Wall clock time and date at job start Mon Mar 30 2020 04:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47067 * 2 1 4 4 C 1.50700 * 109.47281 * 239.99733 * 2 1 3 5 5 H 1.07997 * 119.99794 * 240.00459 * 4 2 1 6 6 C 1.37874 * 120.00133 * 59.99972 * 4 2 1 7 7 N 1.31518 * 119.99851 * 0.02562 * 6 4 2 8 8 Si 1.86792 * 120.00140 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.47312 * 60.00031 * 8 6 4 10 10 H 1.48505 * 109.47409 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47477 * 300.00343 * 8 6 4 12 12 S 1.81404 * 109.46814 * 119.99726 * 2 1 3 13 13 C 1.81394 * 102.99968 * 292.41696 * 12 2 1 14 14 H 1.09004 * 110.39555 * 42.67295 * 13 12 2 15 15 N 1.48026 * 110.44331 * 165.09725 * 13 12 2 16 16 N 1.46189 * 106.77329 * 143.01086 * 15 13 12 17 17 C 1.47875 * 107.15921 * 358.94627 * 16 15 13 18 18 H 1.08999 * 113.04029 * 101.20867 * 17 16 15 19 19 N 1.48391 * 108.71349 * 228.44589 * 17 16 15 20 20 C 1.47981 * 104.53487 * 74.42501 * 19 17 16 21 21 N 1.47568 * 106.61903 * 22.91695 * 20 19 17 22 22 N 1.46130 * 107.30203 * 359.26864 * 21 20 19 23 23 H 1.08996 * 109.47338 * 293.99955 * 1 2 3 24 24 H 1.09006 * 109.46910 * 53.99292 * 1 2 3 25 25 H 1.09001 * 109.47288 * 173.99478 * 1 2 3 26 26 H 0.97005 * 120.00101 * 180.02562 * 7 6 4 27 27 H 1.00900 * 111.00147 * 264.12178 * 15 13 12 28 28 H 1.00900 * 110.99842 * 120.29065 * 16 15 13 29 29 H 1.00899 * 111.00098 * 314.67993 * 19 17 16 30 30 H 1.09003 * 110.02324 * 263.63144 * 20 19 17 31 31 H 1.09000 * 110.06845 * 142.22966 * 20 19 17 32 32 H 1.00897 * 110.99994 * 237.83241 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3214 -1.1205 -4.0078 9 1 1.8259 -2.5205 -4.0076 10 1 1.8270 -0.4202 -5.2204 11 1 3.8064 -1.1212 -4.0080 12 16 2.1346 -0.8551 1.4812 13 6 1.6351 0.2553 2.8258 14 1 0.6222 0.6220 2.6592 15 7 1.7255 -0.4388 4.1301 16 7 2.1944 0.5479 5.1015 17 6 2.4054 1.8150 4.3691 18 1 1.5926 2.5280 4.5071 19 7 3.7400 2.3557 4.7277 20 6 4.6978 1.4912 4.0029 21 7 3.9583 0.8967 2.8728 22 7 2.5848 1.3906 2.9443 23 1 -0.3634 0.4180 0.9388 24 1 -0.3633 0.6042 -0.8314 25 1 -0.3634 -1.0220 -0.1075 26 1 0.7089 1.1612 -3.4845 27 1 0.8301 -0.8164 4.4017 28 1 1.5248 0.6682 5.8467 29 1 3.8932 2.3093 5.7239 30 1 5.0651 0.7056 4.6633 31 1 5.5319 2.0865 3.6314 32 1 3.9827 -0.1111 2.9148 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000953067786.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:55 Heat of formation + Delta-G solvation = 90.340267 kcal Electronic energy + Delta-G solvation = -16336.156646 eV Core-core repulsion = 13688.183401 eV Total energy + Delta-G solvation = -2647.973245 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.101 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.49790 -36.60025 -36.02959 -34.02503 -32.37837 -30.95548 -30.04407 -27.37776 -24.66897 -23.76350 -23.23224 -22.85739 -19.37659 -18.56855 -18.23280 -17.14659 -17.06123 -16.41739 -15.97315 -15.70948 -15.28705 -14.98944 -14.72845 -14.39798 -14.17724 -13.81447 -13.72468 -13.00190 -12.86160 -12.65551 -12.40581 -12.23181 -11.85839 -11.35331 -11.18045 -10.70878 -10.44584 -10.29237 -9.73556 -9.51242 -8.52036 -8.19500 -6.35204 0.54511 1.43945 1.46144 1.53940 1.84883 2.21379 2.30131 2.42378 2.95894 3.02733 3.10452 3.17170 3.67318 3.74437 4.15482 4.25512 4.52804 4.66848 4.81443 4.85939 4.89494 5.07279 5.28673 5.39250 5.63160 5.74694 5.77737 6.04207 6.06590 6.24135 6.37479 6.67179 7.31509 8.86272 Molecular weight = 245.10amu Principal moments of inertia in cm(-1) A = 0.040566 B = 0.006458 C = 0.006181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.059784 B = 4334.835266 C = 4528.567252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.108 3.892 3 H 0.014 0.986 4 C -0.528 4.528 5 H 0.057 0.943 6 C 0.026 3.974 7 N -0.912 5.912 8 Si 0.967 3.033 9 H -0.268 1.268 10 H -0.278 1.278 11 H -0.272 1.272 12 S -0.210 6.210 13 C 0.183 3.817 14 H 0.091 0.909 15 N -0.486 5.486 16 N -0.529 5.529 17 C 0.286 3.714 18 H 0.141 0.859 19 N -0.637 5.637 20 C 0.194 3.806 21 N -0.504 5.504 22 N -0.294 5.294 23 H 0.028 0.972 24 H 0.066 0.934 25 H 0.040 0.960 26 H 0.267 0.733 27 H 0.353 0.647 28 H 0.352 0.648 29 H 0.366 0.634 30 H 0.050 0.950 31 H 0.107 0.893 32 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.448 0.562 15.479 15.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.021 4.021 3 H 0.032 0.968 4 C -0.567 4.567 5 H 0.075 0.925 6 C -0.176 4.176 7 N -0.550 5.550 8 Si 0.791 3.209 9 H -0.193 1.193 10 H -0.203 1.203 11 H -0.198 1.198 12 S 0.017 5.983 13 C -0.128 4.128 14 H 0.108 0.892 15 N -0.211 5.211 16 N -0.257 5.257 17 C -0.005 4.005 18 H 0.158 0.842 19 N -0.274 5.274 20 C -0.027 4.027 21 N -0.230 5.230 22 N -0.114 5.114 23 H 0.047 0.953 24 H 0.085 0.915 25 H 0.059 0.941 26 H 0.076 0.924 27 H 0.171 0.829 28 H 0.169 0.831 29 H 0.186 0.814 30 H 0.068 0.932 31 H 0.124 0.876 32 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.397 0.667 13.927 14.148 hybrid contribution -2.508 -0.170 0.888 2.667 sum -0.111 0.497 14.815 14.824 Atomic orbital electron populations 1.21850 0.96006 1.00604 0.99448 1.20602 0.95443 0.95832 0.90191 0.96759 1.20832 1.32708 1.13073 0.90099 0.92521 1.25672 0.94785 0.95563 1.01544 1.69994 1.36749 1.23527 1.24733 0.85472 0.78767 0.78733 0.77895 1.19260 1.20327 1.19769 1.86380 1.79201 1.32220 1.00477 1.26386 0.99383 0.91736 0.95334 0.89155 1.67180 1.34771 1.22461 0.96720 1.67532 1.44864 1.06381 1.06921 1.26785 0.95622 0.91205 0.86895 0.84247 1.63876 0.99387 1.49422 1.14674 1.23820 0.95337 0.94323 0.89248 1.66855 0.99827 1.14399 1.41874 1.73078 0.97987 1.20875 1.19412 0.95281 0.91487 0.94068 0.92367 0.82887 0.83060 0.81391 0.93184 0.87551 0.83717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.67 8.85 71.98 0.64 -5.03 16 2 C 0.11 5.57 2.75 29.85 0.08 5.65 16 3 H 0.01 0.84 8.14 -2.39 -0.02 0.82 16 4 C -0.53 -29.56 8.58 25.60 0.22 -29.34 16 5 H 0.06 3.19 7.71 -2.91 -0.02 3.17 16 6 C 0.03 1.42 5.30 84.65 0.45 1.87 16 7 N -0.91 -51.90 11.39 21.45 0.24 -51.65 16 8 Si 0.97 43.56 29.54 68.60 2.03 45.58 16 9 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 10 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 11 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 12 S -0.21 -8.96 19.18 -56.49 -1.08 -10.05 16 13 C 0.18 6.18 3.77 169.61 0.64 6.82 16 14 H 0.09 3.05 6.68 -2.38 -0.02 3.03 16 15 N -0.49 -12.76 7.78 -182.45 -1.42 -14.17 16 16 N -0.53 -11.19 7.71 -177.41 -1.37 -12.56 16 17 C 0.29 7.14 5.41 239.16 1.29 8.43 16 18 H 0.14 3.01 8.14 -2.39 -0.02 2.99 16 19 N -0.64 -14.90 7.57 -508.50 -3.85 -18.75 16 20 C 0.19 5.22 8.15 169.98 1.38 6.61 16 21 N -0.50 -17.83 7.36 -192.35 -1.42 -19.25 16 22 N -0.29 -10.26 6.83 -495.19 -3.38 -13.64 16 23 H 0.03 1.18 6.61 -2.39 -0.02 1.17 16 24 H 0.07 3.51 6.26 -2.38 -0.01 3.50 16 25 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.27 14.38 8.31 -92.70 -0.77 13.61 16 27 H 0.35 7.46 9.04 -204.28 -1.85 5.62 16 28 H 0.35 5.04 9.04 -204.28 -1.85 3.19 16 29 H 0.37 6.34 8.85 -89.69 -0.79 5.55 16 30 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 32 H 0.34 12.67 6.70 -204.33 -1.37 11.30 16 Total: -1.00 -63.26 271.39 -10.21 -73.47 By element: Atomic # 1 Polarization: 30.68 SS G_CDS: -4.67 Total: 26.01 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: 4.71 Total: -4.99 kcal Atomic # 7 Polarization: -118.84 SS G_CDS: -11.19 Total: -130.03 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 16 Polarization: -8.96 SS G_CDS: -1.08 Total: -10.05 kcal Total: -63.26 -10.21 -73.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000953067786.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.813 kcal (2) G-P(sol) polarization free energy of solvation -63.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds