Wall clock time and date at job start Mon Mar 30 2020 04:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46924 * 2 1 4 4 C 1.50702 * 109.47041 * 180.02562 * 3 2 1 5 5 C 1.39015 * 126.76809 * 269.68801 * 4 3 2 6 6 C 1.41493 * 126.02212 * 359.97438 * 5 4 3 7 7 H 1.07997 * 120.00055 * 354.30564 * 6 5 4 8 8 C 1.39741 * 120.00071 * 174.30314 * 6 5 4 9 9 N 1.30982 * 119.99956 * 6.04642 * 8 6 5 10 10 Si 1.86802 * 120.00062 * 186.04158 * 8 6 5 11 11 H 1.48496 * 109.47226 * 94.97902 * 10 8 6 12 12 H 1.48496 * 109.47128 * 214.98200 * 10 8 6 13 13 H 1.48504 * 109.46838 * 334.98294 * 10 8 6 14 14 N 1.34845 * 107.95824 * 179.83135 * 5 4 3 15 15 N 1.28669 * 109.63175 * 0.43785 * 14 5 4 16 16 N 1.35010 * 126.77469 * 89.99985 * 4 3 2 17 17 C 1.46500 * 126.49280 * 0.02562 * 16 4 3 18 18 C 1.53004 * 109.47068 * 90.00598 * 17 16 4 19 19 F 1.39894 * 109.47164 * 174.99950 * 18 17 16 20 20 F 1.39903 * 109.46859 * 295.00079 * 18 17 16 21 21 H 1.09004 * 109.47096 * 60.00081 * 1 2 3 22 22 H 1.08995 * 109.46816 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47033 * 299.99864 * 1 2 3 24 24 H 1.08998 * 109.47033 * 240.00136 * 2 1 3 25 25 H 1.08995 * 109.47000 * 119.99748 * 2 1 3 26 26 H 1.08998 * 109.47155 * 60.00211 * 3 2 1 27 27 H 1.09004 * 109.47168 * 299.99875 * 3 2 1 28 28 H 0.97004 * 119.99855 * 180.02562 * 9 8 6 29 29 H 1.09005 * 109.47410 * 210.00314 * 17 16 4 30 30 H 1.08996 * 109.47222 * 330.00231 * 17 16 4 31 31 H 1.09000 * 109.47281 * 54.99778 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4426 -0.0006 5 6 4.3796 1.4485 1.1126 6 6 3.9615 1.4562 2.4643 7 1 2.9129 1.5506 2.7047 8 6 4.9055 1.3414 3.4883 9 7 6.1840 1.3460 3.2039 10 14 4.3439 1.1816 5.2627 11 1 4.2863 -0.2545 5.6363 12 1 5.3031 1.8860 6.1509 13 1 2.9957 1.7862 5.4116 14 7 5.6558 1.4424 0.6773 15 7 5.6738 1.4426 -0.6093 16 7 4.3548 1.4428 -1.0824 17 6 3.9324 1.4435 -2.4852 18 6 3.7860 2.8863 -2.9730 19 9 3.4942 2.8886 -4.3411 20 9 2.7484 3.5119 -2.2736 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6767 1.9564 0.8900 27 1 1.6766 1.9564 -0.8900 28 1 6.8393 1.2660 3.9147 29 1 4.6797 0.9296 -3.0900 30 1 2.9754 0.9301 -2.5767 31 1 4.7176 3.4249 -2.7993 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958544830.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:55 Heat of formation + Delta-G solvation = -52.438089 kcal Electronic energy + Delta-G solvation = -18086.561896 eV Core-core repulsion = 14846.264179 eV Total energy + Delta-G solvation = -3240.297717 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 245.103 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.07582 -48.07979 -41.96407 -36.25780 -35.74935 -34.55305 -31.59462 -30.24829 -28.03146 -26.37307 -24.83329 -22.60918 -22.28404 -20.86270 -19.27216 -18.62455 -18.24868 -17.69739 -16.83624 -16.47952 -15.81339 -15.52842 -15.14347 -14.95726 -14.71748 -14.44606 -14.12704 -13.91874 -13.62755 -13.19682 -12.95627 -12.87540 -12.70368 -12.39389 -12.34956 -12.02207 -11.98695 -11.61267 -11.51312 -11.19966 -10.83013 -10.38189 -9.39711 -8.32763 -6.20121 0.83168 1.43519 1.44766 1.58621 1.69336 2.29332 2.33882 2.68813 3.16447 3.35908 3.49304 3.71059 4.02452 4.07427 4.15669 4.32633 4.34537 4.62296 4.68984 4.91530 4.99372 5.11215 5.14615 5.24983 5.30331 5.51718 5.54773 5.62646 6.27271 6.39698 6.84124 7.07896 8.18606 8.66964 Molecular weight = 245.10amu Principal moments of inertia in cm(-1) A = 0.024670 B = 0.007736 C = 0.006421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.731662 B = 3618.562751 C = 4359.746237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.113 4.113 3 C -0.018 4.018 4 C -0.070 4.070 5 C 0.109 3.891 6 C -0.477 4.477 7 H 0.092 0.908 8 C 0.022 3.978 9 N -0.826 5.826 10 Si 0.983 3.017 11 H -0.268 1.268 12 H -0.278 1.278 13 H -0.251 1.251 14 N -0.272 5.272 15 N -0.162 5.162 16 N -0.369 5.369 17 C 0.084 3.916 18 C 0.258 3.742 19 F -0.194 7.194 20 F -0.208 7.208 21 H 0.065 0.935 22 H 0.064 0.936 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.046 0.954 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.273 0.727 29 H 0.141 0.859 30 H 0.129 0.871 31 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.031 -0.523 -8.784 13.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.151 4.151 3 C -0.057 4.057 4 C -0.204 4.204 5 C -0.023 4.023 6 C -0.514 4.514 7 H 0.110 0.890 8 C -0.192 4.192 9 N -0.454 5.454 10 Si 0.804 3.196 11 H -0.193 1.193 12 H -0.203 1.203 13 H -0.174 1.174 14 N -0.142 5.142 15 N -0.136 5.136 16 N -0.163 5.163 17 C -0.040 4.040 18 C 0.203 3.797 19 F -0.175 7.175 20 F -0.190 7.190 21 H 0.084 0.916 22 H 0.083 0.917 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.065 0.935 26 H 0.092 0.908 27 H 0.097 0.903 28 H 0.083 0.917 29 H 0.159 0.841 30 H 0.147 0.853 31 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -8.286 -0.517 -9.167 12.368 hybrid contribution -0.713 0.064 0.907 1.156 sum -8.999 -0.453 -8.259 12.223 Atomic orbital electron populations 1.21722 0.93517 1.02326 1.02401 1.21449 0.97025 0.95307 1.01327 1.19891 0.84913 0.98061 1.02875 1.22141 0.95176 1.16749 0.86352 1.19523 0.86315 1.01379 0.95043 1.18898 0.95079 1.49202 0.88201 0.89041 1.26730 0.94389 0.92740 1.05324 1.70162 1.02298 1.37635 1.35303 0.85181 0.79246 0.78867 0.76279 1.19350 1.20302 1.17444 1.75034 1.21727 1.16695 1.00729 1.81406 0.97704 1.27943 1.06592 1.49538 1.06319 1.54808 1.05659 1.22757 1.05920 0.95897 0.79420 1.22238 0.89358 0.94969 0.73185 1.92995 1.94903 1.97323 1.32300 1.92981 1.62454 1.84436 1.79101 0.91609 0.91732 0.92509 0.92529 0.93532 0.90785 0.90287 0.91687 0.84111 0.85266 0.86401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 9.91 71.98 0.71 -2.44 16 2 C -0.11 -3.35 5.92 30.60 0.18 -3.17 16 3 C -0.02 -0.61 5.10 29.85 0.15 -0.46 16 4 C -0.07 -3.11 6.37 42.26 0.27 -2.84 16 5 C 0.11 6.01 6.72 39.67 0.27 6.28 16 6 C -0.48 -26.16 9.12 23.44 0.21 -25.94 16 7 H 0.09 4.61 7.26 -2.91 -0.02 4.59 16 8 C 0.02 1.19 5.49 85.18 0.47 1.66 16 9 N -0.83 -48.19 11.95 21.80 0.26 -47.93 16 10 Si 0.98 40.50 29.56 68.60 2.03 42.52 16 11 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 12 H -0.28 -11.21 7.11 99.48 0.71 -10.50 16 13 H -0.25 -9.67 7.11 99.48 0.71 -8.96 16 14 N -0.27 -16.00 10.58 -52.51 -0.56 -16.55 16 15 N -0.16 -8.24 13.74 37.02 0.51 -7.73 16 16 N -0.37 -15.11 3.62 -331.63 -1.20 -16.31 16 17 C 0.08 2.29 6.35 86.38 0.55 2.84 16 18 C 0.26 6.68 5.55 71.98 0.40 7.08 16 19 F -0.19 -4.54 17.34 44.97 0.78 -3.76 16 20 F -0.21 -6.33 15.98 44.97 0.72 -5.61 16 21 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 22 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 23 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.07 2.65 7.50 -2.39 -0.02 2.64 16 27 H 0.08 2.36 6.46 -2.38 -0.02 2.35 16 28 H 0.27 14.70 8.30 -92.71 -0.77 13.93 16 29 H 0.14 3.19 8.14 -2.38 -0.02 3.17 16 30 H 0.13 2.92 7.77 -2.39 -0.02 2.90 16 31 H 0.12 3.05 8.14 -2.39 -0.02 3.03 16 Total: -1.00 -69.28 278.86 6.89 -62.38 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: 1.14 Total: 9.97 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: 3.21 Total: -16.98 kcal Atomic # 7 Polarization: -87.54 SS G_CDS: -0.99 Total: -88.52 kcal Atomic # 9 Polarization: -10.87 SS G_CDS: 1.50 Total: -9.37 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.52 kcal Total: -69.28 6.89 -62.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958544830.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.944 kcal (2) G-P(sol) polarization free energy of solvation -69.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds