Wall clock time and date at job start Mon Mar 30 2020 03:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36838 * 119.99914 * 2 1 4 4 H 1.07998 * 120.00147 * 156.21411 * 3 2 1 5 5 C 1.39046 * 119.99930 * 335.93824 * 3 2 1 6 6 N 1.31372 * 120.00093 * 339.10851 * 5 3 2 7 7 Si 1.86799 * 120.00017 * 159.10769 * 5 3 2 8 8 H 1.48498 * 109.46927 * 94.96424 * 7 5 3 9 9 H 1.48497 * 109.47069 * 214.96607 * 7 5 3 10 10 H 1.48501 * 109.47013 * 334.96424 * 7 5 3 11 11 C 1.34774 * 120.00011 * 180.02562 * 2 1 3 12 12 O 1.21689 * 119.99580 * 176.38411 * 11 2 1 13 13 C 1.47099 * 120.00065 * 356.38290 * 11 2 1 14 14 C 1.39060 * 120.91159 * 44.42707 * 13 11 2 15 15 C 1.39732 * 119.17980 * 179.75107 * 14 13 11 16 16 C 1.35108 * 121.27557 * 0.51812 * 15 14 13 17 17 N 1.36259 * 121.78473 * 359.75561 * 16 15 14 18 18 N 1.40079 * 132.47786 * 179.97438 * 17 16 15 19 19 C 1.31340 * 108.88361 * 180.02562 * 18 17 16 20 20 C 1.38891 * 108.94129 * 359.97438 * 19 18 17 21 21 C 1.37168 * 120.19517 * 359.97438 * 17 16 15 22 22 H 1.09003 * 109.47253 * 93.86242 * 1 2 3 23 23 H 1.09002 * 109.47211 * 213.86484 * 1 2 3 24 24 H 1.09005 * 109.47453 * 333.86311 * 1 2 3 25 25 H 0.96994 * 120.00618 * 179.97438 * 6 5 3 26 26 H 1.07997 * 120.41188 * 359.97438 * 14 13 11 27 27 H 1.07996 * 119.36251 * 180.27472 * 15 14 13 28 28 H 1.08002 * 119.10851 * 179.74419 * 16 15 14 29 29 H 1.08003 * 125.52825 * 180.02562 * 19 18 17 30 30 H 1.08002 * 126.22392 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1492 1.1851 0.0000 4 1 3.1603 1.2248 0.3772 5 6 1.5445 2.3369 -0.4910 6 7 0.5216 2.2438 -1.3100 7 14 2.1867 4.0168 0.0141 8 1 3.1441 4.5087 -1.0089 9 1 1.0513 4.9672 0.1272 10 1 2.8751 3.9097 1.3256 11 6 2.1389 -1.1672 -0.0005 12 8 3.3539 -1.1681 -0.0670 13 6 1.4056 -2.4399 0.0793 14 6 0.2667 -2.6575 -0.6884 15 6 -0.3988 -3.8820 -0.5880 16 6 0.0372 -4.8510 0.2465 17 7 1.1442 -4.6845 1.0234 18 7 1.7845 -5.5186 1.9488 19 6 2.8272 -4.8881 2.4391 20 6 2.9075 -3.6294 1.8574 21 6 1.8516 -3.5104 0.9738 22 1 -0.3634 -0.0692 -1.0253 23 1 -0.3634 -0.8533 0.5727 24 1 -0.3634 0.9226 0.4527 25 1 0.0996 3.0472 -1.6523 26 1 -0.0969 -1.8909 -1.3567 27 1 -1.2810 -4.0559 -1.1862 28 1 -0.5065 -5.7827 0.2994 29 1 3.5117 -5.2844 3.1745 30 1 3.6585 -2.8799 2.0588 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723503494.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:47 Heat of formation + Delta-G solvation = 89.544601 kcal Electronic energy + Delta-G solvation = -17225.536781 eV Core-core repulsion = 14409.792331 eV Total energy + Delta-G solvation = -2815.744450 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.53851 -38.57713 -36.58460 -34.75578 -32.58318 -31.50916 -30.33179 -28.29065 -26.33984 -25.25138 -23.46500 -22.28358 -21.34994 -19.38382 -17.12086 -16.88873 -16.75669 -15.79384 -15.39276 -15.12463 -14.75505 -14.25112 -13.91753 -13.42491 -13.19667 -12.69402 -12.29595 -11.89694 -11.67121 -11.55881 -11.40952 -11.18462 -10.91058 -10.54508 -10.50141 -10.41368 -9.83587 -9.13081 -9.06986 -8.54716 -7.79584 -7.24208 -6.51661 -3.96994 0.86042 1.42518 2.49919 3.01017 3.08404 3.19497 3.25907 3.41601 3.99843 4.08272 4.45721 4.66612 4.93787 4.97419 4.98229 5.21448 5.43256 5.67173 5.78117 5.95248 6.12481 6.20116 6.33732 6.49461 6.60845 6.64549 6.91656 6.96630 7.13394 7.43941 7.81985 8.00615 8.35029 9.05092 9.25005 9.85822 10.53910 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.037896 B = 0.006673 C = 0.005908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.682847 B = 4195.094981 C = 4737.812166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.423 5.423 3 C -0.308 4.308 4 H 0.103 0.897 5 C 0.036 3.964 6 N -0.865 5.865 7 Si 0.924 3.076 8 H -0.276 1.276 9 H -0.281 1.281 10 H -0.267 1.267 11 C 0.480 3.520 12 O -0.578 6.578 13 C -0.077 4.077 14 C -0.080 4.080 15 C -0.158 4.158 16 C 0.099 3.901 17 N -0.281 5.281 18 N -0.331 5.331 19 C 0.070 3.930 20 C -0.265 4.265 21 C 0.128 3.872 22 H 0.058 0.942 23 H 0.036 0.964 24 H 0.069 0.931 25 H 0.271 0.729 26 H 0.150 0.850 27 H 0.153 0.847 28 H 0.161 0.839 29 H 0.190 0.810 30 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.941 -8.543 2.672 10.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.140 5.140 3 C -0.435 4.435 4 H 0.121 0.879 5 C -0.170 4.170 6 N -0.502 5.502 7 Si 0.750 3.250 8 H -0.202 1.202 9 H -0.206 1.206 10 H -0.191 1.191 11 C 0.269 3.731 12 O -0.463 6.463 13 C -0.083 4.083 14 C -0.103 4.103 15 C -0.180 4.180 16 C -0.026 4.026 17 N -0.048 5.048 18 N -0.155 5.155 19 C -0.106 4.106 20 C -0.294 4.294 21 C 0.008 3.992 22 H 0.076 0.924 23 H 0.055 0.945 24 H 0.088 0.912 25 H 0.081 0.919 26 H 0.168 0.832 27 H 0.170 0.830 28 H 0.179 0.821 29 H 0.207 0.793 30 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -5.106 -9.543 2.669 11.147 hybrid contribution 0.473 1.558 0.010 1.628 sum -4.633 -7.985 2.679 9.612 Atomic orbital electron populations 1.21734 0.81408 1.00384 1.00777 1.43472 1.05473 1.04565 1.60476 1.19679 1.00887 0.83481 1.39481 0.87942 1.25386 0.96756 1.00381 0.94483 1.70005 1.23190 1.30319 1.26676 0.85951 0.78492 0.80954 0.79604 1.20165 1.20616 1.19096 1.17405 0.87372 0.82337 0.85988 1.90661 1.13106 1.86344 1.56168 1.20961 0.95793 0.94759 0.96740 1.21916 0.93097 0.97286 0.98046 1.20623 1.02741 0.93416 1.01220 1.21273 0.87543 1.01269 0.92565 1.46112 1.19035 1.11511 1.28158 1.77710 1.12530 1.15875 1.09348 1.23782 0.95125 0.93299 0.98430 1.21348 1.03265 1.00058 1.04711 1.20393 0.94080 0.86781 0.97923 0.92350 0.94535 0.91199 0.91881 0.83206 0.82952 0.82141 0.79340 0.82463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.15 7.32 59.85 0.44 2.58 16 2 N -0.42 -10.70 3.00 -123.54 -0.37 -11.07 16 3 C -0.31 -8.37 9.17 -15.02 -0.14 -8.51 16 4 H 0.10 2.92 7.52 -52.49 -0.39 2.52 16 5 C 0.04 0.91 4.84 -17.45 -0.08 0.82 16 6 N -0.86 -22.11 11.34 55.50 0.63 -21.48 16 7 Si 0.92 19.88 29.60 -169.99 -5.03 14.85 16 8 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 9 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 10 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 11 C 0.48 12.06 7.21 -12.67 -0.09 11.96 16 12 O -0.58 -16.45 16.57 5.20 0.09 -16.36 16 13 C -0.08 -1.59 5.20 -102.69 -0.53 -2.12 16 14 C -0.08 -1.32 7.79 -38.72 -0.30 -1.62 16 15 C -0.16 -2.02 9.90 -40.14 -0.40 -2.42 16 16 C 0.10 1.35 11.12 -16.70 -0.19 1.16 16 17 N -0.28 -4.91 3.89 -9.40 -0.04 -4.95 16 18 N -0.33 -5.70 12.66 30.51 0.39 -5.31 16 19 C 0.07 1.12 11.95 -17.52 -0.21 0.91 16 20 C -0.26 -5.01 10.60 -39.36 -0.42 -5.42 16 21 C 0.13 2.54 6.83 -82.19 -0.56 1.98 16 22 H 0.06 1.22 6.69 -51.93 -0.35 0.88 16 23 H 0.04 0.67 6.08 -51.93 -0.32 0.36 16 24 H 0.07 1.55 7.03 -51.93 -0.37 1.19 16 25 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 26 H 0.15 2.40 5.97 -52.49 -0.31 2.09 16 27 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 28 H 0.16 1.60 8.06 -52.49 -0.42 1.17 16 29 H 0.19 2.13 8.06 -52.48 -0.42 1.71 16 30 H 0.16 3.04 8.06 -52.49 -0.42 2.62 16 LS Contribution 264.14 15.07 3.98 3.98 Total: -1.00 -32.37 264.14 -5.40 -37.77 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -2.56 Total: 3.23 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -2.48 Total: -0.67 kcal Atomic # 7 Polarization: -43.42 SS G_CDS: 0.61 Total: -42.81 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: 0.09 Total: -16.36 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.03 Total: 14.85 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -32.37 -5.40 -37.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723503494.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.317 kcal (2) G-P(sol) polarization free energy of solvation -32.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds