Wall clock time and date at job start Mon Mar 30 2020 03:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30899 * 125.31356 * 2 1 4 4 C 1.33402 * 109.87084 * 180.02562 * 3 2 1 5 5 C 1.37988 * 107.45810 * 359.97438 * 4 3 2 6 6 C 1.40976 * 133.70830 * 180.02562 * 5 4 3 7 7 C 1.35880 * 119.17398 * 179.97438 * 6 5 4 8 8 C 1.50700 * 120.11239 * 179.97438 * 7 6 5 9 9 H 1.09008 * 109.47175 * 359.97438 * 8 7 6 10 10 C 1.50696 * 109.47360 * 240.00311 * 8 7 6 11 11 H 1.08009 * 119.99887 * 295.10302 * 10 8 7 12 12 C 1.37871 * 120.00677 * 115.37860 * 10 8 7 13 13 N 1.31515 * 120.00590 * 173.12417 * 12 10 8 14 14 Si 1.86806 * 119.99589 * 353.12813 * 12 10 8 15 15 H 1.48498 * 109.47533 * 85.71016 * 14 12 10 16 16 H 1.48507 * 109.46975 * 205.71032 * 14 12 10 17 17 H 1.48504 * 109.46902 * 325.70882 * 14 12 10 18 18 C 1.52999 * 109.46962 * 120.00165 * 8 7 6 19 19 N 1.46907 * 109.46889 * 184.88285 * 18 8 7 20 20 C 1.40810 * 119.77559 * 0.27241 * 7 6 5 21 21 C 1.34674 * 120.61525 * 359.45389 * 20 7 6 22 22 N 1.35030 * 125.31517 * 180.02562 * 2 1 3 23 23 H 1.09000 * 109.47540 * 270.00015 * 1 2 3 24 24 H 1.08999 * 109.47327 * 30.00120 * 1 2 3 25 25 H 1.09004 * 109.47424 * 150.00226 * 1 2 3 26 26 H 1.08003 * 126.26963 * 179.97438 * 4 3 2 27 27 H 1.08000 * 120.41312 * 0.02562 * 6 5 4 28 28 H 0.97001 * 120.00002 * 180.02562 * 13 12 10 29 29 H 1.09003 * 109.47126 * 304.87838 * 18 8 7 30 30 H 1.08991 * 109.47371 * 64.88126 * 18 8 7 31 31 H 1.00900 * 110.99884 * 178.05301 * 19 18 8 32 32 H 1.00898 * 110.99630 * 302.00176 * 19 18 8 33 33 H 1.08003 * 119.69233 * 179.70088 * 20 7 6 34 34 H 1.08000 * 119.72133 * 180.28800 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2637 1.0681 0.0000 4 6 3.5495 0.7129 -0.0006 5 6 3.5981 -0.6661 -0.0003 6 6 4.6507 -1.6038 -0.0002 7 6 4.3562 -2.9303 0.0005 8 6 5.4649 -3.9510 0.0001 9 1 6.4284 -3.4409 -0.0013 10 6 5.3525 -4.8143 -1.2300 11 1 4.4956 -5.4585 -1.3611 12 6 6.3462 -4.7861 -2.1853 13 7 6.3173 -5.6348 -3.1895 14 14 7.7338 -3.5424 -2.0531 15 1 8.8053 -4.0869 -1.1810 16 1 8.2858 -3.2712 -3.4048 17 1 7.2133 -2.2804 -1.4686 18 6 5.3526 -4.8265 1.2497 19 7 6.4986 -5.7437 1.3096 20 6 3.0115 -3.3480 -0.0046 21 6 2.0127 -2.4447 0.0007 22 7 2.2876 -1.1018 -0.0005 23 1 -0.3634 0.0000 1.0276 24 1 -0.3634 0.8899 -0.5138 25 1 -0.3634 -0.8900 -0.5138 26 1 4.3972 1.3821 -0.0011 27 1 5.6785 -1.2720 0.0001 28 1 7.0167 -5.6152 -3.8614 29 1 5.3469 -4.1938 2.1373 30 1 4.4281 -5.4023 1.2080 31 1 6.4642 -6.3114 2.1430 32 1 6.5448 -6.3190 0.4820 33 1 2.7789 -4.4027 -0.0089 34 1 0.9864 -2.7811 0.0014 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260170543.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:23 Heat of formation + Delta-G solvation = 73.774634 kcal Electronic energy + Delta-G solvation = -17395.687703 eV Core-core repulsion = 14715.092510 eV Total energy + Delta-G solvation = -2680.595193 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 245.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.35645 -37.72843 -35.12632 -33.03743 -32.32050 -31.29112 -29.76128 -28.64601 -25.69837 -24.34943 -23.11317 -21.94156 -20.60117 -19.57531 -17.47259 -16.76103 -15.87863 -15.64301 -15.21430 -14.85608 -14.40826 -14.10416 -13.75090 -13.25217 -13.00149 -12.84898 -12.67771 -12.35703 -12.25503 -11.69406 -11.43562 -11.32184 -11.08809 -10.72436 -10.37034 -9.92943 -9.86776 -9.62330 -9.24789 -8.75256 -8.66443 -7.89605 -6.88266 -6.25722 -4.27365 1.34268 1.77700 3.00700 3.28278 3.33617 3.35582 3.37294 3.98381 4.32387 4.66167 4.81035 5.01558 5.04306 5.30926 5.33956 5.53251 5.61393 5.63479 5.72161 5.74063 5.95226 6.06569 6.12158 6.27137 6.43167 6.55793 6.67639 6.80043 6.94751 7.14917 7.22377 7.53469 7.61752 7.96051 8.24066 8.26125 8.31711 8.75671 9.36894 10.85496 Molecular weight = 245.12amu Principal moments of inertia in cm(-1) A = 0.027086 B = 0.007139 C = 0.006648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.512436 B = 3921.006293 C = 4210.521433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.131 3.869 3 N -0.454 5.454 4 C -0.052 4.052 5 C 0.028 3.972 6 C -0.118 4.118 7 C -0.031 4.031 8 C 0.046 3.954 9 H 0.056 0.944 10 C -0.511 4.511 11 H 0.074 0.926 12 C 0.081 3.919 13 N -0.890 5.890 14 Si 0.879 3.121 15 H -0.268 1.268 16 H -0.292 1.292 17 H -0.265 1.265 18 C 0.081 3.919 19 N -0.848 5.848 20 C -0.092 4.092 21 C 0.020 3.980 22 N -0.360 5.360 23 H 0.072 0.928 24 H 0.085 0.915 25 H 0.068 0.932 26 H 0.174 0.826 27 H 0.137 0.863 28 H 0.267 0.733 29 H 0.044 0.956 30 H 0.016 0.984 31 H 0.322 0.678 32 H 0.355 0.645 33 H 0.146 0.854 34 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.318 4.852 7.416 11.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.123 4.123 3 N -0.169 5.169 4 C -0.205 4.205 5 C -0.082 4.082 6 C -0.138 4.138 7 C -0.035 4.035 8 C 0.026 3.974 9 H 0.074 0.926 10 C -0.548 4.548 11 H 0.092 0.908 12 C -0.123 4.123 13 N -0.526 5.526 14 Si 0.706 3.294 15 H -0.193 1.193 16 H -0.218 1.218 17 H -0.190 1.190 18 C -0.050 4.050 19 N -0.378 5.378 20 C -0.113 4.113 21 C -0.099 4.099 22 N -0.032 5.032 23 H 0.091 0.909 24 H 0.104 0.896 25 H 0.087 0.913 26 H 0.191 0.809 27 H 0.155 0.845 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.034 0.966 31 H 0.132 0.868 32 H 0.170 0.830 33 H 0.164 0.836 34 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -7.257 6.257 7.234 12.006 hybrid contribution 0.367 -1.020 -0.303 1.125 sum -6.889 5.237 6.930 11.087 Atomic orbital electron populations 1.20010 0.85171 1.03460 1.02756 1.22874 0.95278 0.79917 1.14237 1.69798 1.02659 1.27809 1.16675 1.22293 0.94245 0.90625 1.13369 1.19772 0.83953 0.95330 1.09124 1.20378 0.97295 0.91328 1.04779 1.20591 0.95607 0.94558 0.92706 1.18357 0.92226 0.91795 0.94985 0.92604 1.20763 1.07957 1.23243 1.02834 0.90820 1.25067 0.97582 0.94941 0.94690 1.69892 1.34298 1.35422 1.12987 0.86813 0.82822 0.82593 0.77170 1.19340 1.21838 1.19022 1.21732 0.90862 0.94856 0.97544 1.58668 1.45613 1.26095 1.07454 1.20836 0.91934 0.99778 0.98736 1.21485 1.00770 0.80379 1.07311 1.42620 1.08004 1.05942 1.46598 0.90948 0.89623 0.91335 0.80923 0.84513 0.92335 0.93794 0.96609 0.86799 0.82955 0.83641 0.82648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.63 10.33 36.01 0.37 -0.26 16 2 C 0.13 2.15 7.96 -155.09 -1.23 0.92 16 3 N -0.45 -8.26 11.19 -10.12 -0.11 -8.37 16 4 C -0.05 -0.92 12.02 -16.96 -0.20 -1.13 16 5 C 0.03 0.53 6.80 -84.09 -0.57 -0.04 16 6 C -0.12 -2.29 9.72 -39.39 -0.38 -2.67 16 7 C -0.03 -0.60 4.76 -104.50 -0.50 -1.10 16 8 C 0.05 0.97 2.10 -92.93 -0.19 0.78 16 9 H 0.06 1.26 4.59 -51.92 -0.24 1.02 16 10 C -0.51 -12.76 7.55 -34.44 -0.26 -13.02 16 11 H 0.07 1.99 8.06 -52.48 -0.42 1.56 16 12 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 13 N -0.89 -25.37 13.96 55.43 0.77 -24.60 16 14 Si 0.88 20.85 26.92 -169.99 -4.58 16.27 16 15 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 16 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 17 H -0.27 -6.05 6.65 56.52 0.38 -5.68 16 18 C 0.08 1.52 5.98 -3.82 -0.02 1.49 16 19 N -0.85 -15.51 9.61 -10.37 -0.10 -15.61 16 20 C -0.09 -1.59 8.84 -39.87 -0.35 -1.94 16 21 C 0.02 0.31 10.80 -16.47 -0.18 0.13 16 22 N -0.36 -6.27 2.94 -58.16 -0.17 -6.44 16 23 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.07 0.66 8.04 -51.93 -0.42 0.24 16 26 H 0.17 2.62 8.06 -52.48 -0.42 2.20 16 27 H 0.14 2.55 7.75 -52.49 -0.41 2.14 16 28 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.02 0.28 7.61 -51.93 -0.40 -0.11 16 31 H 0.32 4.81 9.08 -39.29 -0.36 4.46 16 32 H 0.36 7.09 8.12 -39.29 -0.32 6.77 16 33 H 0.15 2.34 7.69 -52.48 -0.40 1.94 16 34 H 0.16 1.79 7.98 -52.49 -0.42 1.37 16 LS Contribution 287.54 15.07 4.33 4.33 Total: -1.00 -30.10 287.54 -7.71 -37.81 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -4.23 Total: 11.37 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: -3.62 Total: -14.77 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: 0.39 Total: -55.01 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.58 Total: 16.27 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -30.10 -7.71 -37.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260170543.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.581 kcal (2) G-P(sol) polarization free energy of solvation -30.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds