Wall clock time and date at job start Mon Mar 30 2020 04:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46924 * 2 1 4 4 C 1.50702 * 109.47041 * 180.02562 * 3 2 1 5 5 C 1.39015 * 126.76809 * 269.68801 * 4 3 2 6 6 C 1.41493 * 126.02212 * 359.97438 * 5 4 3 7 7 H 1.07997 * 120.00055 * 354.30564 * 6 5 4 8 8 C 1.39741 * 120.00071 * 174.30314 * 6 5 4 9 9 N 1.30982 * 119.99956 * 6.04642 * 8 6 5 10 10 Si 1.86802 * 120.00062 * 186.04158 * 8 6 5 11 11 H 1.48496 * 109.47226 * 94.97902 * 10 8 6 12 12 H 1.48496 * 109.47128 * 214.98200 * 10 8 6 13 13 H 1.48504 * 109.46838 * 334.98294 * 10 8 6 14 14 N 1.34845 * 107.95824 * 179.83135 * 5 4 3 15 15 N 1.28669 * 109.63175 * 0.43785 * 14 5 4 16 16 N 1.35010 * 126.77469 * 89.99985 * 4 3 2 17 17 C 1.46500 * 126.49280 * 0.02562 * 16 4 3 18 18 C 1.53004 * 109.47068 * 90.00598 * 17 16 4 19 19 F 1.39894 * 109.47164 * 174.99950 * 18 17 16 20 20 F 1.39903 * 109.46859 * 295.00079 * 18 17 16 21 21 H 1.09004 * 109.47096 * 60.00081 * 1 2 3 22 22 H 1.08995 * 109.46816 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47033 * 299.99864 * 1 2 3 24 24 H 1.08998 * 109.47033 * 240.00136 * 2 1 3 25 25 H 1.08995 * 109.47000 * 119.99748 * 2 1 3 26 26 H 1.08998 * 109.47155 * 60.00211 * 3 2 1 27 27 H 1.09004 * 109.47168 * 299.99875 * 3 2 1 28 28 H 0.97004 * 119.99855 * 180.02562 * 9 8 6 29 29 H 1.09005 * 109.47410 * 210.00314 * 17 16 4 30 30 H 1.08996 * 109.47222 * 330.00231 * 17 16 4 31 31 H 1.09000 * 109.47281 * 54.99778 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4426 -0.0006 5 6 4.3796 1.4485 1.1126 6 6 3.9615 1.4562 2.4643 7 1 2.9129 1.5506 2.7047 8 6 4.9055 1.3414 3.4883 9 7 6.1840 1.3460 3.2039 10 14 4.3439 1.1816 5.2627 11 1 4.2863 -0.2545 5.6363 12 1 5.3031 1.8860 6.1509 13 1 2.9957 1.7862 5.4116 14 7 5.6558 1.4424 0.6773 15 7 5.6738 1.4426 -0.6093 16 7 4.3548 1.4428 -1.0824 17 6 3.9324 1.4435 -2.4852 18 6 3.7860 2.8863 -2.9730 19 9 3.4942 2.8886 -4.3411 20 9 2.7484 3.5119 -2.2736 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6767 1.9564 0.8900 27 1 1.6766 1.9564 -0.8900 28 1 6.8393 1.2660 3.9147 29 1 4.6797 0.9296 -3.0900 30 1 2.9754 0.9301 -2.5767 31 1 4.7176 3.4249 -2.7993 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958544830.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:56 Heat of formation + Delta-G solvation = -32.968657 kcal Electronic energy + Delta-G solvation = -18085.717638 eV Core-core repulsion = 14846.264179 eV Total energy + Delta-G solvation = -3239.453459 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 245.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.86960 -46.86750 -40.11895 -34.74632 -34.07494 -32.84052 -29.93982 -28.63531 -26.47560 -24.58675 -23.44023 -21.27790 -20.43451 -19.24029 -17.56747 -17.37515 -16.91616 -16.25665 -15.02693 -14.95702 -14.39340 -13.90090 -13.78054 -13.51310 -13.24390 -13.20150 -12.73905 -12.50326 -12.27206 -11.79155 -11.38266 -11.22758 -11.09863 -11.04682 -10.80857 -10.62524 -10.33227 -10.16014 -9.80024 -9.35853 -8.97609 -8.59804 -7.48318 -6.42534 -4.21396 2.59614 3.11918 3.18667 3.21356 3.27283 3.96530 4.10440 4.23262 4.36504 4.56612 4.92273 5.33118 5.36801 5.43838 5.47997 5.55426 5.60329 5.95262 6.07709 6.21901 6.31178 6.43346 6.59905 6.80144 6.89548 6.99790 7.33586 7.46187 7.97245 8.38426 8.75001 9.03656 10.06728 10.54413 Molecular weight = 245.10amu Principal moments of inertia in cm(-1) A = 0.024670 B = 0.007736 C = 0.006421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.731662 B = 3618.562751 C = 4359.746237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C -0.018 4.018 4 C -0.103 4.103 5 C 0.155 3.845 6 C -0.448 4.448 7 H 0.083 0.917 8 C 0.073 3.927 9 N -0.776 5.776 10 Si 0.907 3.093 11 H -0.273 1.273 12 H -0.280 1.280 13 H -0.264 1.264 14 N -0.218 5.218 15 N -0.133 5.133 16 N -0.385 5.385 17 C 0.097 3.903 18 C 0.248 3.752 19 F -0.205 7.205 20 F -0.197 7.197 21 H 0.048 0.952 22 H 0.048 0.952 23 H 0.054 0.946 24 H 0.048 0.952 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.055 0.945 28 H 0.273 0.727 29 H 0.114 0.886 30 H 0.102 0.898 31 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.569 -0.254 -7.741 10.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C -0.058 4.058 4 C -0.233 4.233 5 C 0.026 3.974 6 C -0.484 4.484 7 H 0.101 0.899 8 C -0.146 4.146 9 N -0.402 5.402 10 Si 0.732 3.268 11 H -0.198 1.198 12 H -0.205 1.205 13 H -0.188 1.188 14 N -0.090 5.090 15 N -0.108 5.108 16 N -0.181 5.181 17 C -0.030 4.030 18 C 0.192 3.808 19 F -0.187 7.187 20 F -0.178 7.178 21 H 0.067 0.933 22 H 0.067 0.933 23 H 0.073 0.927 24 H 0.067 0.933 25 H 0.089 0.911 26 H 0.096 0.904 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.132 0.868 30 H 0.121 0.879 31 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -5.839 -0.252 -8.047 9.945 hybrid contribution -1.347 -0.025 0.861 1.598 sum -7.186 -0.277 -7.186 10.166 Atomic orbital electron populations 1.21780 0.96523 1.00914 1.01454 1.21528 0.94476 0.97563 1.02096 1.19696 0.88113 0.96030 1.01938 1.21431 0.93331 1.21671 0.86909 1.18964 0.85682 0.99301 0.93426 1.18552 0.94480 1.47909 0.87467 0.89899 1.25793 0.94570 0.93494 1.00762 1.70012 1.00924 1.35300 1.33956 0.86329 0.79395 0.78838 0.82239 1.19842 1.20494 1.18796 1.75078 1.20312 1.14282 0.99360 1.81541 0.96093 1.25747 1.07416 1.49194 1.07421 1.57973 1.03524 1.22229 1.03770 0.94487 0.82502 1.22456 0.89552 0.95916 0.72890 1.92965 1.94980 1.97431 1.33293 1.92998 1.61881 1.84228 1.78699 0.93320 0.93308 0.92654 0.93293 0.91110 0.90391 0.92654 0.91677 0.86752 0.87938 0.86805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.91 37.16 0.37 -1.56 16 2 C -0.12 -1.91 5.92 -26.73 -0.16 -2.07 16 3 C -0.02 -0.33 5.10 -27.88 -0.14 -0.47 16 4 C -0.10 -2.32 6.37 -80.91 -0.52 -2.84 16 5 C 0.16 4.18 6.72 -85.01 -0.57 3.61 16 6 C -0.45 -11.99 9.12 -37.78 -0.34 -12.33 16 7 H 0.08 2.06 7.26 -52.49 -0.38 1.68 16 8 C 0.07 1.92 5.49 -17.35 -0.10 1.82 16 9 N -0.78 -21.67 11.95 55.54 0.66 -21.01 16 10 Si 0.91 19.36 29.56 -169.99 -5.03 14.33 16 11 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 12 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 13 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 14 N -0.22 -6.18 10.58 32.05 0.34 -5.84 16 15 N -0.13 -3.32 13.74 60.35 0.83 -2.49 16 16 N -0.39 -8.11 3.62 -56.17 -0.20 -8.32 16 17 C 0.10 1.47 6.35 -4.04 -0.03 1.44 16 18 C 0.25 3.56 5.55 37.16 0.21 3.76 16 19 F -0.21 -2.75 17.34 2.25 0.04 -2.71 16 20 F -0.20 -3.26 15.98 2.25 0.04 -3.23 16 21 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 23 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 26 H 0.08 1.46 7.50 -51.93 -0.39 1.07 16 27 H 0.05 0.93 6.46 -51.93 -0.34 0.59 16 28 H 0.27 6.99 8.30 -40.82 -0.34 6.65 16 29 H 0.11 1.49 8.14 -51.93 -0.42 1.06 16 30 H 0.10 1.38 7.77 -51.93 -0.40 0.98 16 31 H 0.11 1.59 8.14 -51.93 -0.42 1.16 16 LS Contribution 278.86 15.07 4.20 4.20 Total: -1.00 -30.65 278.86 -4.00 -34.65 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: -3.60 Total: -0.95 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: -1.28 Total: -8.64 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: 1.63 Total: -37.65 kcal Atomic # 9 Polarization: -6.02 SS G_CDS: 0.08 Total: -5.94 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.03 Total: 14.33 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.65 -4.00 -34.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958544830.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.682 kcal (2) G-P(sol) polarization free energy of solvation -30.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds