Wall clock time and date at job start Mon Mar 30 2020 04:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.88166 * 300.42139 * 12 11 10 14 14 O 1.20821 * 120.00025 * 264.30398 * 13 12 11 15 15 O 1.34227 * 119.99391 * 84.29751 * 13 12 11 16 16 C 1.54326 * 109.89193 * 179.22317 * 12 11 10 17 17 C 1.55135 * 103.01867 * 218.31253 * 16 12 11 18 18 H 1.09009 * 111.02078 * 277.54492 * 17 16 12 19 19 F 1.39899 * 110.98951 * 153.74618 * 17 16 12 20 20 C 1.54902 * 101.65775 * 35.65245 * 17 16 12 21 21 N 1.47443 * 109.88882 * 61.45489 * 12 11 10 22 22 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 24 24 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 25 25 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 26 26 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 27 27 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 28 28 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 29 29 H 0.96700 * 116.99986 * 180.02562 * 15 13 12 30 30 H 1.09003 * 110.70402 * 336.69814 * 16 12 11 31 31 H 1.09007 * 110.70256 * 99.92706 * 16 12 11 32 32 H 1.08994 * 110.37611 * 204.09960 * 20 17 16 33 33 H 1.08999 * 110.46746 * 81.80632 * 20 17 16 34 34 H 1.00901 * 110.99770 * 240.68340 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5513 -2.6368 -0.0001 12 6 6.0613 -4.0793 0.0004 13 6 5.5555 -4.8013 1.2228 14 8 6.2487 -4.8773 2.2094 15 8 4.3349 -5.3596 1.2153 16 6 7.6043 -4.0907 -0.0193 17 6 7.9331 -5.2838 -0.9548 18 1 7.8909 -6.2288 -0.4130 19 9 9.1809 -5.1139 -1.5642 20 6 6.7898 -5.1896 -1.9958 21 7 5.6038 -4.7735 -1.2173 22 1 -0.4850 0.8401 -0.0004 23 1 3.8751 -0.6798 -0.8895 24 1 3.8745 -0.6810 0.8905 25 1 3.6577 -3.1507 0.8897 26 1 3.6584 -3.1504 -0.8902 27 1 5.9147 -2.1229 -0.8901 28 1 5.9147 -2.1231 0.8899 29 1 4.0540 -5.8116 2.0227 30 1 7.9914 -3.1591 -0.4322 31 1 8.0012 -4.2645 0.9809 32 1 6.6177 -6.1609 -2.4595 33 1 7.0261 -4.4440 -2.7550 34 1 5.0266 -5.5680 -0.9853 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707446286.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:15 Heat of formation + Delta-G solvation = -151.345233 kcal Electronic energy + Delta-G solvation = -18294.042357 eV Core-core repulsion = 15140.623258 eV Total energy + Delta-G solvation = -3153.419099 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 245.121 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -47.86890 -40.96663 -38.14987 -36.25010 -34.47085 -32.29855 -30.30357 -29.75853 -26.71203 -23.98118 -23.30605 -21.62653 -20.10654 -19.66680 -18.35527 -17.68622 -16.75818 -16.60432 -15.83403 -15.47225 -15.19693 -14.49969 -14.17373 -14.12955 -13.57381 -13.24383 -12.83813 -12.54556 -12.46070 -12.38085 -11.89658 -11.64624 -11.58873 -11.14226 -11.07460 -10.84602 -10.69560 -10.57494 -9.87708 -9.62110 -9.50589 -9.12430 -8.73385 -8.48394 -5.99190 -3.96134 2.03844 2.82687 3.34139 3.41278 3.45279 3.64067 4.01012 4.20233 4.30969 4.48333 4.49882 4.98401 5.08495 5.17258 5.28029 5.35136 5.49445 5.61274 5.71412 5.86513 5.90455 6.25798 6.33309 6.46155 6.65997 6.76627 7.01694 7.04347 7.41827 7.53595 7.78981 7.85897 8.60980 9.07130 9.64062 11.14511 Molecular weight = 245.12amu Principal moments of inertia in cm(-1) A = 0.030715 B = 0.005639 C = 0.005288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.394620 B = 4964.559087 C = 5294.179126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.879 3.121 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.515 4.515 8 H 0.072 0.928 9 C -0.015 4.015 10 C -0.099 4.099 11 C -0.100 4.100 12 C 0.126 3.874 13 C 0.476 3.524 14 O -0.516 6.516 15 O -0.500 6.500 16 C -0.156 4.156 17 C 0.055 3.945 18 H 0.091 0.909 19 F -0.201 7.201 20 C 0.024 3.976 21 N -0.651 5.651 22 H 0.262 0.738 23 H 0.011 0.989 24 H 0.011 0.989 25 H 0.051 0.949 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.065 0.935 29 H 0.411 0.589 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.356 0.644 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.937 -12.071 -1.133 19.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.553 4.553 8 H 0.090 0.910 9 C -0.052 4.052 10 C -0.137 4.137 11 C -0.138 4.138 12 C 0.034 3.966 13 C 0.316 3.684 14 O -0.404 6.404 15 O -0.311 6.311 16 C -0.195 4.195 17 C 0.017 3.983 18 H 0.108 0.892 19 F -0.182 7.182 20 C -0.106 4.106 21 N -0.283 5.283 22 H 0.071 0.929 23 H 0.030 0.970 24 H 0.029 0.971 25 H 0.070 0.930 26 H 0.090 0.910 27 H 0.101 0.899 28 H 0.084 0.916 29 H 0.270 0.730 30 H 0.122 0.878 31 H 0.121 0.879 32 H 0.102 0.898 33 H 0.115 0.885 34 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 14.960 -11.190 -1.597 18.751 hybrid contribution 0.515 -0.090 1.125 1.240 sum 15.475 -11.280 -0.473 19.156 Atomic orbital electron populations 1.69921 1.06288 1.26739 1.51610 1.25043 0.94718 0.99132 0.94747 0.86785 0.80348 0.83717 0.78464 1.20314 1.21515 1.19086 1.21163 0.89591 0.94383 1.50182 0.91015 1.19585 0.97147 0.92530 0.95966 1.21470 0.90439 0.99686 1.02095 1.21816 0.99681 0.89617 1.02731 1.21649 0.93464 0.97099 0.84409 1.23868 0.78959 0.75365 0.90163 1.90693 1.57661 1.56650 1.35391 1.84583 1.33808 1.66728 1.45989 1.23516 0.93517 0.99982 1.02465 1.23281 0.80553 0.99684 0.94784 0.89151 1.92812 1.43807 1.96903 1.84685 1.23577 0.88102 1.02341 0.96534 1.61669 1.17419 1.31113 1.18085 0.92861 0.97037 0.97093 0.93025 0.91006 0.89861 0.91620 0.73028 0.87815 0.87884 0.89843 0.88472 0.82469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.28 13.96 55.43 0.77 -27.51 16 2 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 22.05 27.47 -169.99 -4.67 17.38 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 7 C -0.52 -14.86 9.66 -34.44 -0.33 -15.19 16 8 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 9 C -0.01 -0.36 4.04 -27.88 -0.11 -0.47 16 10 C -0.10 -1.94 4.60 -26.74 -0.12 -2.06 16 11 C -0.10 -1.56 4.33 -26.74 -0.12 -1.68 16 12 C 0.13 1.62 0.87 -131.76 -0.11 1.51 16 13 C 0.48 6.40 6.31 36.01 0.23 6.62 16 14 O -0.52 -7.97 16.34 -18.75 -0.31 -8.28 16 15 O -0.50 -5.83 11.08 -39.25 -0.44 -6.26 16 16 C -0.16 -1.76 5.77 -24.91 -0.14 -1.91 16 17 C 0.05 0.55 4.85 -24.60 -0.12 0.43 16 18 H 0.09 0.79 8.14 -51.92 -0.42 0.37 16 19 F -0.20 -2.30 17.24 2.25 0.04 -2.26 16 20 C 0.02 0.23 7.38 -2.30 -0.02 0.22 16 21 N -0.65 -7.61 6.31 -98.29 -0.62 -8.23 16 22 H 0.26 7.64 8.31 -40.82 -0.34 7.31 16 23 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 24 H 0.01 0.26 7.20 -51.93 -0.37 -0.11 16 25 H 0.05 1.02 6.41 -51.93 -0.33 0.69 16 26 H 0.07 1.44 7.67 -51.93 -0.40 1.04 16 27 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.41 3.06 9.10 45.56 0.41 3.47 16 30 H 0.10 1.12 7.85 -51.93 -0.41 0.72 16 31 H 0.10 1.22 6.79 -51.92 -0.35 0.86 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.36 3.84 7.46 -39.29 -0.29 3.55 16 LS Contribution 283.50 15.07 4.27 4.27 Total: -1.00 -33.41 283.50 -5.73 -39.14 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -3.84 Total: 2.50 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: -0.95 Total: -10.74 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: 0.15 Total: -35.74 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: -0.74 Total: -14.54 kcal Atomic # 9 Polarization: -2.30 SS G_CDS: 0.04 Total: -2.26 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.67 Total: 17.38 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -33.41 -5.73 -39.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707446286.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.207 kcal (2) G-P(sol) polarization free energy of solvation -33.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds