Wall clock time and date at job start Mon Mar 30 2020 04:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46512 * 109.47033 * 2 1 4 4 C 1.46491 * 119.99962 * 90.00019 * 3 2 1 5 5 C 1.50702 * 109.46957 * 269.99883 * 4 3 2 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 3 7 7 C 1.37884 * 119.99942 * 179.72213 * 5 4 3 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 4 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 4 10 10 H 1.48496 * 109.47341 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46983 * 120.00379 * 9 7 5 12 12 H 1.48503 * 109.47491 * 240.00192 * 9 7 5 13 13 C 1.39196 * 119.99737 * 270.00142 * 3 2 1 14 14 C 1.39357 * 119.86659 * 179.72607 * 13 3 2 15 15 C 1.36526 * 120.39662 * 179.71623 * 14 13 3 16 16 C 1.39875 * 120.11844 * 0.55362 * 15 14 13 17 17 C 1.43201 * 120.13298 * 179.69756 * 16 15 14 18 18 N 7.57863 * 102.35236 * 308.30023 * 2 1 3 19 19 C 1.40566 * 119.73405 * 359.72296 * 16 15 14 20 20 N 1.39040 * 120.19596 * 180.02562 * 19 16 15 21 21 C 1.38616 * 119.60897 * 0.02562 * 19 16 15 22 22 H 1.09003 * 109.47524 * 60.00120 * 1 2 3 23 23 H 1.09007 * 109.47128 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47311 * 300.00158 * 1 2 3 25 25 H 1.09002 * 109.47453 * 240.00375 * 2 1 3 26 26 H 1.09003 * 109.47524 * 119.99880 * 2 1 3 27 27 H 1.09004 * 109.47166 * 150.00149 * 4 3 2 28 28 H 1.08994 * 109.47507 * 29.99855 * 4 3 2 29 29 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 30 30 H 1.08006 * 119.80363 * 359.97438 * 14 13 3 31 31 H 1.07998 * 119.94318 * 180.27736 * 15 14 13 32 32 H 0.96995 * 120.00088 * 179.97438 * 20 19 16 33 33 H 0.97002 * 120.00028 * 359.97438 * 20 19 16 34 34 H 1.07996 * 120.05996 * 180.02562 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 1.2687 5 6 1.0065 2.7823 1.7037 6 1 0.1155 2.7248 1.0961 7 6 0.9932 3.5006 2.8805 8 7 2.0781 3.5703 3.6206 9 14 -0.5657 4.3748 3.4235 10 1 -1.6379 4.1420 2.4229 11 1 -0.9965 3.8450 4.7423 12 1 -0.3022 5.8318 3.5375 13 6 2.2502 2.0375 -1.2055 14 6 2.7092 3.3533 -1.2023 15 6 2.9458 4.0052 -2.3783 16 6 2.7173 3.3587 -3.5975 17 6 2.9592 4.0445 -4.8312 18 7 3.1512 4.5884 -5.8098 19 6 2.2489 2.0335 -3.6069 20 7 2.0190 1.3815 -4.8132 21 6 2.0174 1.3804 -2.4063 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.0643 2.7986 1.1383 28 1 2.5505 1.3453 2.0283 29 1 2.0689 4.0760 4.4484 30 1 2.8829 3.8590 -0.2639 31 1 3.3058 5.0234 -2.3673 32 1 1.6961 0.4669 -4.8164 33 1 2.1816 1.8414 -5.6517 34 1 1.6578 0.3621 -2.4050 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087099627.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:36 Heat of formation + Delta-G solvation = 36.279865 kcal Electronic energy + Delta-G solvation = -17094.383154 eV Core-core repulsion = 14412.162067 eV Total energy + Delta-G solvation = -2682.221088 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 245.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.74111 -38.38408 -36.85962 -35.19943 -34.76828 -32.01347 -31.30043 -29.30151 -28.34797 -24.92822 -24.66816 -22.63258 -21.72931 -19.58866 -18.54274 -18.06350 -17.79363 -16.63356 -16.39237 -15.75442 -15.23424 -14.93508 -14.76092 -14.66191 -14.52216 -14.06059 -13.72700 -13.53560 -13.39181 -13.17555 -13.01860 -12.71648 -12.57857 -12.54870 -12.13401 -11.89927 -11.84262 -11.42875 -11.32250 -10.54680 -10.35008 -8.61342 -8.27637 -7.85760 -6.26110 0.36702 0.90847 1.40907 1.44809 1.54525 1.82099 2.22007 2.39257 2.55465 3.02123 3.16304 3.25391 3.29763 4.05131 4.23555 4.56232 4.60238 4.65836 4.67861 4.74901 4.90873 5.06945 5.11973 5.18419 5.29899 5.32626 5.56597 5.62835 5.71090 5.78618 5.84678 6.15955 6.52311 6.53764 6.70060 6.87804 6.92638 7.00901 7.44448 8.91482 Molecular weight = 245.12amu Principal moments of inertia in cm(-1) A = 0.024053 B = 0.006474 C = 0.005651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.814656 B = 4323.642521 C = 4953.601043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.115 3.885 3 N -0.603 5.603 4 C 0.259 3.741 5 C -0.527 4.527 6 H 0.056 0.944 7 C 0.015 3.985 8 N -0.927 5.927 9 Si 0.952 3.048 10 H -0.270 1.270 11 H -0.280 1.280 12 H -0.282 1.282 13 C 0.293 3.707 14 C -0.254 4.254 15 C 0.021 3.979 16 C -0.210 4.210 17 C 0.296 3.704 18 N -0.500 5.500 19 C 0.318 3.682 20 N -0.854 5.854 21 C -0.295 4.295 22 H 0.051 0.949 23 H 0.082 0.918 24 H 0.038 0.962 25 H 0.096 0.904 26 H 0.068 0.932 27 H 0.021 0.979 28 H 0.014 0.986 29 H 0.264 0.736 30 H 0.111 0.889 31 H 0.133 0.867 32 H 0.414 0.586 33 H 0.399 0.601 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.387 -8.078 -10.309 13.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.008 4.008 3 N -0.305 5.305 4 C 0.138 3.862 5 C -0.566 4.566 6 H 0.074 0.926 7 C -0.184 4.184 8 N -0.567 5.567 9 Si 0.778 3.222 10 H -0.194 1.194 11 H -0.206 1.206 12 H -0.208 1.208 13 C 0.181 3.819 14 C -0.277 4.277 15 C -0.001 4.001 16 C -0.222 4.222 17 C -0.015 4.015 18 N -0.179 5.179 19 C 0.205 3.795 20 N -0.392 5.392 21 C -0.324 4.324 22 H 0.070 0.930 23 H 0.101 0.899 24 H 0.057 0.943 25 H 0.114 0.886 26 H 0.087 0.913 27 H 0.039 0.961 28 H 0.032 0.968 29 H 0.073 0.927 30 H 0.129 0.871 31 H 0.151 0.849 32 H 0.246 0.754 33 H 0.228 0.772 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -1.065 -7.308 -11.398 13.581 hybrid contribution -0.773 0.482 1.021 1.368 sum -1.839 -6.827 -10.377 12.556 Atomic orbital electron populations 1.22132 0.96132 1.02170 1.01582 1.21562 0.94599 0.81726 1.02898 1.47201 1.66074 1.13422 1.03788 1.18947 0.95525 0.91708 0.80061 1.21791 0.98299 1.30589 1.05890 0.92606 1.25651 0.98872 0.97211 0.96690 1.70030 1.29184 1.42744 1.14770 0.85597 0.80219 0.78309 0.78086 1.19393 1.20608 1.20828 1.18008 0.87052 0.90735 0.86092 1.20298 1.13535 0.95457 0.98441 1.20363 0.91801 0.98552 0.89415 1.15252 1.25478 0.94704 0.86753 1.25712 0.91150 0.92337 0.92341 1.81202 1.14453 1.09969 1.12228 1.17160 0.87037 0.88377 0.86876 1.42361 1.74434 1.18042 1.04347 1.19894 1.21451 1.02662 0.88355 0.92997 0.89922 0.94312 0.88561 0.91316 0.96141 0.96797 0.92664 0.87107 0.84872 0.75429 0.77195 0.83472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.53 10.24 71.98 0.74 -3.80 16 2 C 0.11 3.32 5.91 86.37 0.51 3.83 16 3 N -0.60 -22.35 2.58 -701.73 -1.81 -24.16 16 4 C 0.26 12.11 4.93 85.64 0.42 12.53 16 5 C -0.53 -26.97 8.92 25.60 0.23 -26.74 16 6 H 0.06 2.89 7.42 -2.91 -0.02 2.87 16 7 C 0.01 0.78 5.46 84.66 0.46 1.24 16 8 N -0.93 -51.77 13.29 21.45 0.28 -51.49 16 9 Si 0.95 42.25 29.54 68.60 2.03 44.27 16 10 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 11 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 12 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 13 C 0.29 10.10 6.55 38.39 0.25 10.35 16 14 C -0.25 -9.20 9.13 22.14 0.20 -8.99 16 15 C 0.02 0.64 9.69 22.27 0.22 0.85 16 16 C -0.21 -6.04 5.77 -21.07 -0.12 -6.17 16 17 C 0.30 8.75 14.09 88.33 1.24 9.99 16 18 N -0.50 -16.16 18.54 19.00 0.35 -15.81 16 19 C 0.32 8.06 6.76 38.66 0.26 8.32 16 20 N -0.85 -15.42 8.99 -50.91 -0.46 -15.87 16 21 C -0.30 -8.01 9.03 22.51 0.20 -7.80 16 22 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 23 H 0.08 1.75 8.14 -2.38 -0.02 1.74 16 24 H 0.04 1.35 7.26 -2.39 -0.02 1.33 16 25 H 0.10 2.15 6.17 -2.39 -0.01 2.13 16 26 H 0.07 2.00 7.89 -2.39 -0.02 1.98 16 27 H 0.02 1.04 6.18 -2.38 -0.01 1.03 16 28 H 0.01 0.70 7.89 -2.39 -0.02 0.68 16 29 H 0.26 14.04 8.31 -92.70 -0.77 13.27 16 30 H 0.11 4.64 6.10 -2.91 -0.02 4.62 16 31 H 0.13 3.67 8.06 -2.91 -0.02 3.65 16 32 H 0.41 5.15 8.84 -92.71 -0.82 4.33 16 33 H 0.40 7.08 7.69 -92.71 -0.71 6.37 16 34 H 0.15 3.23 6.11 -2.91 -0.02 3.21 16 Total: -1.00 -59.65 294.93 4.63 -55.02 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -0.39 Total: 14.40 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: 4.62 Total: -6.37 kcal Atomic # 7 Polarization: -105.69 SS G_CDS: -1.63 Total: -107.32 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.27 kcal Total: -59.65 4.63 -55.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087099627.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.302 kcal (2) G-P(sol) polarization free energy of solvation -59.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds