Wall clock time and date at job start Mon Mar 30 2020 04:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.88166 * 300.42139 * 12 11 10 14 14 O 1.20821 * 120.00025 * 264.30398 * 13 12 11 15 15 O 1.34227 * 119.99391 * 84.29751 * 13 12 11 16 16 C 1.54326 * 109.89193 * 179.22317 * 12 11 10 17 17 C 1.55135 * 103.01867 * 218.31253 * 16 12 11 18 18 H 1.09009 * 111.02078 * 277.54492 * 17 16 12 19 19 F 1.39899 * 110.98951 * 153.74618 * 17 16 12 20 20 C 1.54902 * 101.65775 * 35.65245 * 17 16 12 21 21 N 1.47443 * 109.88882 * 61.45489 * 12 11 10 22 22 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 24 24 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 25 25 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 26 26 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 27 27 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 28 28 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 29 29 H 0.96700 * 116.99986 * 180.02562 * 15 13 12 30 30 H 1.09003 * 110.70402 * 336.69814 * 16 12 11 31 31 H 1.09007 * 110.70256 * 99.92706 * 16 12 11 32 32 H 1.08994 * 110.37611 * 204.09960 * 20 17 16 33 33 H 1.08999 * 110.46746 * 81.80632 * 20 17 16 34 34 H 1.00901 * 110.99770 * 240.68340 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5513 -2.6368 -0.0001 12 6 6.0613 -4.0793 0.0004 13 6 5.5555 -4.8013 1.2228 14 8 6.2487 -4.8773 2.2094 15 8 4.3349 -5.3596 1.2153 16 6 7.6043 -4.0907 -0.0193 17 6 7.9331 -5.2838 -0.9548 18 1 7.8909 -6.2288 -0.4130 19 9 9.1809 -5.1139 -1.5642 20 6 6.7898 -5.1896 -1.9958 21 7 5.6038 -4.7735 -1.2173 22 1 -0.4850 0.8401 -0.0004 23 1 3.8751 -0.6798 -0.8895 24 1 3.8745 -0.6810 0.8905 25 1 3.6577 -3.1507 0.8897 26 1 3.6584 -3.1504 -0.8902 27 1 5.9147 -2.1229 -0.8901 28 1 5.9147 -2.1231 0.8899 29 1 4.0540 -5.8116 2.0227 30 1 7.9914 -3.1591 -0.4322 31 1 8.0012 -4.2645 0.9809 32 1 6.6177 -6.1609 -2.4595 33 1 7.0261 -4.4440 -2.7550 34 1 5.0266 -5.5680 -0.9853 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707446286.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:15 Heat of formation + Delta-G solvation = -175.860489 kcal Electronic energy + Delta-G solvation = -18295.105418 eV Core-core repulsion = 15140.623258 eV Total energy + Delta-G solvation = -3154.482160 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 245.121 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.69664 -41.98921 -39.11360 -37.27904 -36.15235 -34.23164 -31.59765 -30.81712 -28.24024 -24.94844 -24.87855 -22.71350 -21.60090 -20.81137 -19.35200 -18.82205 -18.66198 -17.55625 -16.91999 -16.46343 -16.19609 -16.05466 -15.59264 -15.35179 -14.81114 -14.53369 -14.34519 -13.78212 -13.64977 -13.45152 -13.26129 -13.10463 -12.78050 -12.54317 -12.37222 -12.15463 -11.86765 -11.76494 -11.65323 -11.37028 -11.26004 -11.12168 -10.72504 -9.66849 -8.26060 -6.29040 0.99039 1.37335 1.39048 1.51043 1.90131 2.38842 2.75819 3.09532 3.17915 3.28141 3.49790 3.76294 3.98999 4.18527 4.25318 4.38849 4.47767 4.57046 4.66801 4.77877 4.87695 5.01056 5.09837 5.10418 5.20147 5.40320 5.58554 5.64808 5.73057 5.75012 6.19785 6.34831 6.79265 6.87355 7.35255 8.90938 Molecular weight = 245.12amu Principal moments of inertia in cm(-1) A = 0.030715 B = 0.005639 C = 0.005288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.394620 B = 4964.559087 C = 5294.179126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.001 3.999 3 Si 0.950 3.050 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.247 1.247 7 C -0.527 4.527 8 H 0.031 0.969 9 C -0.014 4.014 10 C -0.087 4.087 11 C -0.095 4.095 12 C 0.129 3.871 13 C 0.478 3.522 14 O -0.539 6.539 15 O -0.502 6.502 16 C -0.154 4.154 17 C 0.061 3.939 18 H 0.105 0.895 19 F -0.209 7.209 20 C 0.027 3.973 21 N -0.661 5.661 22 H 0.265 0.735 23 H 0.019 0.981 24 H 0.013 0.987 25 H 0.042 0.958 26 H 0.063 0.937 27 H 0.092 0.908 28 H 0.067 0.933 29 H 0.428 0.572 30 H 0.108 0.892 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.095 0.905 34 H 0.361 0.639 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.896 -11.925 -1.549 20.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.195 4.195 3 Si 0.773 3.227 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.171 1.171 7 C -0.565 4.565 8 H 0.050 0.950 9 C -0.052 4.052 10 C -0.125 4.125 11 C -0.133 4.133 12 C 0.037 3.963 13 C 0.320 3.680 14 O -0.428 6.428 15 O -0.315 6.315 16 C -0.193 4.193 17 C 0.023 3.977 18 H 0.123 0.877 19 F -0.189 7.189 20 C -0.102 4.102 21 N -0.294 5.294 22 H 0.074 0.926 23 H 0.038 0.962 24 H 0.031 0.969 25 H 0.061 0.939 26 H 0.082 0.918 27 H 0.110 0.890 28 H 0.085 0.915 29 H 0.290 0.710 30 H 0.127 0.873 31 H 0.116 0.884 32 H 0.126 0.874 33 H 0.113 0.887 34 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 16.922 -11.076 -2.014 20.324 hybrid contribution -0.205 -0.227 1.255 1.292 sum 16.717 -11.303 -0.759 20.194 Atomic orbital electron populations 1.70078 1.08300 1.28012 1.53112 1.26037 0.95612 1.03531 0.94327 0.85662 0.79475 0.78293 0.79246 1.19030 1.21146 1.17080 1.21529 0.92295 0.92985 1.49721 0.95017 1.19567 0.93818 0.95598 0.96171 1.21259 0.93380 0.96560 1.01307 1.21689 0.96428 0.91902 1.03284 1.21484 0.94462 0.95523 0.84838 1.23970 0.79038 0.75093 0.89925 1.90685 1.58312 1.57654 1.36168 1.84550 1.33052 1.66592 1.47289 1.23476 0.92122 1.01009 1.02658 1.23300 0.80187 0.99662 0.94573 0.87678 1.92800 1.44382 1.96951 1.84813 1.23622 0.86983 1.03578 0.96016 1.61615 1.18564 1.31656 1.17592 0.92634 0.96217 0.96878 0.93906 0.91806 0.88967 0.91479 0.71017 0.87340 0.88390 0.87395 0.88710 0.81937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.72 13.96 21.45 0.30 -60.42 16 2 C 0.00 0.06 5.47 84.66 0.46 0.53 16 3 Si 0.95 44.87 27.47 68.60 1.88 46.76 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 6 H -0.25 -10.84 6.54 99.48 0.65 -10.19 16 7 C -0.53 -30.89 9.66 25.60 0.25 -30.64 16 8 H 0.03 2.04 7.99 -2.91 -0.02 2.02 16 9 C -0.01 -0.67 4.04 29.85 0.12 -0.55 16 10 C -0.09 -3.35 4.60 30.59 0.14 -3.21 16 11 C -0.09 -2.79 4.33 30.59 0.13 -2.66 16 12 C 0.13 3.10 0.87 3.13 0.00 3.10 16 13 C 0.48 12.20 6.31 71.24 0.45 12.65 16 14 O -0.54 -15.97 16.34 21.98 0.36 -15.61 16 15 O -0.50 -11.14 11.08 -51.39 -0.57 -11.71 16 16 C -0.15 -3.16 5.77 31.78 0.18 -2.98 16 17 C 0.06 1.05 4.85 31.98 0.16 1.20 16 18 H 0.11 1.54 8.14 -2.38 -0.02 1.53 16 19 F -0.21 -4.27 17.24 44.97 0.78 -3.50 16 20 C 0.03 0.45 7.38 86.77 0.64 1.09 16 21 N -0.66 -14.15 6.31 -464.88 -2.93 -17.09 16 22 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 23 H 0.02 0.89 7.57 -2.39 -0.02 0.87 16 24 H 0.01 0.60 7.20 -2.39 -0.02 0.59 16 25 H 0.04 1.69 6.41 -2.39 -0.02 1.67 16 26 H 0.06 2.53 7.67 -2.39 -0.02 2.51 16 27 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 28 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.43 5.91 9.10 -74.06 -0.67 5.23 16 30 H 0.11 2.11 7.85 -2.39 -0.02 2.09 16 31 H 0.10 2.14 6.79 -2.38 -0.02 2.13 16 32 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.36 7.11 7.46 -89.69 -0.67 6.44 16 Total: -1.00 -71.78 283.50 2.08 -69.70 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -0.27 Total: 13.32 kcal Atomic # 6 Polarization: -23.98 SS G_CDS: 2.54 Total: -21.45 kcal Atomic # 7 Polarization: -74.88 SS G_CDS: -2.63 Total: -77.51 kcal Atomic # 8 Polarization: -27.11 SS G_CDS: -0.21 Total: -27.32 kcal Atomic # 9 Polarization: -4.27 SS G_CDS: 0.78 Total: -3.50 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.88 Total: 46.76 kcal Total: -71.78 2.08 -69.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707446286.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.159 kcal (2) G-P(sol) polarization free energy of solvation -71.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds