Wall clock time and date at job start Mon Mar 30 2020 04:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00107 * 2 1 4 4 H 1.48500 * 109.47325 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.47278 * 299.99852 * 3 2 1 6 6 H 1.48497 * 109.47387 * 59.99813 * 3 2 1 7 7 C 1.37880 * 119.99845 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99802 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99873 * 0.02562 * 7 2 1 10 10 H 1.09000 * 110.82119 * 56.66252 * 9 7 2 11 11 C 1.54893 * 110.75379 * 293.32564 * 9 7 2 12 12 C 1.54266 * 104.19500 * 203.74545 * 11 9 7 13 13 C 1.53872 * 106.60044 * 23.61099 * 12 11 9 14 14 H 1.09003 * 110.03622 * 240.71485 * 13 12 11 15 15 N 1.46500 * 110.07569 * 119.30387 * 13 12 11 16 16 C 1.34777 * 119.99672 * 87.80817 * 15 13 12 17 17 O 1.21515 * 120.00434 * 0.02562 * 16 15 13 18 18 O 1.34638 * 120.00084 * 179.97438 * 16 15 13 19 19 C 1.45205 * 117.00201 * 180.02562 * 18 16 15 20 20 C 1.52997 * 109.46928 * 180.02562 * 19 18 16 21 21 F 1.39893 * 109.47405 * 65.00318 * 20 19 18 22 22 C 1.54266 * 106.59640 * 359.97438 * 13 12 11 23 23 H 0.97002 * 119.99577 * 0.02562 * 1 2 3 24 24 H 1.09002 * 110.48578 * 85.07022 * 11 9 7 25 25 H 1.09001 * 110.49013 * 322.42463 * 11 9 7 26 26 H 1.09002 * 110.02957 * 264.32709 * 12 11 9 27 27 H 1.09000 * 110.07144 * 142.92082 * 12 11 9 28 28 H 0.96995 * 120.00282 * 267.81675 * 15 13 12 29 29 H 1.09004 * 109.46967 * 300.00594 * 19 18 16 30 30 H 1.08999 * 109.46621 * 60.00380 * 19 18 16 31 31 H 1.09004 * 109.46976 * 185.00481 * 20 19 18 32 32 H 1.09002 * 109.46897 * 304.99764 * 20 19 18 33 33 H 1.09001 * 110.48620 * 95.07012 * 22 13 12 34 34 H 1.09004 * 110.48798 * 217.70845 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3965 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.5727 -2.5549 -0.8509 11 6 0.4794 -2.6874 1.3303 12 6 0.2961 -4.2146 1.4484 13 6 1.4097 -4.8576 0.6034 14 1 0.9733 -5.4596 -0.1937 15 7 2.2656 -5.6919 1.4505 16 6 1.9460 -6.9831 1.6671 17 8 0.9482 -7.4555 1.1594 18 8 2.7329 -7.7501 2.4452 19 6 2.3276 -9.1315 2.6341 20 6 3.3362 -9.8394 3.5410 21 9 3.2999 -9.2654 4.8162 22 6 2.2304 -3.6987 0.0007 23 1 -0.4849 0.8401 -0.0004 24 1 -0.4892 -2.1895 1.2831 25 1 1.0643 -2.3074 2.1680 26 1 -0.6808 -4.5044 1.0615 27 1 0.3917 -4.5234 2.4894 28 1 3.0623 -5.3149 1.8556 29 1 1.3408 -9.1608 3.0963 30 1 2.2914 -9.6348 1.6680 31 1 3.0820 -10.8971 3.6111 32 1 4.3374 -9.7334 3.1231 33 1 3.0983 -3.4817 0.6234 34 1 2.5401 -3.9391 -1.0164 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000859174948.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:34 Heat of formation + Delta-G solvation = -172.167216 kcal Electronic energy + Delta-G solvation = -17652.480131 eV Core-core repulsion = 14498.158124 eV Total energy + Delta-G solvation = -3154.322008 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 245.121 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.59772 -41.58214 -39.33801 -37.43392 -35.42088 -33.89687 -31.73458 -29.97371 -28.75193 -25.90965 -24.25876 -22.69099 -21.45429 -20.92754 -19.71290 -18.58022 -17.96556 -17.89170 -16.80907 -16.65944 -16.49180 -16.29415 -15.84146 -15.79989 -14.54653 -14.33125 -14.14480 -14.00812 -13.63751 -13.03397 -12.82513 -12.67318 -12.40948 -12.36379 -12.15277 -12.01385 -11.78581 -11.70577 -11.57244 -11.40705 -11.08209 -10.81303 -10.45341 -10.17069 -8.09414 -6.18755 1.10128 1.43344 1.46006 1.56480 1.70505 2.46443 3.13036 3.22426 3.57959 3.83146 3.87303 3.99227 4.06106 4.16941 4.30164 4.41257 4.67136 4.71579 4.85034 4.88555 4.98049 5.03806 5.13592 5.16698 5.31806 5.40259 5.58998 5.67376 5.91739 6.00012 6.38604 6.41391 6.92438 7.27318 7.49114 9.00004 Molecular weight = 245.12amu Principal moments of inertia in cm(-1) A = 0.048404 B = 0.004126 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.331695 B = 6785.053807 C = 6994.300266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.011 3.989 3 Si 0.953 3.047 4 H -0.263 1.263 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.527 4.527 8 H 0.060 0.940 9 C 0.040 3.960 10 H 0.007 0.993 11 C -0.093 4.093 12 C -0.127 4.127 13 C 0.167 3.833 14 H 0.081 0.919 15 N -0.687 5.687 16 C 0.646 3.354 17 O -0.606 6.606 18 O -0.372 6.372 19 C 0.041 3.959 20 C 0.068 3.932 21 F -0.234 7.234 22 C -0.107 4.107 23 H 0.259 0.741 24 H 0.037 0.963 25 H 0.040 0.960 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.416 0.584 29 H 0.073 0.927 30 H 0.103 0.897 31 H 0.139 0.861 32 H 0.103 0.897 33 H 0.075 0.925 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.407 -17.425 5.279 19.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.188 4.188 3 Si 0.779 3.221 4 H -0.187 1.187 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.565 4.565 8 H 0.078 0.922 9 C 0.021 3.979 10 H 0.025 0.975 11 C -0.132 4.132 12 C -0.166 4.166 13 C 0.064 3.936 14 H 0.099 0.901 15 N -0.346 5.346 16 C 0.399 3.601 17 O -0.498 6.498 18 O -0.286 6.286 19 C -0.034 4.034 20 C 0.013 3.987 21 F -0.215 7.215 22 C -0.145 4.145 23 H 0.068 0.932 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.254 0.746 29 H 0.092 0.908 30 H 0.121 0.879 31 H 0.157 0.843 32 H 0.121 0.879 33 H 0.094 0.906 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.799 -17.610 5.092 19.552 hybrid contribution 0.110 1.308 0.138 1.320 sum 6.910 -16.301 5.230 18.462 Atomic orbital electron populations 1.70101 1.07339 1.27088 1.51548 1.25771 0.95591 1.02485 0.94950 0.85578 0.79315 0.79871 0.77311 1.18729 1.20991 1.21012 1.21520 0.93200 0.91577 1.50193 0.92161 1.19546 0.92984 0.92151 0.93205 0.97517 1.22136 0.99609 0.92394 0.99049 1.22567 0.98120 0.96481 0.99441 1.21613 0.90354 0.90373 0.91274 0.90055 1.44976 1.30177 1.06929 1.52513 1.18254 0.81102 0.82806 0.77911 1.90961 1.29195 1.74197 1.55460 1.86272 1.52057 1.25501 1.64727 1.23981 0.99988 0.76969 1.02441 1.22420 1.01415 0.98093 0.76736 1.92767 1.97929 1.87505 1.43348 1.22598 0.98518 0.93232 1.00195 0.93202 0.94425 0.94079 0.92371 0.92001 0.74647 0.90844 0.87915 0.84320 0.87865 0.90598 0.91359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.21 12.41 21.45 0.27 -52.94 16 2 C 0.01 0.58 5.36 84.65 0.45 1.03 16 3 Si 0.95 42.85 29.54 68.60 2.03 44.88 16 4 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 6 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 7 C -0.53 -27.91 8.49 25.60 0.22 -27.70 16 8 H 0.06 3.08 7.77 -2.91 -0.02 3.06 16 9 C 0.04 1.93 2.73 -10.26 -0.03 1.90 16 10 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 11 C -0.09 -4.29 5.75 31.67 0.18 -4.11 16 12 C -0.13 -4.87 6.59 31.32 0.21 -4.66 16 13 C 0.17 5.82 3.24 45.71 0.15 5.96 16 14 H 0.08 2.94 7.56 -2.39 -0.02 2.92 16 15 N -0.69 -20.49 4.99 -566.66 -2.83 -23.32 16 16 C 0.65 20.14 8.75 129.79 1.14 21.28 16 17 O -0.61 -22.38 15.79 19.79 0.31 -22.07 16 18 O -0.37 -9.54 10.27 -55.47 -0.57 -10.11 16 19 C 0.04 0.75 5.93 71.98 0.43 1.17 16 20 C 0.07 0.80 7.93 71.98 0.57 1.37 16 21 F -0.23 -4.79 17.35 44.97 0.78 -4.01 16 22 C -0.11 -4.01 5.94 31.66 0.19 -3.83 16 23 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 24 H 0.04 1.92 7.63 -2.39 -0.02 1.90 16 25 H 0.04 1.91 8.04 -2.39 -0.02 1.89 16 26 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 27 H 0.06 2.23 7.92 -2.39 -0.02 2.22 16 28 H 0.42 10.54 8.47 -92.71 -0.79 9.76 16 29 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 30 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.14 0.56 8.14 -2.38 -0.02 0.54 16 32 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.08 2.66 7.63 -2.39 -0.02 2.64 16 34 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 Total: -1.00 -66.16 292.71 3.80 -62.35 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: 0.31 Total: 12.77 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: 3.50 Total: -7.57 kcal Atomic # 7 Polarization: -73.69 SS G_CDS: -2.56 Total: -76.26 kcal Atomic # 8 Polarization: -31.92 SS G_CDS: -0.26 Total: -32.17 kcal Atomic # 9 Polarization: -4.79 SS G_CDS: 0.78 Total: -4.01 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -66.16 3.80 -62.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859174948.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.813 kcal (2) G-P(sol) polarization free energy of solvation -66.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds