Wall clock time and date at job start Mon Mar 30 2020 03:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37752 * 119.74225 * 2 1 4 4 C 1.39634 * 119.77695 * 180.02562 * 3 2 1 5 5 N 1.35896 * 133.50713 * 180.29759 * 4 3 2 6 6 C 1.30090 * 109.74143 * 180.02562 * 5 4 3 7 7 C 1.50696 * 124.98078 * 179.89506 * 6 5 4 8 8 N 1.46899 * 109.47244 * 270.76833 * 7 6 5 9 9 N 1.36536 * 110.04383 * 359.62977 * 6 5 4 10 10 C 1.37310 * 126.39966 * 180.25502 * 9 6 5 11 11 H 1.08003 * 119.99877 * 326.16988 * 10 9 6 12 12 C 1.38908 * 120.00443 * 146.17293 * 10 9 6 13 13 N 1.31381 * 119.99914 * 340.04513 * 12 10 9 14 14 Si 1.86810 * 120.00084 * 160.04303 * 12 10 9 15 15 H 1.48495 * 109.47042 * 60.00171 * 14 12 10 16 16 H 1.48495 * 109.46945 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.46638 * 299.99968 * 14 12 10 18 18 C 1.38392 * 107.20348 * 0.22686 * 9 6 5 19 19 C 1.38672 * 134.04446 * 180.02562 * 18 9 6 20 20 C 1.37994 * 119.82861 * 179.97438 * 19 18 9 21 21 C 1.50703 * 119.77653 * 180.02562 * 20 19 18 22 22 H 1.08995 * 109.46650 * 270.01858 * 1 2 3 23 23 H 1.08991 * 109.47015 * 30.01946 * 1 2 3 24 24 H 1.09000 * 109.46868 * 150.01932 * 1 2 3 25 25 H 1.08002 * 120.10979 * 0.02562 * 3 2 1 26 26 H 1.09002 * 109.47205 * 150.76543 * 7 6 5 27 27 H 1.09006 * 109.47405 * 30.76823 * 7 6 5 28 28 H 1.00901 * 111.00336 * 180.02562 * 8 7 6 29 29 H 1.00908 * 110.99567 * 303.95140 * 8 7 6 30 30 H 0.96999 * 120.00142 * 177.34636 * 13 12 10 31 31 H 1.07997 * 120.08029 * 0.02562 * 19 18 9 32 32 H 1.08993 * 109.47538 * 90.00468 * 21 20 19 33 33 H 1.09009 * 109.47016 * 210.00491 * 21 20 19 34 34 H 1.09002 * 109.47525 * 329.99420 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1904 1.1961 0.0000 4 6 3.5868 1.1969 -0.0005 5 7 4.5218 2.1831 0.0044 6 6 5.7127 1.6596 0.0006 7 6 7.0005 2.4422 0.0019 8 7 7.4073 2.7180 -1.3825 9 7 5.6249 0.2970 0.0011 10 6 6.6754 -0.5872 0.0027 11 1 7.5894 -0.3407 -0.5171 12 6 6.5626 -1.7987 0.6728 13 7 5.6531 -1.9494 1.6089 14 14 7.7041 -3.2136 0.2431 15 1 9.1116 -2.8031 0.4786 16 1 7.3809 -4.3864 1.0946 17 1 7.5266 -3.5762 -1.1860 18 6 4.2793 -0.0264 0.0004 19 6 3.5749 -1.2209 0.0010 20 6 2.1951 -1.2041 0.0005 21 6 1.4307 -2.5029 0.0016 22 1 -0.3632 0.0003 1.0276 23 1 -0.3633 0.8897 -0.5141 24 1 -0.3633 -0.8902 -0.5135 25 1 1.6480 2.1300 0.0004 26 1 7.7774 1.8625 0.5003 27 1 6.8532 3.3834 0.5316 28 1 8.2692 3.2419 -1.4085 29 1 7.4878 1.8633 -1.9127 30 1 5.5486 -2.8070 2.0500 31 1 4.1049 -2.1619 0.0026 32 1 1.2460 -2.8149 1.0295 33 1 0.4796 -2.3653 -0.5128 34 1 2.0136 -3.2680 -0.5112 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019750918.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:26 Heat of formation + Delta-G solvation = 57.217044 kcal Electronic energy + Delta-G solvation = -17725.860095 eV Core-core repulsion = 15044.546912 eV Total energy + Delta-G solvation = -2681.313184 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 245.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.76390 -37.20894 -34.24005 -33.98218 -31.41511 -30.81742 -30.29349 -26.50440 -26.23854 -24.92377 -23.44380 -20.89352 -20.03305 -19.22001 -17.56100 -15.84571 -15.53330 -15.25793 -14.73897 -14.39385 -14.08421 -13.61380 -13.21252 -13.07160 -12.90622 -12.41468 -12.22851 -11.95022 -11.87127 -11.50071 -11.38827 -11.27304 -11.11647 -10.77262 -10.57264 -10.28244 -9.95427 -9.42486 -8.84843 -8.61985 -8.30644 -7.17622 -6.80430 -6.64226 -4.55338 2.12204 2.68917 2.94328 2.98283 3.00541 3.74111 3.95955 4.49758 4.69311 5.02785 5.19640 5.29727 5.65009 5.73945 5.82438 5.91910 5.98490 6.06328 6.14073 6.25532 6.28739 6.38709 6.45843 6.66872 6.76717 6.86798 6.97070 7.06722 7.21813 7.44648 7.54630 7.69234 7.78691 7.90503 8.06602 8.18234 8.60646 9.23865 9.41341 10.16940 Molecular weight = 245.12amu Principal moments of inertia in cm(-1) A = 0.017166 B = 0.011146 C = 0.007110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.779853 B = 2511.518721 C = 3936.972418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.113 4.113 3 C -0.084 4.084 4 C 0.027 3.973 5 N -0.515 5.515 6 C 0.214 3.786 7 C 0.158 3.842 8 N -0.841 5.841 9 N -0.286 5.286 10 C -0.361 4.361 11 H 0.104 0.896 12 C 0.056 3.944 13 N -0.817 5.817 14 Si 0.924 3.076 15 H -0.267 1.267 16 H -0.277 1.277 17 H -0.265 1.265 18 C 0.048 3.952 19 C -0.040 4.040 20 C -0.124 4.124 21 C -0.098 4.098 22 H 0.057 0.943 23 H 0.054 0.946 24 H 0.060 0.940 25 H 0.108 0.892 26 H 0.046 0.954 27 H 0.089 0.911 28 H 0.338 0.662 29 H 0.342 0.658 30 H 0.281 0.719 31 H 0.115 0.885 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.442 -1.026 -2.258 2.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.116 4.116 3 C -0.104 4.104 4 C -0.097 4.097 5 N -0.238 5.238 6 C -0.049 4.049 7 C 0.026 3.974 8 N -0.372 5.372 9 N 0.042 4.958 10 C -0.489 4.489 11 H 0.121 0.879 12 C -0.158 4.158 13 N -0.446 5.446 14 Si 0.748 3.252 15 H -0.191 1.191 16 H -0.201 1.201 17 H -0.190 1.190 18 C -0.067 4.067 19 C -0.060 4.060 20 C -0.127 4.127 21 C -0.155 4.155 22 H 0.075 0.925 23 H 0.073 0.927 24 H 0.079 0.921 25 H 0.126 0.874 26 H 0.064 0.936 27 H 0.107 0.893 28 H 0.150 0.850 29 H 0.154 0.846 30 H 0.092 0.908 31 H 0.133 0.867 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.166 0.017 -2.085 3.006 hybrid contribution 1.692 -2.202 0.310 2.794 sum -0.474 -2.185 -1.775 2.854 Atomic orbital electron populations 1.20658 0.92476 1.01485 1.01084 1.19087 0.94549 0.92252 1.05737 1.19677 0.90376 0.96538 1.03763 1.18876 0.93540 0.89258 1.07990 1.70137 0.97373 1.31074 1.25231 1.22961 0.94820 0.81389 1.05683 1.19815 0.89981 0.97672 0.89908 1.58681 1.38524 1.26924 1.13055 1.41138 1.04036 1.04535 1.46063 1.19492 0.95426 0.98662 1.35360 0.87876 1.25530 0.97713 0.99622 0.92899 1.70065 1.32000 1.25637 1.16874 0.86042 0.80119 0.79649 0.79371 1.19148 1.20135 1.19008 1.18627 0.84268 0.95522 1.08292 1.19835 0.91654 0.95941 0.98604 1.19164 0.92768 0.93988 1.06770 1.20626 0.99075 0.94692 1.01068 0.92455 0.92677 0.92080 0.87376 0.93609 0.89315 0.85009 0.84603 0.90793 0.86704 0.92468 0.92212 0.92829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.55 9.58 36.01 0.35 -1.20 16 2 C -0.11 -2.31 5.88 -104.63 -0.61 -2.92 16 3 C -0.08 -1.89 9.73 -39.24 -0.38 -2.27 16 4 C 0.03 0.71 7.22 -84.66 -0.61 0.10 16 5 N -0.51 -13.46 11.27 -8.11 -0.09 -13.55 16 6 C 0.21 5.28 7.34 -154.38 -1.13 4.14 16 7 C 0.16 3.08 7.07 -4.98 -0.04 3.05 16 8 N -0.84 -14.22 9.61 -11.41 -0.11 -14.33 16 9 N -0.29 -7.52 2.86 -56.65 -0.16 -7.68 16 10 C -0.36 -9.08 9.30 -14.85 -0.14 -9.22 16 11 H 0.10 2.39 7.91 -52.48 -0.42 1.98 16 12 C 0.06 1.36 4.54 -17.50 -0.08 1.28 16 13 N -0.82 -21.07 10.59 55.49 0.59 -20.48 16 14 Si 0.92 18.34 29.60 -169.99 -5.03 13.31 16 15 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 16 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 17 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 18 C 0.05 1.29 6.15 -83.86 -0.52 0.77 16 19 C -0.04 -0.98 8.20 -39.51 -0.32 -1.31 16 20 C -0.12 -2.63 5.88 -104.55 -0.62 -3.24 16 21 C -0.10 -1.64 9.59 36.01 0.35 -1.29 16 22 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.05 0.77 8.08 -51.93 -0.42 0.35 16 24 H 0.06 0.84 5.91 -51.93 -0.31 0.53 16 25 H 0.11 2.21 8.06 -52.49 -0.42 1.79 16 26 H 0.05 0.87 7.76 -51.93 -0.40 0.46 16 27 H 0.09 1.63 8.14 -51.93 -0.42 1.20 16 28 H 0.34 4.42 9.08 -39.29 -0.36 4.06 16 29 H 0.34 5.86 8.99 -39.29 -0.35 5.51 16 30 H 0.28 6.75 8.31 -40.82 -0.34 6.41 16 31 H 0.12 2.87 6.26 -52.49 -0.33 2.54 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.06 0.85 5.91 -51.92 -0.31 0.55 16 34 H 0.05 0.86 8.08 -51.93 -0.42 0.44 16 LS Contribution 284.51 15.07 4.29 4.29 Total: -1.00 -30.07 284.51 -8.41 -38.49 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -4.14 Total: 12.08 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: -3.76 Total: -12.11 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: 0.22 Total: -56.05 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -5.03 Total: 13.31 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -30.07 -8.41 -38.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019750918.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.703 kcal (2) G-P(sol) polarization free energy of solvation -30.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds