Wall clock time and date at job start Mon Mar 30 2020 04:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47364 * 2 1 4 4 C 1.52998 * 109.47569 * 120.00403 * 2 1 3 5 5 N 1.46899 * 109.47148 * 294.99983 * 4 2 1 6 6 C 1.50701 * 109.47094 * 240.00615 * 2 1 3 7 7 N 1.30097 * 124.97927 * 300.20842 * 6 2 1 8 8 C 1.35900 * 109.73624 * 180.27103 * 7 6 2 9 9 C 1.39674 * 133.50435 * 179.72639 * 8 7 6 10 10 C 1.37709 * 119.77986 * 180.02562 * 9 8 7 11 11 C 1.38732 * 120.51479 * 359.97438 * 10 9 8 12 12 C 1.37954 * 120.43568 * 0.02562 * 11 10 9 13 13 C 1.38704 * 119.83432 * 0.02562 * 12 11 10 14 14 N 1.36535 * 124.98254 * 119.99789 * 6 2 1 15 15 C 1.37304 * 126.39954 * 359.97438 * 14 6 2 16 16 H 1.08002 * 120.00119 * 32.79425 * 15 14 6 17 17 C 1.38910 * 120.00130 * 212.79528 * 15 14 6 18 18 N 1.31383 * 120.00181 * 24.80001 * 17 15 14 19 19 Si 1.86807 * 120.00007 * 204.80260 * 17 15 14 20 20 H 1.48496 * 109.47132 * 179.97438 * 19 17 15 21 21 H 1.48499 * 109.46995 * 300.00093 * 19 17 15 22 22 H 1.48505 * 109.47127 * 59.99826 * 19 17 15 23 23 H 1.09003 * 109.46869 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46889 * 299.99656 * 1 2 3 25 25 H 1.08996 * 109.46970 * 59.99762 * 1 2 3 26 26 H 1.09002 * 109.47306 * 54.99865 * 4 2 1 27 27 H 1.09001 * 109.47627 * 175.00012 * 4 2 1 28 28 H 1.00900 * 111.00240 * 179.97438 * 5 4 2 29 29 H 1.00896 * 110.99856 * 303.95555 * 5 4 2 30 30 H 1.08002 * 120.11206 * 359.97270 * 9 8 7 31 31 H 1.07997 * 119.74383 * 180.02562 * 10 9 8 32 32 H 1.08002 * 119.77460 * 180.02562 * 11 10 9 33 33 H 1.07999 * 120.08122 * 179.97438 * 12 11 10 34 34 H 0.96998 * 119.99487 * 5.60286 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 1.6515 0.0373 2.4456 6 6 2.0323 -0.7103 -1.2306 7 7 1.7752 -1.9490 -1.5339 8 6 2.3867 -2.2714 -2.7039 9 6 2.4471 -3.4395 -3.4674 10 6 3.1695 -3.4538 -4.6397 11 6 3.8379 -2.3165 -5.0692 12 6 3.7884 -1.1547 -4.3270 13 6 3.0665 -1.1224 -3.1431 14 7 2.8205 -0.1470 -2.1926 15 6 3.2874 1.1442 -2.2104 16 1 3.5178 1.6480 -1.2833 17 6 3.4633 1.8025 -3.4209 18 7 2.7684 1.4373 -4.4744 19 14 4.6881 3.2070 -3.5509 20 1 4.6879 3.7371 -4.9380 21 1 4.3041 4.2875 -2.6074 22 1 6.0464 2.7124 -3.2107 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.6055 -1.7199 1.2951 27 1 3.1264 -0.7995 1.2055 28 1 1.9767 -0.4192 3.2846 29 1 1.9882 0.9871 2.3966 30 1 1.9296 -4.3288 -3.1389 31 1 3.2154 -4.3572 -5.2297 32 1 4.4006 -2.3410 -5.9907 33 1 4.3112 -0.2728 -4.6665 34 1 2.0754 0.7641 -4.3887 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076015227.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:24 Heat of formation + Delta-G solvation = 34.395556 kcal Electronic energy + Delta-G solvation = -17798.726609 eV Core-core repulsion = 15116.423811 eV Total energy + Delta-G solvation = -2682.302798 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 245.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.83172 -38.40401 -37.01535 -36.18376 -32.91524 -32.62567 -31.02122 -29.41789 -26.83476 -26.51785 -24.01468 -22.91603 -22.42439 -20.92276 -19.66461 -18.16287 -17.45855 -16.98247 -16.44338 -15.97280 -15.67363 -15.59155 -15.25267 -15.00420 -14.70346 -14.13330 -14.03924 -13.38033 -13.00707 -12.88879 -12.76114 -12.53942 -12.33773 -12.20253 -12.06643 -11.94849 -11.78994 -11.44942 -10.78396 -10.65911 -9.68712 -9.45197 -8.89872 -8.82022 -6.55039 0.21118 0.84822 1.45768 1.51594 1.74773 2.05623 2.19368 2.57384 2.83266 3.12985 3.35050 3.74345 3.90910 4.01517 4.12458 4.25004 4.31284 4.52110 4.62694 4.72531 4.75320 4.79787 4.81427 5.02153 5.09288 5.18320 5.21671 5.30771 5.56284 5.66954 5.72592 5.93680 5.96693 6.11070 6.26058 6.59026 6.69423 7.21986 7.34212 8.09729 Molecular weight = 245.12amu Principal moments of inertia in cm(-1) A = 0.015165 B = 0.011809 C = 0.007256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.865296 B = 2370.551054 C = 3857.778825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.007 3.993 3 H 0.078 0.922 4 C 0.093 3.907 5 N -0.839 5.839 6 C 0.207 3.793 7 N -0.535 5.535 8 C 0.000 4.000 9 C -0.093 4.093 10 C -0.129 4.129 11 C -0.134 4.134 12 C -0.100 4.100 13 C -0.018 4.018 14 N -0.315 5.315 15 C -0.459 4.459 16 H 0.106 0.894 17 C -0.009 4.009 18 N -0.844 5.844 19 Si 1.126 2.874 20 H -0.275 1.275 21 H -0.253 1.253 22 H -0.267 1.267 23 H 0.052 0.948 24 H 0.092 0.908 25 H 0.028 0.972 26 H 0.072 0.928 27 H 0.010 0.990 28 H 0.355 0.645 29 H 0.347 0.653 30 H 0.135 0.865 31 H 0.161 0.839 32 H 0.146 0.854 33 H 0.103 0.897 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.851 -1.519 5.214 5.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.014 4.014 3 H 0.096 0.904 4 C -0.039 4.039 5 N -0.371 5.371 6 C -0.056 4.056 7 N -0.258 5.258 8 C -0.123 4.123 9 C -0.113 4.113 10 C -0.149 4.149 11 C -0.154 4.154 12 C -0.121 4.121 13 C -0.133 4.133 14 N 0.014 4.986 15 C -0.586 4.586 16 H 0.124 0.876 17 C -0.218 4.218 18 N -0.471 5.471 19 Si 0.943 3.057 20 H -0.200 1.200 21 H -0.177 1.177 22 H -0.192 1.192 23 H 0.071 0.929 24 H 0.110 0.890 25 H 0.047 0.953 26 H 0.091 0.909 27 H 0.029 0.971 28 H 0.169 0.831 29 H 0.160 0.840 30 H 0.153 0.847 31 H 0.178 0.822 32 H 0.164 0.836 33 H 0.121 0.879 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.291 -0.970 4.415 4.701 hybrid contribution 0.638 -0.367 0.519 0.901 sum 1.929 -1.337 4.934 5.464 Atomic orbital electron populations 1.21501 0.92167 1.01900 1.01424 1.19484 0.97365 0.97329 0.87210 0.90394 1.21424 0.96028 0.97474 0.88982 1.58629 1.68152 1.06686 1.03589 1.23938 0.94727 0.90838 0.96048 1.70119 1.27247 1.13181 1.15230 1.19513 1.02260 0.95286 0.95276 1.20374 1.01050 0.95005 0.94878 1.21071 0.98466 0.99130 0.96258 1.21085 1.02030 0.92077 1.00228 1.20303 0.99955 0.98990 0.92844 1.19370 1.06658 0.90222 0.97018 1.41580 1.32201 1.08810 1.16032 1.20794 1.50325 0.88877 0.98583 0.87639 1.28234 0.99603 1.03658 0.90295 1.70765 1.16220 1.27192 1.32930 0.82827 0.73264 0.71964 0.77670 1.19953 1.17689 1.19245 0.92894 0.88950 0.95328 0.90919 0.97130 0.83098 0.84024 0.84742 0.82180 0.83598 0.87886 0.92489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.02 9.06 71.98 0.65 -3.37 16 2 C 0.01 0.27 2.86 -11.54 -0.03 0.24 16 3 H 0.08 3.10 6.96 -2.39 -0.02 3.08 16 4 C 0.09 3.06 6.15 86.30 0.53 3.59 16 5 N -0.84 -20.55 9.08 -186.72 -1.70 -22.25 16 6 C 0.21 10.18 6.34 137.76 0.87 11.05 16 7 N -0.54 -26.98 11.26 -179.55 -2.02 -29.00 16 8 C 0.00 0.01 7.23 39.42 0.28 0.30 16 9 C -0.09 -3.87 10.10 22.49 0.23 -3.65 16 10 C -0.13 -4.63 10.02 22.26 0.22 -4.40 16 11 C -0.13 -5.30 10.03 22.32 0.22 -5.08 16 12 C -0.10 -4.93 8.44 22.31 0.19 -4.74 16 13 C -0.02 -0.98 5.57 38.78 0.22 -0.76 16 14 N -0.31 -16.96 2.68 -333.12 -0.89 -17.85 16 15 C -0.46 -24.15 9.23 84.00 0.78 -23.37 16 16 H 0.11 5.24 7.36 -2.91 -0.02 5.21 16 17 C -0.01 -0.45 4.34 84.92 0.37 -0.08 16 18 N -0.84 -46.76 11.59 21.65 0.25 -46.51 16 19 Si 1.13 43.19 29.99 68.60 2.06 45.24 16 20 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 21 H -0.25 -8.67 7.11 99.48 0.71 -7.96 16 22 H -0.27 -9.75 7.11 99.48 0.71 -9.05 16 23 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 24 H 0.09 2.79 7.75 -2.39 -0.02 2.77 16 25 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 27 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.35 6.92 9.08 -89.69 -0.81 6.11 16 29 H 0.35 7.71 8.99 -89.70 -0.81 6.90 16 30 H 0.13 4.82 8.06 -2.91 -0.02 4.80 16 31 H 0.16 4.19 8.06 -2.91 -0.02 4.16 16 32 H 0.15 4.68 8.06 -2.91 -0.02 4.65 16 33 H 0.10 5.35 6.35 -2.91 -0.02 5.33 16 34 H 0.26 15.87 6.96 -92.71 -0.65 15.23 16 Total: -1.00 -65.27 285.48 1.86 -63.41 By element: Atomic # 1 Polarization: 37.60 SS G_CDS: -0.37 Total: 37.23 kcal Atomic # 6 Polarization: -34.80 SS G_CDS: 4.53 Total: -30.27 kcal Atomic # 7 Polarization: -111.25 SS G_CDS: -4.36 Total: -115.61 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.06 Total: 45.24 kcal Total: -65.27 1.86 -63.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076015227.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.805 kcal (2) G-P(sol) polarization free energy of solvation -65.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds