.02931 4.24291 4.49775 4.62240 4.69872 4.91108 4.97566 5.17918 5.24414 5.29855 5.34678 5.44480 5.45373 5.60219 5.66973 5.79254 5.89289 5.93743 6.23575 6.85185 7.40343 7.56152 7.58116 8.05650 8.61456 9.17992 9.52226 10.04178 10.76623 Molecular weight = 245.11amu Principal moments of inertia in cm(-1) A = 0.051237 B = 0.004380 C = 0.004225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.343703 B = 6391.140282 C = 6625.790568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.932 3.068 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.561 5.561 10 C 0.444 3.556 11 O -0.575 6.575 12 C 0.053 3.947 13 O -0.339 6.339 14 C 0.061 3.939 15 H 0.075 0.925 16 C 0.041 3.959 17 O -0.377 6.377 18 C 0.060 3.940 19 C -0.187 4.187 20 C 0.107 3.893 21 H 0.066 0.934 22 O -0.551 6.551 23 H 0.272 0.728 24 H 0.393 0.607 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.104 0.896 28 H 0.065 0.935 29 H 0.055 0.945 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.386 -18.209 -0.245 18.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.759 3.241 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.429 4.429 8 H 0.122 0.878 9 N -0.199 5.199 10 C 0.229 3.771 11 O -0.459 6.459 12 C -0.027 4.027 13 O -0.256 6.256 14 C 0.001 3.999 15 H 0.093 0.907 16 C -0.036 4.036 17 O -0.295 6.295 18 C -0.017 4.017 19 C -0.225 4.225 20 C 0.048 3.952 21 H 0.084 0.916 22 O -0.356 6.356 23 H 0.082 0.918 24 H 0.226 0.774 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.123 0.877 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.116 0.884 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -0.063 -17.569 -0.513 17.576 hybrid contribution 0.059 0.375 0.327 0.501 sum -0.004 -17.194 -0.185 17.195 Atomic orbital electron populations 1.69613 1.05953 1.28232 1.50489 1.25271 0.95657 0.99719 0.97225 0.85827 0.79246 0.80636 0.78405 1.20364 1.20890 1.19353 1.19716 0.93429 0.81997 1.47716 0.87814 1.41745 1.09218 1.04247 1.64641 1.19508 0.88363 0.84281 0.84963 1.90543 1.13697 1.86935 1.54692 1.22273 0.91988 0.87542 1.00911 1.88095 1.31300 1.11540 1.94706 1.22716 0.96900 0.84940 0.95303 0.90692 1.23145 1.00344 0.84113 0.95977 1.87961 1.45459 1.16993 1.79129 1.22582 0.95568 0.92264 0.91315 1.23004 1.03171 0.97483 0.98808 1.21886 0.98253 0.91598 0.83485 0.91636 1.86653 1.72849 1.55304 1.20782 0.91815 0.77350 0.91552 0.91855 0.87750 0.91707 0.92711 0.88361 0.90057 0.89940 0.77849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.77 13.05 55.50 0.72 -24.04 16 2 C 0.02 0.62 5.50 -17.46 -0.10 0.53 16 3 Si 0.93 21.28 29.55 -169.99 -5.02 16.26 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.30 -8.55 9.68 -14.93 -0.14 -8.69 16 8 H 0.10 3.11 7.16 -52.49 -0.38 2.73 16 9 N -0.56 -14.72 5.29 -10.96 -0.06 -14.78 16 10 C 0.44 11.25 7.86 -10.98 -0.09 11.17 16 11 O -0.58 -16.98 16.08 -14.36 -0.23 -17.21 16 12 C 0.05 1.03 6.23 36.01 0.22 1.26 16 13 O -0.34 -6.63 9.47 -60.20 -0.57 -7.20 16 14 C 0.06 0.89 2.48 -26.59 -0.07 0.83 16 15 H 0.08 1.08 7.79 -51.93 -0.40 0.68 16 16 C 0.04 0.52 6.47 37.20 0.24 0.77 16 17 O -0.38 -4.50 10.77 -35.23 -0.38 -4.88 16 18 C 0.06 0.53 6.84 37.20 0.25 0.78 16 19 C -0.19 -1.66 5.77 -26.60 -0.15 -1.81 16 20 C 0.11 1.34 3.23 -26.55 -0.09 1.26 16 21 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 22 O -0.55 -7.53 13.27 -41.48 -0.55 -8.08 16 23 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 24 H 0.39 9.72 7.90 -40.82 -0.32 9.39 16 25 H 0.07 1.18 8.09 -51.93 -0.42 0.76 16 26 H 0.06 1.05 7.96 -51.93 -0.41 0.63 16 27 H 0.10 1.26 7.96 -51.93 -0.41 0.85 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.52 8.14 -51.92 -0.42 0.10 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.37 3.16 9.09 45.56 0.41 3.57 16 LS Contribution 285.96 15.07 4.31 4.31 Total: -1.00 -34.95 285.96 -5.30 -40.25 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -3.61 Total: 9.30 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: 0.09 Total: 6.07 kcal Atomic # 7 Polarization: -39.48 SS G_CDS: 0.67 Total: -38.82 kcal Atomic # 8 Polarization: -35.64 SS G_CDS: -1.73 Total: -37.38 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -34.95 -5.30 -40.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686569613.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.519 kcal (2) G-P(sol) polarization free energy of solvation -34.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds