Wall clock time and date at job start Mon Mar 30 2020 04:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47364 * 2 1 4 4 C 1.52998 * 109.47569 * 120.00403 * 2 1 3 5 5 N 1.46899 * 109.47148 * 294.99983 * 4 2 1 6 6 C 1.50701 * 109.47094 * 240.00615 * 2 1 3 7 7 N 1.30097 * 124.97927 * 300.20842 * 6 2 1 8 8 C 1.35900 * 109.73624 * 180.27103 * 7 6 2 9 9 C 1.39674 * 133.50435 * 179.72639 * 8 7 6 10 10 C 1.37709 * 119.77986 * 180.02562 * 9 8 7 11 11 C 1.38732 * 120.51479 * 359.97438 * 10 9 8 12 12 C 1.37954 * 120.43568 * 0.02562 * 11 10 9 13 13 C 1.38704 * 119.83432 * 0.02562 * 12 11 10 14 14 N 1.36535 * 124.98254 * 119.99789 * 6 2 1 15 15 C 1.37304 * 126.39954 * 359.97438 * 14 6 2 16 16 H 1.08002 * 120.00119 * 32.79425 * 15 14 6 17 17 C 1.38910 * 120.00130 * 212.79528 * 15 14 6 18 18 N 1.31383 * 120.00181 * 24.80001 * 17 15 14 19 19 Si 1.86807 * 120.00007 * 204.80260 * 17 15 14 20 20 H 1.48496 * 109.47132 * 179.97438 * 19 17 15 21 21 H 1.48499 * 109.46995 * 300.00093 * 19 17 15 22 22 H 1.48505 * 109.47127 * 59.99826 * 19 17 15 23 23 H 1.09003 * 109.46869 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46889 * 299.99656 * 1 2 3 25 25 H 1.08996 * 109.46970 * 59.99762 * 1 2 3 26 26 H 1.09002 * 109.47306 * 54.99865 * 4 2 1 27 27 H 1.09001 * 109.47627 * 175.00012 * 4 2 1 28 28 H 1.00900 * 111.00240 * 179.97438 * 5 4 2 29 29 H 1.00896 * 110.99856 * 303.95555 * 5 4 2 30 30 H 1.08002 * 120.11206 * 359.97270 * 9 8 7 31 31 H 1.07997 * 119.74383 * 180.02562 * 10 9 8 32 32 H 1.08002 * 119.77460 * 180.02562 * 11 10 9 33 33 H 1.07999 * 120.08122 * 179.97438 * 12 11 10 34 34 H 0.96998 * 119.99487 * 5.60286 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 1.6515 0.0373 2.4456 6 6 2.0323 -0.7103 -1.2306 7 7 1.7752 -1.9490 -1.5339 8 6 2.3867 -2.2714 -2.7039 9 6 2.4471 -3.4395 -3.4674 10 6 3.1695 -3.4538 -4.6397 11 6 3.8379 -2.3165 -5.0692 12 6 3.7884 -1.1547 -4.3270 13 6 3.0665 -1.1224 -3.1431 14 7 2.8205 -0.1470 -2.1926 15 6 3.2874 1.1442 -2.2104 16 1 3.5178 1.6480 -1.2833 17 6 3.4633 1.8025 -3.4209 18 7 2.7684 1.4373 -4.4744 19 14 4.6881 3.2070 -3.5509 20 1 4.6879 3.7371 -4.9380 21 1 4.3041 4.2875 -2.6074 22 1 6.0464 2.7124 -3.2107 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.6055 -1.7199 1.2951 27 1 3.1264 -0.7995 1.2055 28 1 1.9767 -0.4192 3.2846 29 1 1.9882 0.9871 2.3966 30 1 1.9296 -4.3288 -3.1389 31 1 3.2154 -4.3572 -5.2297 32 1 4.4006 -2.3410 -5.9907 33 1 4.3112 -0.2728 -4.6665 34 1 2.0754 0.7641 -4.3887 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076015227.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:24 Heat of formation + Delta-G solvation = 52.676362 kcal Electronic energy + Delta-G solvation = -17797.933893 eV Core-core repulsion = 15116.423811 eV Total energy + Delta-G solvation = -2681.510083 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 245.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.01965 -36.77230 -35.47411 -34.37146 -31.25080 -31.04203 -29.26847 -27.70095 -25.12565 -24.89157 -22.41867 -21.13707 -20.67340 -19.21141 -17.89161 -16.45338 -15.71812 -15.49174 -14.79204 -14.41116 -14.09862 -14.05731 -13.73121 -13.24513 -12.98616 -12.59040 -12.25262 -11.93292 -11.42266 -11.28040 -11.13926 -10.84857 -10.73947 -10.61561 -10.48175 -10.34059 -10.14141 -9.62973 -8.93242 -8.78401 -8.52155 -7.55652 -7.07809 -6.97485 -4.57637 1.97248 2.58233 3.06730 3.11535 3.29375 3.83981 3.87563 4.28781 4.68404 4.82727 4.91538 5.19669 5.39333 5.57608 5.68924 5.84571 5.88060 6.09030 6.14950 6.18797 6.35299 6.50304 6.53245 6.62919 6.67051 6.75833 6.87234 7.00591 7.24398 7.32911 7.45258 7.55884 7.61252 7.74261 7.86135 8.01083 8.58218 9.08391 9.21271 10.09531 Molecular weight = 245.12amu Principal moments of inertia in cm(-1) A = 0.015165 B = 0.011809 C = 0.007256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.865296 B = 2370.551054 C = 3857.778825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.007 3.993 3 H 0.083 0.917 4 C 0.076 3.924 5 N -0.848 5.848 6 C 0.215 3.785 7 N -0.522 5.522 8 C 0.031 3.969 9 C -0.085 4.085 10 C -0.144 4.144 11 C -0.148 4.148 12 C -0.068 4.068 13 C 0.010 3.990 14 N -0.290 5.290 15 C -0.439 4.439 16 H 0.101 0.899 17 C 0.026 3.974 18 N -0.823 5.823 19 Si 1.077 2.923 20 H -0.272 1.272 21 H -0.277 1.277 22 H -0.277 1.277 23 H 0.058 0.942 24 H 0.065 0.935 25 H 0.046 0.954 26 H 0.080 0.920 27 H 0.023 0.977 28 H 0.338 0.662 29 H 0.337 0.663 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.122 0.878 34 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.316 -0.976 4.928 5.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.013 4.013 3 H 0.101 0.899 4 C -0.055 4.055 5 N -0.377 5.377 6 C -0.047 4.047 7 N -0.244 5.244 8 C -0.093 4.093 9 C -0.105 4.105 10 C -0.165 4.165 11 C -0.169 4.169 12 C -0.088 4.088 13 C -0.105 4.105 14 N 0.040 4.960 15 C -0.566 4.566 16 H 0.119 0.881 17 C -0.189 4.189 18 N -0.449 5.449 19 Si 0.900 3.100 20 H -0.196 1.196 21 H -0.202 1.202 22 H -0.203 1.203 23 H 0.077 0.923 24 H 0.084 0.916 25 H 0.065 0.935 26 H 0.099 0.901 27 H 0.041 0.959 28 H 0.150 0.850 29 H 0.149 0.851 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.140 0.860 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.761 -0.407 4.102 4.192 hybrid contribution 0.829 -0.389 0.621 1.106 sum 1.590 -0.796 4.723 5.047 Atomic orbital electron populations 1.21591 0.93275 1.02254 1.01075 1.19317 0.96599 0.97805 0.87608 0.89918 1.21733 0.97099 0.97866 0.88810 1.58723 1.68342 1.06363 1.04299 1.23076 0.95468 0.90748 0.95400 1.70126 1.26700 1.12702 1.14873 1.18893 1.01713 0.94129 0.94597 1.19922 1.00709 0.95288 0.94563 1.20550 1.00888 0.97972 0.97082 1.20595 1.03180 0.93104 0.99973 1.20206 0.98492 0.98013 0.92131 1.18892 1.05786 0.89582 0.96267 1.41346 1.30988 1.08476 1.15234 1.20502 1.49723 0.88428 0.97986 0.88092 1.26749 0.99160 1.02117 0.90921 1.70637 1.15431 1.26760 1.32114 0.83408 0.75060 0.74161 0.77397 1.19649 1.20216 1.20264 0.92257 0.91625 0.93513 0.90113 0.95884 0.85013 0.85063 0.87183 0.87146 0.87077 0.86050 0.89959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.23 9.06 37.16 0.34 -1.90 16 2 C 0.01 0.14 2.86 -91.77 -0.26 -0.12 16 3 H 0.08 1.63 6.96 -51.93 -0.36 1.26 16 4 C 0.08 1.27 6.15 -3.83 -0.02 1.25 16 5 N -0.85 -11.17 9.08 -10.37 -0.09 -11.27 16 6 C 0.21 5.14 6.34 -154.37 -0.98 4.17 16 7 N -0.52 -12.90 11.26 -8.10 -0.09 -12.99 16 8 C 0.03 0.78 7.23 -84.66 -0.61 0.17 16 9 C -0.08 -1.83 10.10 -39.24 -0.40 -2.23 16 10 C -0.14 -2.81 10.02 -39.59 -0.40 -3.21 16 11 C -0.15 -3.06 10.03 -39.50 -0.40 -3.46 16 12 C -0.07 -1.65 8.44 -39.51 -0.33 -1.98 16 13 C 0.01 0.26 5.57 -83.86 -0.47 -0.21 16 14 N -0.29 -7.56 2.68 -56.64 -0.15 -7.71 16 15 C -0.44 -11.21 9.23 -14.85 -0.14 -11.34 16 16 H 0.10 2.45 7.36 -52.49 -0.39 2.06 16 17 C 0.03 0.65 4.34 -17.49 -0.08 0.57 16 18 N -0.82 -22.02 11.59 55.49 0.64 -21.38 16 19 Si 1.08 21.38 29.99 -169.99 -5.10 16.28 16 20 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 21 H -0.28 -5.14 7.11 56.52 0.40 -4.74 16 22 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 23 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 24 H 0.06 1.04 7.75 -51.93 -0.40 0.64 16 25 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 27 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.34 3.68 9.08 -39.29 -0.36 3.32 16 29 H 0.34 4.08 8.99 -39.29 -0.35 3.73 16 30 H 0.11 2.10 8.06 -52.49 -0.42 1.68 16 31 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 32 H 0.11 1.96 8.06 -52.49 -0.42 1.54 16 33 H 0.12 3.04 6.35 -52.49 -0.33 2.71 16 34 H 0.29 8.23 6.96 -40.82 -0.28 7.95 16 LS Contribution 285.48 15.07 4.30 4.30 Total: -1.00 -28.95 285.48 -8.46 -37.42 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -4.23 Total: 13.62 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: -3.74 Total: -18.28 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: 0.31 Total: -53.35 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.10 Total: 16.28 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.95 -8.46 -37.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076015227.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.092 kcal (2) G-P(sol) polarization free energy of solvation -28.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds