Wall clock time and date at job start Mon Mar 30 2020 03:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36838 * 119.99914 * 2 1 4 4 H 1.07998 * 120.00147 * 156.21411 * 3 2 1 5 5 C 1.39046 * 119.99930 * 335.93824 * 3 2 1 6 6 N 1.31372 * 120.00093 * 339.10851 * 5 3 2 7 7 Si 1.86799 * 120.00017 * 159.10769 * 5 3 2 8 8 H 1.48498 * 109.46927 * 94.96424 * 7 5 3 9 9 H 1.48497 * 109.47069 * 214.96607 * 7 5 3 10 10 H 1.48501 * 109.47013 * 334.96424 * 7 5 3 11 11 C 1.34774 * 120.00011 * 180.02562 * 2 1 3 12 12 O 1.21689 * 119.99580 * 176.38411 * 11 2 1 13 13 C 1.47099 * 120.00065 * 356.38290 * 11 2 1 14 14 C 1.39060 * 120.91159 * 44.42707 * 13 11 2 15 15 C 1.39732 * 119.17980 * 179.75107 * 14 13 11 16 16 C 1.35108 * 121.27557 * 0.51812 * 15 14 13 17 17 N 1.36259 * 121.78473 * 359.75561 * 16 15 14 18 18 N 1.40079 * 132.47786 * 179.97438 * 17 16 15 19 19 C 1.31340 * 108.88361 * 180.02562 * 18 17 16 20 20 C 1.38891 * 108.94129 * 359.97438 * 19 18 17 21 21 C 1.37168 * 120.19517 * 359.97438 * 17 16 15 22 22 H 1.09003 * 109.47253 * 93.86242 * 1 2 3 23 23 H 1.09002 * 109.47211 * 213.86484 * 1 2 3 24 24 H 1.09005 * 109.47453 * 333.86311 * 1 2 3 25 25 H 0.96994 * 120.00618 * 179.97438 * 6 5 3 26 26 H 1.07997 * 120.41188 * 359.97438 * 14 13 11 27 27 H 1.07996 * 119.36251 * 180.27472 * 15 14 13 28 28 H 1.08002 * 119.10851 * 179.74419 * 16 15 14 29 29 H 1.08003 * 125.52825 * 180.02562 * 19 18 17 30 30 H 1.08002 * 126.22392 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1492 1.1851 0.0000 4 1 3.1603 1.2248 0.3772 5 6 1.5445 2.3369 -0.4910 6 7 0.5216 2.2438 -1.3100 7 14 2.1867 4.0168 0.0141 8 1 3.1441 4.5087 -1.0089 9 1 1.0513 4.9672 0.1272 10 1 2.8751 3.9097 1.3256 11 6 2.1389 -1.1672 -0.0005 12 8 3.3539 -1.1681 -0.0670 13 6 1.4056 -2.4399 0.0793 14 6 0.2667 -2.6575 -0.6884 15 6 -0.3988 -3.8820 -0.5880 16 6 0.0372 -4.8510 0.2465 17 7 1.1442 -4.6845 1.0234 18 7 1.7845 -5.5186 1.9488 19 6 2.8272 -4.8881 2.4391 20 6 2.9075 -3.6294 1.8574 21 6 1.8516 -3.5104 0.9738 22 1 -0.3634 -0.0692 -1.0253 23 1 -0.3634 -0.8533 0.5727 24 1 -0.3634 0.9226 0.4527 25 1 0.0996 3.0472 -1.6523 26 1 -0.0969 -1.8909 -1.3567 27 1 -1.2810 -4.0559 -1.1862 28 1 -0.5065 -5.7827 0.2994 29 1 3.5117 -5.2844 3.1745 30 1 3.6585 -2.8799 2.0588 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723503494.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:47 Heat of formation + Delta-G solvation = 67.802921 kcal Electronic energy + Delta-G solvation = -17226.479571 eV Core-core repulsion = 14409.792331 eV Total energy + Delta-G solvation = -2816.687240 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.85960 -40.39252 -37.90381 -36.71424 -34.19394 -33.25328 -31.61063 -29.70072 -28.13339 -26.98641 -24.98221 -23.58641 -22.77328 -21.00885 -19.02238 -18.34741 -18.21051 -17.38594 -16.80967 -16.54475 -16.28844 -16.00887 -15.64822 -14.92404 -14.71368 -14.06458 -13.93091 -13.50085 -13.33127 -13.11858 -12.85557 -12.81645 -12.55224 -12.39195 -12.12510 -11.89102 -11.32824 -11.05009 -10.49355 -10.33229 -9.74644 -8.59153 -8.45884 -6.02518 -0.44733 0.11829 1.24548 1.36571 1.42045 1.55144 1.72056 1.88658 2.24863 2.45392 2.89669 3.04850 3.34003 3.52051 3.84430 3.92664 4.07323 4.40374 4.51281 4.57521 4.66288 4.85108 4.89239 5.03876 5.16646 5.22111 5.36108 5.41152 5.57553 5.87564 6.03719 6.41057 6.52901 7.08399 7.32952 7.93919 8.58991 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.037896 B = 0.006673 C = 0.005908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.682847 B = 4195.094981 C = 4737.812166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.439 5.439 3 C -0.353 4.353 4 H 0.071 0.929 5 C 0.008 3.992 6 N -0.879 5.879 7 Si 0.987 3.013 8 H -0.275 1.275 9 H -0.262 1.262 10 H -0.271 1.271 11 C 0.475 3.525 12 O -0.630 6.630 13 C -0.134 4.134 14 C -0.045 4.045 15 C -0.152 4.152 16 C 0.113 3.887 17 N -0.287 5.287 18 N -0.338 5.338 19 C 0.090 3.910 20 C -0.304 4.304 21 C 0.111 3.889 22 H 0.061 0.939 23 H 0.063 0.937 24 H 0.056 0.944 25 H 0.279 0.721 26 H 0.155 0.845 27 H 0.210 0.790 28 H 0.210 0.790 29 H 0.231 0.769 30 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.500 -10.156 2.417 12.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.155 5.155 3 C -0.481 4.481 4 H 0.089 0.911 5 C -0.196 4.196 6 N -0.516 5.516 7 Si 0.810 3.190 8 H -0.200 1.200 9 H -0.186 1.186 10 H -0.196 1.196 11 C 0.266 3.734 12 O -0.519 6.519 13 C -0.139 4.139 14 C -0.069 4.069 15 C -0.173 4.173 16 C -0.012 4.012 17 N -0.054 5.054 18 N -0.161 5.161 19 C -0.087 4.087 20 C -0.333 4.333 21 C -0.009 4.009 22 H 0.080 0.920 23 H 0.082 0.918 24 H 0.075 0.925 25 H 0.089 0.911 26 H 0.173 0.827 27 H 0.227 0.773 28 H 0.226 0.774 29 H 0.247 0.753 30 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.717 -11.169 2.406 13.787 hybrid contribution 1.182 1.899 0.030 2.237 sum -6.535 -9.270 2.436 11.600 Atomic orbital electron populations 1.21707 0.79264 1.00824 1.01212 1.43677 1.06872 1.04201 1.60741 1.19586 1.00779 0.85473 1.42235 0.91093 1.26097 0.96859 1.02969 0.93693 1.70025 1.23505 1.31609 1.26413 0.85032 0.78390 0.76802 0.78783 1.20033 1.18574 1.19596 1.18134 0.87126 0.83891 0.84296 1.90589 1.15639 1.87586 1.58096 1.20514 0.98727 0.93502 1.01197 1.22226 0.90696 0.98828 0.95140 1.21185 1.03736 0.91074 1.01325 1.22334 0.85616 1.03042 0.90168 1.46453 1.19773 1.10545 1.28648 1.77666 1.12911 1.15935 1.09625 1.24335 0.94892 0.91595 0.97890 1.21385 1.03799 1.01410 1.06681 1.20404 0.94810 0.87616 0.98077 0.92015 0.91820 0.92538 0.91077 0.82732 0.77329 0.77378 0.75278 0.84672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.83 7.32 127.77 0.94 5.76 16 2 N -0.44 -23.16 3.00 -662.99 -1.99 -25.15 16 3 C -0.35 -20.27 9.17 84.11 0.77 -19.50 16 4 H 0.07 4.39 7.52 -2.91 -0.02 4.37 16 5 C 0.01 0.43 4.84 84.96 0.41 0.84 16 6 N -0.88 -45.04 11.34 21.68 0.25 -44.80 16 7 Si 0.99 41.40 29.60 68.60 2.03 43.43 16 8 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 9 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 10 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 11 C 0.48 25.18 7.21 86.57 0.62 25.81 16 12 O -0.63 -38.72 16.57 -4.31 -0.07 -38.79 16 13 C -0.13 -5.60 5.20 -18.61 -0.10 -5.70 16 14 C -0.05 -1.40 7.79 22.83 0.18 -1.22 16 15 C -0.15 -3.12 9.90 21.91 0.22 -2.90 16 16 C 0.11 2.53 11.12 83.28 0.93 3.46 16 17 N -0.29 -9.34 3.89 -183.64 -0.71 -10.06 16 18 N -0.34 -10.85 12.66 -57.39 -0.73 -11.58 16 19 C 0.09 2.75 11.95 84.92 1.01 3.77 16 20 C -0.30 -11.89 10.60 22.42 0.24 -11.65 16 21 C 0.11 4.43 6.83 40.44 0.28 4.71 16 22 H 0.06 2.56 6.69 -2.39 -0.02 2.54 16 23 H 0.06 2.31 6.08 -2.39 -0.01 2.30 16 24 H 0.06 2.53 7.03 -2.38 -0.02 2.52 16 25 H 0.28 13.19 8.31 -92.71 -0.77 12.42 16 26 H 0.16 4.60 5.97 -2.91 -0.02 4.58 16 27 H 0.21 2.00 8.06 -2.91 -0.02 1.97 16 28 H 0.21 2.70 8.06 -2.91 -0.02 2.68 16 29 H 0.23 4.68 8.06 -2.91 -0.02 4.66 16 30 H 0.14 5.75 8.06 -2.91 -0.02 5.72 16 Total: -1.00 -76.15 264.14 5.44 -70.70 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: 1.17 Total: 12.86 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: 5.49 Total: 3.38 kcal Atomic # 7 Polarization: -88.40 SS G_CDS: -3.18 Total: -91.58 kcal Atomic # 8 Polarization: -38.72 SS G_CDS: -0.07 Total: -38.79 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal Total: -76.15 5.44 -70.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723503494.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.507 kcal (2) G-P(sol) polarization free energy of solvation -76.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds