Wall clock time and date at job start Mon Mar 30 2020 04:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47067 * 2 1 4 4 C 1.50700 * 109.47281 * 239.99733 * 2 1 3 5 5 H 1.07997 * 119.99794 * 240.00459 * 4 2 1 6 6 C 1.37874 * 120.00133 * 59.99972 * 4 2 1 7 7 N 1.31518 * 119.99851 * 0.02562 * 6 4 2 8 8 Si 1.86792 * 120.00140 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.47312 * 60.00031 * 8 6 4 10 10 H 1.48505 * 109.47409 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47477 * 300.00343 * 8 6 4 12 12 S 1.81404 * 109.46814 * 119.99726 * 2 1 3 13 13 C 1.81394 * 102.99968 * 292.41696 * 12 2 1 14 14 H 1.09004 * 110.39555 * 42.67295 * 13 12 2 15 15 N 1.48026 * 110.44331 * 165.09725 * 13 12 2 16 16 N 1.46189 * 106.77329 * 143.01086 * 15 13 12 17 17 C 1.47875 * 107.15921 * 358.94627 * 16 15 13 18 18 H 1.08999 * 113.04029 * 101.20867 * 17 16 15 19 19 N 1.48391 * 108.71349 * 228.44589 * 17 16 15 20 20 C 1.47981 * 104.53487 * 74.42501 * 19 17 16 21 21 N 1.47568 * 106.61903 * 22.91695 * 20 19 17 22 22 N 1.46130 * 107.30203 * 359.26864 * 21 20 19 23 23 H 1.08996 * 109.47338 * 293.99955 * 1 2 3 24 24 H 1.09006 * 109.46910 * 53.99292 * 1 2 3 25 25 H 1.09001 * 109.47288 * 173.99478 * 1 2 3 26 26 H 0.97005 * 120.00101 * 180.02562 * 7 6 4 27 27 H 1.00900 * 111.00147 * 264.12178 * 15 13 12 28 28 H 1.00900 * 110.99842 * 120.29065 * 16 15 13 29 29 H 1.00899 * 111.00098 * 314.67993 * 19 17 16 30 30 H 1.09003 * 110.02324 * 263.63144 * 20 19 17 31 31 H 1.09000 * 110.06845 * 142.22966 * 20 19 17 32 32 H 1.00897 * 110.99994 * 237.83241 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3214 -1.1205 -4.0078 9 1 1.8259 -2.5205 -4.0076 10 1 1.8270 -0.4202 -5.2204 11 1 3.8064 -1.1212 -4.0080 12 16 2.1346 -0.8551 1.4812 13 6 1.6351 0.2553 2.8258 14 1 0.6222 0.6220 2.6592 15 7 1.7255 -0.4388 4.1301 16 7 2.1944 0.5479 5.1015 17 6 2.4054 1.8150 4.3691 18 1 1.5926 2.5280 4.5071 19 7 3.7400 2.3557 4.7277 20 6 4.6978 1.4912 4.0029 21 7 3.9583 0.8967 2.8728 22 7 2.5848 1.3906 2.9443 23 1 -0.3634 0.4180 0.9388 24 1 -0.3633 0.6042 -0.8314 25 1 -0.3634 -1.0220 -0.1075 26 1 0.7089 1.1612 -3.4845 27 1 0.8301 -0.8164 4.4017 28 1 1.5248 0.6682 5.8467 29 1 3.8932 2.3093 5.7239 30 1 5.0651 0.7056 4.6633 31 1 5.5319 2.0865 3.6314 32 1 3.9827 -0.1111 2.9148 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000953067786.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:55 Heat of formation + Delta-G solvation = 115.127694 kcal Electronic energy + Delta-G solvation = -16335.081783 eV Core-core repulsion = 13688.183401 eV Total energy + Delta-G solvation = -2646.898382 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.101 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.30866 -35.44796 -34.00927 -32.82803 -30.37407 -29.73965 -28.85340 -25.34503 -23.41175 -22.52035 -21.75751 -21.22030 -18.16766 -17.22634 -16.37821 -15.82705 -15.38014 -14.98224 -14.74990 -14.22035 -13.87488 -13.76386 -13.15294 -12.87138 -12.66487 -12.53527 -11.90159 -11.31672 -11.04085 -10.93726 -10.61633 -10.48902 -10.22282 -9.80385 -9.36187 -9.27491 -8.86178 -8.56297 -8.44282 -8.27238 -6.83106 -6.13329 -4.21081 2.05397 3.23735 3.30407 3.33779 3.37531 3.47297 3.71475 4.14189 4.19926 4.32880 4.38336 4.81496 5.01818 5.19654 5.24857 5.37627 5.62785 5.99258 6.11603 6.36539 6.56186 6.76762 6.82641 6.84234 7.09153 7.24832 7.43737 7.60576 7.64638 7.83456 8.08285 8.77423 9.41982 10.93375 Molecular weight = 245.10amu Principal moments of inertia in cm(-1) A = 0.040566 B = 0.006458 C = 0.006181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.059784 B = 4334.835266 C = 4528.567252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.109 3.891 3 H 0.055 0.945 4 C -0.505 4.505 5 H 0.066 0.934 6 C 0.071 3.929 7 N -0.888 5.888 8 Si 0.906 3.094 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.274 1.274 12 S -0.204 6.204 13 C 0.167 3.833 14 H 0.091 0.909 15 N -0.483 5.483 16 N -0.541 5.541 17 C 0.282 3.718 18 H 0.123 0.877 19 N -0.639 5.639 20 C 0.193 3.807 21 N -0.481 5.481 22 N -0.263 5.263 23 H 0.004 0.996 24 H 0.091 0.909 25 H 0.041 0.959 26 H 0.265 0.735 27 H 0.338 0.662 28 H 0.329 0.671 29 H 0.349 0.651 30 H 0.037 0.963 31 H 0.104 0.896 32 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.457 0.777 13.972 14.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.019 4.019 3 H 0.073 0.927 4 C -0.545 4.545 5 H 0.084 0.916 6 C -0.133 4.133 7 N -0.525 5.525 8 Si 0.733 3.267 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.199 1.199 12 S 0.023 5.977 13 C -0.143 4.143 14 H 0.109 0.891 15 N -0.207 5.207 16 N -0.267 5.267 17 C -0.009 4.009 18 H 0.140 0.860 19 N -0.274 5.274 20 C -0.028 4.028 21 N -0.207 5.207 22 N -0.082 5.082 23 H 0.022 0.978 24 H 0.110 0.890 25 H 0.060 0.940 26 H 0.075 0.925 27 H 0.153 0.847 28 H 0.144 0.856 29 H 0.167 0.833 30 H 0.055 0.945 31 H 0.121 0.879 32 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 2.418 0.883 12.380 12.645 hybrid contribution -2.543 -0.299 1.171 2.816 sum -0.125 0.584 13.551 13.564 Atomic orbital electron populations 1.22055 0.97051 1.01097 0.99151 1.20936 0.94679 0.97933 0.88328 0.92662 1.20547 1.32424 1.13014 0.88517 0.91637 1.24871 0.94753 0.94940 0.98755 1.69877 1.36077 1.22517 1.24069 0.86416 0.79427 0.79529 0.81283 1.20060 1.21118 1.19885 1.86628 1.78750 1.31753 1.00545 1.26707 0.99806 0.92554 0.95258 0.89087 1.67378 1.33609 1.22080 0.97595 1.67658 1.44081 1.07471 1.07441 1.26716 0.94771 0.90517 0.88925 0.86022 1.63896 1.00098 1.49930 1.13443 1.23801 0.95446 0.93841 0.89710 1.66926 0.99286 1.14967 1.39537 1.73226 0.97997 1.20723 1.16218 0.97753 0.89038 0.93981 0.92499 0.84658 0.85584 0.83329 0.94522 0.87867 0.82766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 8.85 37.16 0.33 -2.81 16 2 C 0.11 2.75 2.75 -27.88 -0.08 2.67 16 3 H 0.06 1.55 8.14 -51.93 -0.42 1.13 16 4 C -0.51 -13.85 8.58 -34.44 -0.30 -14.14 16 5 H 0.07 1.81 7.71 -52.49 -0.40 1.41 16 6 C 0.07 1.93 5.30 -17.82 -0.09 1.83 16 7 N -0.89 -24.80 11.39 55.43 0.63 -24.17 16 8 Si 0.91 21.14 29.54 -169.99 -5.02 16.12 16 9 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 12 S -0.20 -4.34 19.18 -107.50 -2.06 -6.40 16 13 C 0.17 2.92 3.77 -59.88 -0.23 2.70 16 14 H 0.09 1.60 6.68 -51.93 -0.35 1.25 16 15 N -0.48 -6.91 7.78 -9.02 -0.07 -6.98 16 16 N -0.54 -6.57 7.71 -7.43 -0.06 -6.63 16 17 C 0.28 3.89 5.41 -258.92 -1.40 2.48 16 18 H 0.12 1.51 8.14 -51.93 -0.42 1.09 16 19 N -0.64 -8.30 7.57 -112.08 -0.85 -9.15 16 20 C 0.19 2.78 8.15 -60.95 -0.50 2.28 16 21 N -0.48 -8.68 7.36 -12.15 -0.09 -8.77 16 22 N -0.26 -4.72 6.83 -107.87 -0.74 -5.45 16 23 H 0.00 0.07 6.61 -51.93 -0.34 -0.27 16 24 H 0.09 2.35 6.26 -51.93 -0.32 2.02 16 25 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 27 H 0.34 4.05 9.04 -173.99 -1.57 2.47 16 28 H 0.33 3.01 9.04 -173.99 -1.57 1.43 16 29 H 0.35 3.59 8.85 -39.29 -0.35 3.24 16 30 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 32 H 0.35 6.58 6.70 -174.04 -1.17 5.42 16 LS Contribution 271.39 15.07 4.09 4.09 Total: -1.00 -29.11 271.39 -13.75 -42.86 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -7.33 Total: 9.47 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -2.26 Total: -4.99 kcal Atomic # 7 Polarization: -59.97 SS G_CDS: -1.17 Total: -61.14 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: -4.34 SS G_CDS: -2.06 Total: -6.40 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.11 -13.75 -42.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000953067786.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.992 kcal (2) G-P(sol) polarization free energy of solvation -29.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds