Wall clock time and date at job start Mon Mar 30 2020 03:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99653 * 2 1 4 4 H 1.48494 * 109.47207 * 269.99837 * 3 2 1 5 5 H 1.48502 * 109.46995 * 30.00561 * 3 2 1 6 6 H 1.48510 * 109.46693 * 150.00089 * 3 2 1 7 7 C 1.37872 * 120.00383 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99845 * 359.97438 * 7 2 1 9 9 C 1.50693 * 120.00442 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47627 * 179.97438 * 9 7 2 11 11 N 1.46497 * 109.47355 * 179.97438 * 10 9 7 12 12 C 1.36907 * 124.99236 * 265.02294 * 11 10 9 13 13 C 1.34226 * 109.92082 * 179.97438 * 12 11 10 14 14 C 1.50701 * 126.57353 * 180.02562 * 13 12 11 15 15 N 1.46894 * 109.47283 * 260.02553 * 14 13 12 16 16 C 1.46394 * 106.86128 * 0.02562 * 13 12 11 17 17 C 1.39688 * 134.31756 * 180.02562 * 16 13 12 18 18 C 1.38197 * 118.04418 * 180.02562 * 17 16 13 19 19 C 1.38668 * 119.40495 * 359.97438 * 18 17 16 20 20 N 1.31587 * 121.58680 * 0.25212 * 19 18 17 21 21 C 1.32653 * 121.67049 * 359.49012 * 20 19 18 22 22 H 0.97001 * 120.00377 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47076 * 59.99705 * 9 7 2 24 24 H 1.09004 * 109.46903 * 300.00107 * 9 7 2 25 25 H 1.09000 * 109.47013 * 59.99815 * 10 9 7 26 26 H 1.08998 * 109.46768 * 299.99946 * 10 9 7 27 27 H 1.08002 * 125.04268 * 359.97438 * 12 11 10 28 28 H 1.09000 * 109.46483 * 20.02568 * 14 13 12 29 29 H 1.08998 * 109.46698 * 140.02213 * 14 13 12 30 30 H 1.00902 * 111.00368 * 56.03772 * 15 14 13 31 31 H 1.00898 * 111.00156 * 179.97438 * 15 14 13 32 32 H 1.08003 * 120.97565 * 0.02562 * 17 16 13 33 33 H 1.07998 * 120.29933 * 180.02562 * 18 17 16 34 34 H 1.07997 * 119.20350 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0216 -2.6364 -0.0001 11 7 5.4866 -2.6364 -0.0001 12 6 6.2717 -2.7336 -1.1175 13 6 7.5678 -2.7027 -0.7699 14 6 8.7495 -2.7830 -1.7016 15 7 9.2831 -4.1516 -1.6990 16 6 7.6136 -2.5761 0.6878 17 6 8.6430 -2.4934 1.6284 18 6 8.2974 -2.3786 2.9615 19 6 6.9575 -2.3490 3.3174 20 7 6.0029 -2.4326 2.4156 21 6 6.2745 -2.5393 1.1216 22 1 -0.4851 0.8400 0.0004 23 1 3.8745 -0.6807 0.8905 24 1 3.8752 -0.6795 -0.8895 25 1 3.6587 -3.1501 -0.8903 26 1 3.6580 -3.1504 0.8897 27 1 5.9029 -2.8220 -2.1288 28 1 8.4350 -2.5176 -2.7109 29 1 9.5227 -2.0909 -1.3681 30 1 8.5669 -4.8194 -1.9423 31 1 10.0767 -4.2315 -2.3170 32 1 9.6786 -2.5186 1.3227 33 1 9.0640 -2.3117 3.7193 34 1 6.6911 -2.2596 4.3602 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085607645.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:52 Heat of formation + Delta-G solvation = 44.104712 kcal Electronic energy + Delta-G solvation = -17032.490491 eV Core-core repulsion = 14350.608714 eV Total energy + Delta-G solvation = -2681.881777 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 245.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.49115 -38.94360 -36.54063 -35.32608 -33.80638 -32.97480 -30.65447 -30.09440 -27.24839 -25.10440 -24.44984 -23.49438 -22.19254 -20.40456 -19.24711 -17.90598 -17.75745 -16.98534 -16.74085 -16.29621 -15.92436 -15.36602 -15.23404 -15.00387 -14.80161 -14.31955 -14.06419 -13.86449 -13.62487 -13.21859 -13.02983 -12.79113 -12.52235 -12.09099 -12.05900 -11.88437 -11.59666 -11.13478 -10.86991 -10.20687 -9.49568 -9.26482 -8.77876 -8.39637 -6.44932 0.17133 0.52066 1.25055 1.28838 1.40238 1.69848 1.77140 2.25979 2.95118 3.03212 3.46450 3.69014 3.82629 3.99728 4.05677 4.19551 4.31132 4.36250 4.43674 4.58242 4.60425 4.66024 4.82908 4.91949 5.07674 5.10453 5.21041 5.41103 5.45963 5.60609 5.76882 6.10595 6.22344 6.23942 6.35308 6.61030 6.74024 7.18282 7.20810 8.76398 Molecular weight = 245.12amu Principal moments of inertia in cm(-1) A = 0.024348 B = 0.006335 C = 0.005645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.716094 B = 4418.804860 C = 4958.531075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.018 3.982 3 Si 0.944 3.056 4 H -0.259 1.259 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.532 4.532 8 H 0.045 0.955 9 C -0.009 4.009 10 C 0.134 3.866 11 N -0.474 5.474 12 C 0.061 3.939 13 C -0.175 4.175 14 C 0.147 3.853 15 N -0.853 5.853 16 C -0.153 4.153 17 C -0.029 4.029 18 C -0.200 4.200 19 C 0.117 3.883 20 N -0.538 5.538 21 C 0.247 3.753 22 H 0.270 0.730 23 H 0.003 0.997 24 H 0.022 0.978 25 H 0.101 0.899 26 H 0.067 0.933 27 H 0.197 0.803 28 H 0.050 0.950 29 H 0.081 0.919 30 H 0.343 0.657 31 H 0.352 0.648 32 H 0.157 0.843 33 H 0.172 0.828 34 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.839 -5.319 -1.746 22.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.180 4.180 3 Si 0.768 3.232 4 H -0.183 1.183 5 H -0.203 1.203 6 H -0.193 1.193 7 C -0.571 4.571 8 H 0.064 0.936 9 C -0.047 4.047 10 C 0.014 3.986 11 N -0.158 5.158 12 C -0.065 4.065 13 C -0.183 4.183 14 C 0.017 3.983 15 N -0.385 5.385 16 C -0.160 4.160 17 C -0.055 4.055 18 C -0.221 4.221 19 C -0.048 4.048 20 N -0.252 5.252 21 C 0.015 3.985 22 H 0.079 0.921 23 H 0.021 0.979 24 H 0.040 0.960 25 H 0.120 0.880 26 H 0.085 0.915 27 H 0.214 0.786 28 H 0.068 0.932 29 H 0.099 0.901 30 H 0.155 0.845 31 H 0.166 0.834 32 H 0.174 0.826 33 H 0.189 0.811 34 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 20.567 -5.078 -0.824 21.200 hybrid contribution -0.148 0.728 -0.985 1.234 sum 20.419 -4.350 -1.808 20.955 Atomic orbital electron populations 1.70017 1.07882 1.28368 1.51726 1.25797 0.95510 1.02878 0.93835 0.85756 0.78834 0.79189 0.79412 1.18347 1.20263 1.19320 1.21164 0.90651 0.93837 1.51406 0.93642 1.19680 0.94942 0.93837 0.96215 1.21652 0.75015 0.98635 1.03346 1.44301 1.06568 1.60710 1.04244 1.22267 0.89906 1.02652 0.91714 1.20307 0.93976 1.12471 0.91518 1.19911 0.92370 0.91158 0.94909 1.58646 1.13089 1.04960 1.61757 1.20044 0.92683 1.07878 0.95421 1.21252 0.99083 0.93531 0.91660 1.22193 0.97555 1.05203 0.97164 1.23003 0.88813 0.94663 0.98355 1.66428 1.40624 1.17709 1.00409 1.18860 0.89176 1.02797 0.87619 0.92110 0.97897 0.96011 0.88046 0.91487 0.78627 0.93161 0.90111 0.84454 0.83356 0.82581 0.81056 0.80394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.81 13.96 21.45 0.30 -58.52 16 2 C 0.02 1.08 5.47 84.65 0.46 1.54 16 3 Si 0.94 45.93 27.47 68.60 1.88 47.82 16 4 H -0.26 -11.81 7.11 99.48 0.71 -11.11 16 5 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 6 H -0.27 -13.08 6.54 99.48 0.65 -12.43 16 7 C -0.53 -31.00 9.66 25.60 0.25 -30.75 16 8 H 0.05 2.84 7.99 -2.91 -0.02 2.82 16 9 C -0.01 -0.42 4.36 29.85 0.13 -0.29 16 10 C 0.13 5.60 5.99 86.38 0.52 6.11 16 11 N -0.47 -17.76 2.77 -521.75 -1.45 -19.21 16 12 C 0.06 1.79 11.19 82.98 0.93 2.72 16 13 C -0.17 -4.74 5.83 -18.66 -0.11 -4.85 16 14 C 0.15 2.76 7.32 85.56 0.63 3.38 16 15 N -0.85 -14.00 9.61 -190.02 -1.83 -15.83 16 16 C -0.15 -4.87 6.37 -20.18 -0.13 -4.99 16 17 C -0.03 -0.74 10.22 22.61 0.23 -0.51 16 18 C -0.20 -4.67 10.10 22.36 0.23 -4.45 16 19 C 0.12 3.44 11.14 84.83 0.95 4.39 16 20 N -0.54 -21.11 10.39 -192.73 -2.00 -23.11 16 21 C 0.25 9.54 7.91 133.93 1.06 10.60 16 22 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 23 H 0.00 0.14 7.20 -2.39 -0.02 0.13 16 24 H 0.02 1.04 7.57 -2.39 -0.02 1.02 16 25 H 0.10 3.76 8.12 -2.39 -0.02 3.74 16 26 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 27 H 0.20 4.33 8.06 -2.91 -0.02 4.31 16 28 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.34 5.52 8.99 -89.69 -0.81 4.71 16 31 H 0.35 3.96 9.08 -89.70 -0.81 3.14 16 32 H 0.16 3.03 8.06 -2.91 -0.02 3.01 16 33 H 0.17 2.50 8.06 -2.91 -0.02 2.48 16 34 H 0.18 4.00 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -73.92 294.42 1.49 -72.43 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -0.56 Total: 13.51 kcal Atomic # 6 Polarization: -22.22 SS G_CDS: 5.14 Total: -17.09 kcal Atomic # 7 Polarization: -111.69 SS G_CDS: -4.97 Total: -116.66 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 1.88 Total: 47.82 kcal Total: -73.92 1.49 -72.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085607645.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.531 kcal (2) G-P(sol) polarization free energy of solvation -73.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds