Wall clock time and date at job start Mon Mar 30 2020 04:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99934 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00254 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00205 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00004 * 3 2 1 7 7 C 1.38956 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99770 * 179.97438 * 7 2 1 9 9 N 1.37092 * 119.99671 * 0.27554 * 7 2 1 10 10 C 1.34783 * 119.99804 * 179.72159 * 9 7 2 11 11 O 1.21293 * 119.99741 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00004 * 180.02562 * 10 9 7 13 13 O 1.42899 * 109.46876 * 180.02562 * 12 10 9 14 14 C 1.42901 * 113.99607 * 179.97438 * 13 12 10 15 15 H 1.08995 * 109.52631 * 330.12375 * 14 13 12 16 16 C 1.53092 * 109.52301 * 90.31642 * 14 13 12 17 17 O 1.42900 * 109.41555 * 177.51485 * 16 14 13 18 18 C 1.42907 * 114.09422 * 298.83904 * 17 16 14 19 19 C 1.53083 * 109.41540 * 61.15926 * 18 17 16 20 20 C 1.53176 * 109.16481 * 302.38786 * 19 18 17 21 21 H 1.09001 * 109.61911 * 297.07340 * 20 19 18 22 22 O 1.42905 * 109.54237 * 176.84915 * 20 19 18 23 23 H 0.96991 * 119.99827 * 359.97438 * 1 2 3 24 24 H 0.97000 * 120.00481 * 359.72547 * 9 7 2 25 25 H 1.09004 * 109.46965 * 300.00192 * 12 10 9 26 26 H 1.08994 * 109.46990 * 60.00046 * 12 10 9 27 27 H 1.09007 * 109.47685 * 297.49285 * 16 14 13 28 28 H 1.09000 * 109.48379 * 57.52460 * 16 14 13 29 29 H 1.08995 * 109.48083 * 301.17271 * 18 17 16 30 30 H 1.09003 * 109.47669 * 181.14598 * 18 17 16 31 31 H 1.09007 * 109.52157 * 182.48443 * 19 18 17 32 32 H 1.09001 * 109.52508 * 62.29742 * 19 18 17 33 33 H 0.96697 * 114.00058 * 60.44674 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4402 0.7001 7 6 2.0090 -1.2034 -0.0005 8 1 3.0890 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0068 10 6 1.9974 -3.5578 -0.0130 11 8 3.2103 -3.5578 -0.0135 12 6 1.2439 -4.8629 -0.0204 13 8 2.1726 -5.9490 -0.0255 14 6 1.5580 -7.2391 -0.0322 15 1 0.5970 -7.1875 0.4794 16 6 1.3457 -7.6972 -1.4774 17 8 0.7844 -9.0113 -1.4816 18 6 1.6115 -10.0010 -0.8662 19 6 1.8345 -9.6355 0.6035 20 6 2.4664 -8.2425 0.6850 21 1 3.4451 -8.2560 0.2053 22 8 2.6108 -7.8625 2.0550 23 1 -0.4849 0.8400 0.0004 24 1 0.3535 -2.3907 -0.0068 25 1 0.6169 -4.9255 0.8690 26 1 0.6176 -4.9158 -0.9109 27 1 0.6655 -7.0098 -1.9804 28 1 2.3026 -7.7089 -1.9994 29 1 2.5718 -10.0429 -1.3801 30 1 1.1228 -10.9733 -0.9290 31 1 2.5010 -10.3653 1.0633 32 1 0.8786 -9.6330 1.1274 33 1 3.1747 -8.4553 2.5703 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686569613.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:02 Heat of formation + Delta-G solvation = -207.850524 kcal Electronic energy + Delta-G solvation = -17951.928854 eV Core-core repulsion = 14783.686712 eV Total energy + Delta-G solvation = -3168.242141 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 245.114 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.00657 -40.10448 -38.15534 -37.50854 -35.99798 -33.37272 -32.79077 -31.49608 -29.15055 -26.41077 -25.52412 -24.23124 -21.72903 -21.22967 -20.03145 -18.57598 -18.39728 -17.56603 -17.37439 -16.98649 -16.57733 -16.37701 -15.94437 -15.70467 -15.19680 -14.75477 -14.56819 -14.34201 -13.96468 -13.55594 -13.47514 -13.01202 -12.92862 -12.46755 -12.46461 -12.12351 -12.02740 -11.68751 -11.56723 -11.06492 -10.95180 -10.44204 -10.35749 -10.08234 -8.50698 -6.00835 1.36894 1.41623 1.54772 1.93713 2.08700 2.38423 2.86396 3.08580 3.15090 3.42446 3.62646 3.75655 3.92347 4.00332 4.07748 4.13829 4.32066 4.36191 4.46490 4.53486 4.65692 4.68460 4.77292 4.93823 5.12257 5.37442 5.82327 5.97876 6.21969 6.54521 6.84364 7.06466 7.45608 8.01385 8.66708 Molecular weight = 245.11amu Principal moments of inertia in cm(-1) A = 0.051237 B = 0.004380 C = 0.004225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.343703 B = 6391.140282 C = 6625.790568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.009 4.009 3 Si 0.997 3.003 4 H -0.268 1.268 5 H -0.268 1.268 6 H -0.273 1.273 7 C -0.340 4.340 8 H 0.079 0.921 9 N -0.564 5.564 10 C 0.435 3.565 11 O -0.625 6.625 12 C 0.066 3.934 13 O -0.371 6.371 14 C 0.051 3.949 15 H 0.076 0.924 16 C 0.048 3.952 17 O -0.388 6.388 18 C 0.051 3.949 19 C -0.173 4.173 20 C 0.102 3.898 21 H 0.061 0.939 22 O -0.579 6.579 23 H 0.280 0.720 24 H 0.399 0.601 25 H 0.086 0.914 26 H 0.096 0.904 27 H 0.107 0.893 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.125 0.875 31 H 0.112 0.888 32 H 0.078 0.922 33 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.044 -19.106 -0.322 19.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.209 4.209 3 Si 0.820 3.180 4 H -0.194 1.194 5 H -0.192 1.192 6 H -0.198 1.198 7 C -0.469 4.469 8 H 0.097 0.903 9 N -0.201 5.201 10 C 0.222 3.778 11 O -0.512 6.512 12 C -0.014 4.014 13 O -0.290 6.290 14 C -0.007 4.007 15 H 0.094 0.906 16 C -0.029 4.029 17 O -0.306 6.306 18 C -0.025 4.025 19 C -0.210 4.210 20 C 0.043 3.957 21 H 0.079 0.921 22 O -0.387 6.387 23 H 0.090 0.910 24 H 0.234 0.766 25 H 0.103 0.897 26 H 0.114 0.886 27 H 0.125 0.875 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.143 0.857 31 H 0.130 0.870 32 H 0.097 0.903 33 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -0.758 -18.498 -0.585 18.522 hybrid contribution 0.255 0.577 0.378 0.735 sum -0.503 -17.921 -0.207 17.929 Atomic orbital electron populations 1.69666 1.06867 1.29613 1.49577 1.26090 0.96598 1.02445 0.95772 0.84879 0.77844 0.76476 0.78823 1.19360 1.19224 1.19816 1.19693 0.92793 0.83763 1.50626 0.90307 1.41787 1.09438 1.04302 1.64614 1.20537 0.88151 0.85921 0.83144 1.90498 1.16097 1.87953 1.56661 1.22096 0.91203 0.84770 1.03290 1.88047 1.32606 1.13187 1.95112 1.23064 0.97335 0.83242 0.97059 0.90600 1.23004 1.00430 0.84912 0.94558 1.87953 1.46325 1.16832 1.79537 1.22886 0.96164 0.92443 0.91007 1.22916 1.03306 0.95654 0.99165 1.21997 0.98012 0.92865 0.82806 0.92056 1.86592 1.73681 1.56899 1.21554 0.91013 0.76617 0.89660 0.88617 0.87527 0.91826 0.91701 0.85746 0.86970 0.90302 0.75520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.70 13.05 21.67 0.28 -49.42 16 2 C -0.01 -0.47 5.50 84.93 0.47 0.00 16 3 Si 1.00 43.24 29.55 68.60 2.03 45.26 16 4 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 5 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 7 C -0.34 -19.85 9.68 84.04 0.81 -19.03 16 8 H 0.08 4.92 7.16 -2.91 -0.02 4.90 16 9 N -0.56 -30.15 5.29 -306.97 -1.62 -31.77 16 10 C 0.44 22.54 7.86 87.66 0.69 23.23 16 11 O -0.63 -38.25 16.08 15.97 0.26 -37.99 16 12 C 0.07 2.55 6.23 71.24 0.44 2.99 16 13 O -0.37 -14.52 9.47 -125.10 -1.19 -15.71 16 14 C 0.05 1.47 2.48 30.69 0.08 1.54 16 15 H 0.08 2.11 7.79 -2.39 -0.02 2.09 16 16 C 0.05 1.17 6.47 72.01 0.47 1.64 16 17 O -0.39 -8.46 10.77 -148.98 -1.60 -10.07 16 18 C 0.05 0.76 6.84 72.01 0.49 1.25 16 19 C -0.17 -2.61 5.77 30.68 0.18 -2.43 16 20 C 0.10 2.44 3.23 30.71 0.10 2.54 16 21 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 22 O -0.58 -15.32 13.27 -143.01 -1.90 -17.22 16 23 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 24 H 0.40 19.90 7.90 -92.71 -0.73 19.17 16 25 H 0.09 2.95 8.09 -2.38 -0.02 2.93 16 26 H 0.10 3.04 7.96 -2.39 -0.02 3.02 16 27 H 0.11 2.46 7.96 -2.38 -0.02 2.44 16 28 H 0.06 1.53 8.14 -2.39 -0.02 1.52 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.11 1.02 8.14 -2.38 -0.02 1.00 16 32 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.39 6.16 9.09 -74.06 -0.67 5.49 16 Total: -1.00 -76.22 285.96 -0.29 -76.51 By element: Atomic # 1 Polarization: 28.96 SS G_CDS: -0.27 Total: 28.69 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: 3.72 Total: 11.71 kcal Atomic # 7 Polarization: -79.85 SS G_CDS: -1.34 Total: -81.19 kcal Atomic # 8 Polarization: -76.56 SS G_CDS: -4.43 Total: -80.99 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Total: -76.22 -0.29 -76.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686569613.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.342 kcal (2) G-P(sol) polarization free energy of solvation -76.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds