Wall clock time and date at job start Mon Mar 30 2020 03:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30108 * 124.95126 * 2 1 4 4 C 1.35779 * 109.64871 * 179.97438 * 3 2 1 5 5 C 1.39743 * 133.60643 * 180.02562 * 4 3 2 6 6 C 1.36609 * 119.88384 * 179.66827 * 5 4 3 7 7 C 1.50704 * 119.66034 * 180.30678 * 6 5 4 8 8 N 1.46493 * 109.47421 * 270.27573 * 7 6 5 9 9 C 1.46501 * 120.00220 * 90.00352 * 8 7 6 10 10 C 1.36939 * 120.00194 * 270.00355 * 8 7 6 11 11 H 1.07996 * 120.00151 * 141.97418 * 10 8 7 12 12 C 1.38815 * 119.99906 * 321.97421 * 10 8 7 13 13 N 1.31618 * 119.99796 * 157.13220 * 12 10 8 14 14 Si 1.86793 * 119.99949 * 337.12971 * 12 10 8 15 15 H 1.48511 * 109.46992 * 95.67444 * 14 12 10 16 16 H 1.48494 * 109.47381 * 215.67217 * 14 12 10 17 17 H 1.48498 * 109.47326 * 335.67766 * 14 12 10 18 18 C 1.38768 * 120.67295 * 0.58920 * 6 5 4 19 19 C 1.37862 * 120.44913 * 359.42115 * 18 6 5 20 20 C 1.38837 * 119.68614 * 0.27844 * 19 18 6 21 21 N 1.36037 * 124.95187 * 179.97438 * 2 1 3 22 22 H 0.97000 * 126.35051 * 0.04773 * 21 2 1 23 23 H 1.09005 * 109.47265 * 89.97703 * 1 2 3 24 24 H 1.08999 * 109.47468 * 209.97607 * 1 2 3 25 25 H 1.09002 * 109.47568 * 329.98040 * 1 2 3 26 26 H 1.07998 * 120.05787 * 359.97438 * 5 4 3 27 27 H 1.09003 * 109.47140 * 30.28070 * 7 6 5 28 28 H 1.09005 * 109.46720 * 150.27583 * 7 6 5 29 29 H 1.08996 * 109.47166 * 85.62775 * 9 8 7 30 30 H 1.08991 * 109.47702 * 205.63307 * 9 8 7 31 31 H 1.09003 * 109.46691 * 325.62998 * 9 8 7 32 32 H 0.97003 * 120.00079 * 180.02562 * 13 12 10 33 33 H 1.07995 * 119.77979 * 179.70087 * 18 6 5 34 34 H 1.07998 * 120.15372 * 180.25174 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2523 1.0664 0.0000 4 6 3.5619 0.7081 0.0006 5 6 4.7586 1.4297 0.0013 6 6 5.9531 0.7669 0.0086 7 6 7.2406 1.5502 0.0163 8 7 7.6628 1.8096 -1.3623 9 6 7.2145 3.0232 -2.0496 10 6 8.4764 0.9176 -2.0085 11 1 8.3263 0.7121 -3.0581 12 6 9.4942 0.2777 -1.3146 13 7 9.9748 -0.8650 -1.7569 14 14 10.1815 1.0382 0.2469 15 1 9.5040 0.4434 1.4270 16 1 11.6401 0.7713 0.3270 17 1 9.9468 2.5044 0.2283 18 6 5.9931 -0.6202 0.0031 19 6 4.8252 -1.3528 0.0021 20 6 3.6018 -0.6964 0.0008 21 7 2.2863 -1.1150 0.0005 22 1 1.9753 -2.0338 0.0003 23 1 -0.3634 0.0004 -1.0277 24 1 -0.3634 -0.8902 0.5134 25 1 -0.3634 0.8898 0.5141 26 1 4.7391 2.5095 0.0010 27 1 7.0866 2.4973 0.5335 28 1 8.0117 0.9766 0.5307 29 1 7.8875 3.8463 -1.8096 30 1 7.2177 2.8533 -3.1262 31 1 6.2046 3.2729 -1.7243 32 1 10.6858 -1.3124 -1.2718 33 1 6.9455 -1.1294 0.0041 34 1 4.8619 -2.4321 0.0020 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258758058.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:42 Heat of formation + Delta-G solvation = 71.686008 kcal Electronic energy + Delta-G solvation = -17309.512146 eV Core-core repulsion = 14628.826384 eV Total energy + Delta-G solvation = -2680.685762 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 245.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.04305 -39.20482 -36.95496 -34.15944 -33.74070 -32.38106 -31.21172 -29.34155 -27.96053 -26.76693 -23.40132 -23.17215 -22.51504 -21.54464 -18.92122 -18.74356 -17.88604 -17.03385 -16.45965 -16.23195 -15.75124 -15.27392 -14.95412 -14.76237 -14.63415 -14.03585 -13.84825 -13.79497 -13.40576 -13.24161 -12.74004 -12.65675 -12.58608 -12.31511 -12.11933 -11.91511 -11.65572 -11.57293 -10.96684 -10.63703 -9.19171 -9.05130 -8.76935 -8.18577 -5.56315 0.05295 0.54303 1.32428 1.43393 1.54762 1.83223 1.98508 2.43531 2.81434 3.13766 3.21968 3.58943 3.69489 4.07381 4.22306 4.25496 4.32778 4.46568 4.60444 4.70829 4.73493 4.75018 4.79708 4.87327 5.05947 5.07753 5.11315 5.19571 5.45177 5.54710 5.81090 5.92293 5.98509 6.18165 6.54131 6.93787 6.97699 7.61997 8.06167 9.00824 Molecular weight = 245.12amu Principal moments of inertia in cm(-1) A = 0.037156 B = 0.006284 C = 0.005883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.398732 B = 4454.468877 C = 4758.714283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.285 3.715 3 N -0.536 5.536 4 C 0.024 3.976 5 C -0.074 4.074 6 C -0.096 4.096 7 C 0.170 3.830 8 N -0.617 5.617 9 C 0.123 3.877 10 C -0.259 4.259 11 H 0.036 0.964 12 C -0.008 4.008 13 N -0.941 5.941 14 Si 0.933 3.067 15 H -0.270 1.270 16 H -0.305 1.305 17 H -0.260 1.260 18 C -0.093 4.093 19 C -0.111 4.111 20 C 0.031 3.969 21 N -0.588 5.588 22 H 0.438 0.562 23 H 0.103 0.897 24 H 0.110 0.890 25 H 0.099 0.901 26 H 0.128 0.872 27 H 0.075 0.925 28 H 0.046 0.954 29 H 0.023 0.977 30 H 0.038 0.962 31 H 0.052 0.948 32 H 0.264 0.736 33 H 0.111 0.889 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.653 -0.454 6.669 19.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.017 3.983 3 N -0.259 5.259 4 C -0.093 4.093 5 C -0.095 4.095 6 C -0.101 4.101 7 C 0.045 3.955 8 N -0.341 5.341 9 C -0.021 4.021 10 C -0.389 4.389 11 H 0.054 0.946 12 C -0.205 4.205 13 N -0.585 5.585 14 Si 0.761 3.239 15 H -0.196 1.196 16 H -0.233 1.233 17 H -0.184 1.184 18 C -0.113 4.113 19 C -0.132 4.132 20 C -0.079 4.079 21 N -0.202 5.202 22 H 0.280 0.720 23 H 0.121 0.879 24 H 0.129 0.871 25 H 0.118 0.882 26 H 0.145 0.855 27 H 0.093 0.907 28 H 0.064 0.936 29 H 0.041 0.959 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.129 0.871 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -18.778 0.355 6.656 19.926 hybrid contribution 1.216 -1.237 0.276 1.756 sum -17.562 -0.882 6.932 18.901 Atomic orbital electron populations 1.20596 0.80419 1.06263 1.05645 1.24562 0.97394 0.80363 0.95939 1.70341 1.00816 1.29583 1.25123 1.19225 0.92270 0.91424 1.06367 1.19814 0.88593 0.99552 1.01521 1.20246 0.95944 0.94498 0.99411 1.20257 0.91272 0.97425 0.86506 1.44163 1.55464 1.21956 1.12482 1.21178 0.97441 0.87209 0.96262 1.18598 1.07881 1.17472 0.94962 0.94638 1.25946 0.96956 0.96342 1.01275 1.70003 1.29780 1.15523 1.43187 0.86015 0.76458 0.80622 0.80806 1.19645 1.23345 1.18393 1.20871 0.97516 0.93935 0.99007 1.20050 0.88374 1.00208 1.04560 1.18873 0.86435 0.95048 1.07573 1.42906 1.03429 1.10682 1.63230 0.72003 0.87863 0.87127 0.88244 0.85457 0.90723 0.93625 0.95912 0.94300 0.92964 0.92703 0.87130 0.83883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.78 10.51 71.23 0.75 -0.03 16 2 C 0.28 6.70 8.08 137.92 1.11 7.81 16 3 N -0.54 -17.70 11.27 -179.98 -2.03 -19.73 16 4 C 0.02 0.89 7.23 39.45 0.29 1.18 16 5 C -0.07 -2.86 9.67 22.25 0.22 -2.64 16 6 C -0.10 -4.00 5.43 -20.12 -0.11 -4.11 16 7 C 0.17 7.49 4.63 85.64 0.40 7.89 16 8 N -0.62 -30.16 2.45 -731.32 -1.79 -31.96 16 9 C 0.12 5.06 10.70 127.77 1.37 6.43 16 10 C -0.26 -14.97 9.88 84.03 0.83 -14.14 16 11 H 0.04 2.30 8.06 -2.91 -0.02 2.28 16 12 C -0.01 -0.46 5.29 84.86 0.45 -0.01 16 13 N -0.94 -58.10 13.97 21.65 0.30 -57.80 16 14 Si 0.93 45.79 25.10 68.60 1.72 47.52 16 15 H -0.27 -12.52 6.68 99.48 0.66 -11.86 16 16 H -0.31 -15.09 7.11 99.48 0.71 -14.38 16 17 H -0.26 -12.30 7.11 99.48 0.71 -11.59 16 18 C -0.09 -3.84 9.67 22.31 0.22 -3.62 16 19 C -0.11 -3.80 10.07 22.32 0.22 -3.58 16 20 C 0.03 1.00 7.30 38.86 0.28 1.28 16 21 N -0.59 -13.50 6.23 -179.23 -1.12 -14.62 16 22 H 0.44 6.17 8.96 -92.71 -0.83 5.34 16 23 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 24 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 25 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.13 4.55 8.02 -2.91 -0.02 4.53 16 27 H 0.07 2.87 8.01 -2.39 -0.02 2.85 16 28 H 0.05 2.15 3.32 -2.38 -0.01 2.14 16 29 H 0.02 0.87 8.14 -2.39 -0.02 0.86 16 30 H 0.04 1.61 8.00 -2.39 -0.02 1.59 16 31 H 0.05 1.88 8.06 -2.39 -0.02 1.86 16 32 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 33 H 0.11 5.00 8.06 -2.91 -0.02 4.98 16 34 H 0.14 3.99 8.06 -2.91 -0.02 3.96 16 Total: -1.00 -73.95 287.79 3.35 -70.60 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: 0.24 Total: 9.54 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: 6.02 Total: -3.55 kcal Atomic # 7 Polarization: -119.47 SS G_CDS: -4.64 Total: -124.11 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 1.72 Total: 47.52 kcal Total: -73.95 3.35 -70.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258758058.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.288 kcal (2) G-P(sol) polarization free energy of solvation -73.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds