Wall clock time and date at job start Mon Mar 30 2020 03:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.33398 * 126.27304 * 2 1 4 4 C 1.30897 * 109.87385 * 180.02562 * 3 2 1 5 5 C 1.50702 * 125.31966 * 180.02562 * 4 3 2 6 6 N 1.35038 * 109.37136 * 0.02562 * 4 3 2 7 7 C 1.37070 * 133.11927 * 180.02562 * 6 4 3 8 8 C 1.34663 * 120.55558 * 180.23099 * 7 6 4 9 9 C 1.40815 * 120.62265 * 359.56400 * 8 7 6 10 10 C 1.50701 * 120.11670 * 180.21913 * 9 8 7 11 11 H 1.09005 * 109.46882 * 200.16867 * 10 9 8 12 12 N 1.46899 * 109.47089 * 320.17264 * 10 9 8 13 13 C 1.50696 * 109.46957 * 80.17285 * 10 9 8 14 14 H 1.08004 * 119.99902 * 0.02562 * 13 10 9 15 15 C 1.37878 * 119.99919 * 179.97438 * 13 10 9 16 16 N 1.31518 * 120.00053 * 180.02562 * 15 13 10 17 17 Si 1.86799 * 120.00113 * 0.02562 * 15 13 10 18 18 H 1.48497 * 109.47090 * 89.99649 * 17 15 13 19 19 H 1.48496 * 109.47228 * 210.00044 * 17 15 13 20 20 H 1.48498 * 109.46873 * 330.00126 * 17 15 13 21 21 C 1.35880 * 119.76700 * 0.39150 * 9 8 7 22 22 C 1.37994 * 126.26713 * 180.02562 * 2 1 3 23 23 H 1.09005 * 109.47303 * 89.97219 * 1 2 3 24 24 H 1.08998 * 109.47313 * 209.97224 * 1 2 3 25 25 H 1.09002 * 109.46773 * 329.97335 * 1 2 3 26 26 H 1.08999 * 109.47083 * 269.97749 * 5 4 3 27 27 H 1.09003 * 109.46602 * 29.97427 * 5 4 3 28 28 H 1.08998 * 109.47759 * 149.97474 * 5 4 3 29 29 H 1.08002 * 119.71844 * 359.94520 * 7 6 4 30 30 H 1.08001 * 119.69248 * 179.74270 * 8 7 6 31 31 H 1.00890 * 111.00099 * 59.99850 * 12 10 9 32 32 H 1.00903 * 110.99705 * 183.96021 * 12 10 9 33 33 H 0.96997 * 120.00112 * 180.02562 * 16 15 13 34 34 H 1.07999 * 120.41066 * 179.80368 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2962 1.0755 0.0000 4 6 3.5519 0.7059 -0.0006 5 6 4.7349 1.6395 -0.0002 6 7 3.6219 -0.6426 -0.0015 7 6 4.6697 -1.5264 -0.0019 8 6 4.4453 -2.8542 -0.0076 9 6 3.1310 -3.3596 -0.0040 10 6 2.8930 -4.8477 -0.0054 11 1 1.8819 -5.0536 -0.3567 12 7 3.8631 -5.4978 -0.8967 13 6 3.0578 -5.3841 1.3932 14 1 3.3093 -4.7142 2.2023 15 6 2.8866 -6.7297 1.6401 16 7 3.0299 -7.1977 2.8608 17 14 2.4510 -7.8880 0.2409 18 1 3.6969 -8.4128 -0.3734 19 1 1.6442 -9.0183 0.7669 20 1 1.6655 -7.1536 -0.7833 21 6 2.0780 -2.5008 -0.0028 22 6 2.3233 -1.1126 -0.0005 23 1 -0.3634 0.0005 -1.0277 24 1 -0.3634 -0.8902 0.5134 25 1 -0.3633 0.8898 0.5143 26 1 5.0201 1.8650 -1.0277 27 1 4.4686 2.5631 0.5140 28 1 5.5715 1.1659 0.5135 29 1 5.6837 -1.1546 -0.0023 30 1 5.2812 -3.5380 -0.0120 31 1 4.8086 -5.3217 -0.5920 32 1 3.6837 -6.4884 -0.9652 33 1 2.9098 -8.1445 3.0344 34 1 1.0657 -2.8770 -0.0032 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260029958.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:39 Heat of formation + Delta-G solvation = 79.982387 kcal Electronic energy + Delta-G solvation = -17300.843182 eV Core-core repulsion = 14620.517178 eV Total energy + Delta-G solvation = -2680.326004 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 245.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.42599 -37.71620 -35.03492 -33.44819 -31.99356 -30.60847 -30.05470 -29.01295 -26.59443 -24.82240 -23.34791 -21.98873 -20.57163 -19.74480 -17.30142 -16.79171 -15.91945 -15.85156 -15.71896 -14.62164 -14.40790 -13.95856 -13.51031 -13.11003 -12.90776 -12.84331 -12.70526 -12.43271 -12.22242 -11.97880 -11.86158 -11.28487 -11.15964 -10.90870 -10.75354 -10.26604 -9.90245 -9.78327 -9.65833 -8.88650 -8.77497 -7.75062 -6.80434 -6.33761 -4.39085 1.30598 1.72977 2.97287 3.04898 3.19869 3.20890 3.29680 3.93775 4.13193 4.56066 4.76689 4.94162 4.97615 5.21994 5.24573 5.46683 5.52276 5.60022 5.64249 5.81311 5.85104 5.92754 5.93280 6.10908 6.22964 6.36474 6.53672 6.59910 6.93174 7.07646 7.15691 7.35119 7.58460 7.91545 8.12824 8.25817 8.34659 8.72133 9.24069 10.78511 Molecular weight = 245.12amu Principal moments of inertia in cm(-1) A = 0.033797 B = 0.006198 C = 0.005759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.275303 B = 4516.535296 C = 4860.476136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C -0.020 4.020 3 N -0.452 5.452 4 C 0.136 3.864 5 C -0.056 4.056 6 N -0.359 5.359 7 C 0.022 3.978 8 C -0.093 4.093 9 C -0.020 4.020 10 C 0.210 3.790 11 H 0.054 0.946 12 N -0.848 5.848 13 C -0.550 4.550 14 H 0.076 0.924 15 C 0.075 3.925 16 N -0.886 5.886 17 Si 0.873 3.127 18 H -0.274 1.274 19 H -0.289 1.289 20 H -0.258 1.258 21 C -0.099 4.099 22 C 0.026 3.974 23 H 0.063 0.937 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.068 0.932 29 H 0.157 0.843 30 H 0.146 0.854 31 H 0.330 0.670 32 H 0.320 0.680 33 H 0.268 0.732 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.172 10.532 -6.540 12.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.155 4.155 3 N -0.168 5.168 4 C -0.118 4.118 5 C -0.114 4.114 6 N -0.030 5.030 7 C -0.098 4.098 8 C -0.114 4.114 9 C -0.023 4.023 10 C 0.101 3.899 11 H 0.072 0.928 12 N -0.382 5.382 13 C -0.589 4.589 14 H 0.094 0.906 15 C -0.129 4.129 16 N -0.523 5.523 17 Si 0.701 3.299 18 H -0.201 1.201 19 H -0.216 1.216 20 H -0.183 1.183 21 C -0.119 4.119 22 C -0.084 4.084 23 H 0.082 0.918 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.091 0.909 27 H 0.104 0.896 28 H 0.087 0.913 29 H 0.175 0.825 30 H 0.164 0.836 31 H 0.142 0.858 32 H 0.136 0.864 33 H 0.078 0.922 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.717 11.761 -6.990 13.789 hybrid contribution 0.491 -2.258 0.403 2.345 sum 2.208 9.504 -6.587 11.772 Atomic orbital electron populations 1.19909 0.87288 1.02455 1.01783 1.20730 0.95962 0.86501 1.12268 1.69701 0.99478 1.30470 1.17171 1.22842 0.95102 0.79896 1.13916 1.20020 0.91596 0.96980 1.02829 1.42591 1.06887 1.07006 1.46564 1.21455 0.91498 0.89601 1.07226 1.20754 0.98757 0.92929 0.98938 1.19929 0.91572 0.97124 0.93682 1.18466 0.93396 0.86038 0.91968 0.92792 1.59719 1.07172 1.15483 1.55849 1.21567 1.49792 0.94069 0.93518 0.90572 1.25025 0.94080 0.98157 0.95652 1.69888 1.48076 1.14659 1.19648 0.87009 0.79227 0.81068 0.82566 1.20066 1.21584 1.18287 1.20248 1.00368 0.88150 1.03102 1.19450 0.83717 0.94948 1.10236 0.91814 0.91267 0.91478 0.90881 0.89575 0.91288 0.82521 0.83641 0.85765 0.86382 0.92212 0.84156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.79 10.44 36.00 0.38 -0.41 16 2 C -0.02 -0.35 7.21 -82.00 -0.59 -0.94 16 3 N -0.45 -8.15 11.19 -6.40 -0.07 -8.22 16 4 C 0.14 2.22 7.96 -155.09 -1.23 0.98 16 5 C -0.06 -0.62 10.33 36.01 0.37 -0.25 16 6 N -0.36 -6.19 2.94 -58.16 -0.17 -6.37 16 7 C 0.02 0.33 10.80 -16.48 -0.18 0.16 16 8 C -0.09 -1.59 9.24 -39.87 -0.37 -1.96 16 9 C -0.02 -0.39 4.89 -104.49 -0.51 -0.90 16 10 C 0.21 4.66 2.48 -70.02 -0.17 4.48 16 11 H 0.05 1.24 7.05 -51.93 -0.37 0.87 16 12 N -0.85 -17.28 8.98 -6.65 -0.06 -17.34 16 13 C -0.55 -14.40 9.29 -34.44 -0.32 -14.72 16 14 H 0.08 2.22 7.98 -52.48 -0.42 1.81 16 15 C 0.08 2.02 5.47 -17.82 -0.10 1.93 16 16 N -0.89 -25.64 13.96 55.43 0.77 -24.87 16 17 Si 0.87 19.91 24.61 -169.99 -4.18 15.72 16 18 H -0.27 -5.98 7.01 56.52 0.40 -5.58 16 19 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.26 -5.71 6.54 56.52 0.37 -5.34 16 21 C -0.10 -1.88 9.71 -39.39 -0.38 -2.26 16 22 C 0.03 0.49 6.74 -84.09 -0.57 -0.08 16 23 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.07 0.64 8.04 -51.93 -0.42 0.23 16 29 H 0.16 1.76 7.98 -52.49 -0.42 1.34 16 30 H 0.15 2.26 6.70 -52.49 -0.35 1.90 16 31 H 0.33 6.20 7.35 -39.30 -0.29 5.92 16 32 H 0.32 6.70 4.30 -39.29 -0.17 6.53 16 33 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 34 H 0.14 2.47 8.03 -52.49 -0.42 2.05 16 LS Contribution 283.36 15.07 4.27 4.27 Total: -1.00 -31.12 283.36 -7.26 -38.38 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -4.14 Total: 12.39 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: -3.68 Total: -13.96 kcal Atomic # 7 Polarization: -57.27 SS G_CDS: 0.47 Total: -56.80 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -4.18 Total: 15.72 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -31.12 -7.26 -38.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260029958.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.359 kcal (2) G-P(sol) polarization free energy of solvation -31.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds