Wall clock time and date at job start Mon Mar 30 2020 03:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30899 * 125.31356 * 2 1 4 4 C 1.33402 * 109.87084 * 180.02562 * 3 2 1 5 5 C 1.37988 * 107.45810 * 359.97438 * 4 3 2 6 6 C 1.40976 * 133.70830 * 180.02562 * 5 4 3 7 7 C 1.35880 * 119.17398 * 179.97438 * 6 5 4 8 8 C 1.50700 * 120.11239 * 179.97438 * 7 6 5 9 9 H 1.09008 * 109.47175 * 359.97438 * 8 7 6 10 10 C 1.50696 * 109.47360 * 240.00311 * 8 7 6 11 11 H 1.08009 * 119.99887 * 295.10302 * 10 8 7 12 12 C 1.37871 * 120.00677 * 115.37860 * 10 8 7 13 13 N 1.31515 * 120.00590 * 173.12417 * 12 10 8 14 14 Si 1.86806 * 119.99589 * 353.12813 * 12 10 8 15 15 H 1.48498 * 109.47533 * 85.71016 * 14 12 10 16 16 H 1.48507 * 109.46975 * 205.71032 * 14 12 10 17 17 H 1.48504 * 109.46902 * 325.70882 * 14 12 10 18 18 C 1.52999 * 109.46962 * 120.00165 * 8 7 6 19 19 N 1.46907 * 109.46889 * 184.88285 * 18 8 7 20 20 C 1.40810 * 119.77559 * 0.27241 * 7 6 5 21 21 C 1.34674 * 120.61525 * 359.45389 * 20 7 6 22 22 N 1.35030 * 125.31517 * 180.02562 * 2 1 3 23 23 H 1.09000 * 109.47540 * 270.00015 * 1 2 3 24 24 H 1.08999 * 109.47327 * 30.00120 * 1 2 3 25 25 H 1.09004 * 109.47424 * 150.00226 * 1 2 3 26 26 H 1.08003 * 126.26963 * 179.97438 * 4 3 2 27 27 H 1.08000 * 120.41312 * 0.02562 * 6 5 4 28 28 H 0.97001 * 120.00002 * 180.02562 * 13 12 10 29 29 H 1.09003 * 109.47126 * 304.87838 * 18 8 7 30 30 H 1.08991 * 109.47371 * 64.88126 * 18 8 7 31 31 H 1.00900 * 110.99884 * 178.05301 * 19 18 8 32 32 H 1.00898 * 110.99630 * 302.00176 * 19 18 8 33 33 H 1.08003 * 119.69233 * 179.70088 * 20 7 6 34 34 H 1.08000 * 119.72133 * 180.28800 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2637 1.0681 0.0000 4 6 3.5495 0.7129 -0.0006 5 6 3.5981 -0.6661 -0.0003 6 6 4.6507 -1.6038 -0.0002 7 6 4.3562 -2.9303 0.0005 8 6 5.4649 -3.9510 0.0001 9 1 6.4284 -3.4409 -0.0013 10 6 5.3525 -4.8143 -1.2300 11 1 4.4956 -5.4585 -1.3611 12 6 6.3462 -4.7861 -2.1853 13 7 6.3173 -5.6348 -3.1895 14 14 7.7338 -3.5424 -2.0531 15 1 8.8053 -4.0869 -1.1810 16 1 8.2858 -3.2712 -3.4048 17 1 7.2133 -2.2804 -1.4686 18 6 5.3526 -4.8265 1.2497 19 7 6.4986 -5.7437 1.3096 20 6 3.0115 -3.3480 -0.0046 21 6 2.0127 -2.4447 0.0007 22 7 2.2876 -1.1018 -0.0005 23 1 -0.3634 0.0000 1.0276 24 1 -0.3634 0.8899 -0.5138 25 1 -0.3634 -0.8900 -0.5138 26 1 4.3972 1.3821 -0.0011 27 1 5.6785 -1.2720 0.0001 28 1 7.0167 -5.6152 -3.8614 29 1 5.3469 -4.1938 2.1373 30 1 4.4281 -5.4023 1.2080 31 1 6.4642 -6.3114 2.1430 32 1 6.5448 -6.3190 0.4820 33 1 2.7789 -4.4027 -0.0089 34 1 0.9864 -2.7811 0.0014 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260170543.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:23 Heat of formation + Delta-G solvation = 54.446619 kcal Electronic energy + Delta-G solvation = -17396.525828 eV Core-core repulsion = 14715.092510 eV Total energy + Delta-G solvation = -2681.433318 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 245.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.67189 -39.17504 -36.63301 -34.40688 -34.22124 -32.57822 -31.04295 -30.13746 -27.10712 -26.04067 -24.45630 -23.37302 -21.86041 -21.18603 -19.27888 -18.13967 -17.34141 -16.93848 -16.65161 -16.42030 -16.10883 -15.53907 -15.09210 -14.62800 -14.56339 -14.12274 -13.99397 -13.75996 -13.40491 -13.24079 -12.97914 -12.74922 -12.64252 -12.31096 -11.96627 -11.76259 -11.34707 -11.23914 -10.94708 -10.71802 -10.06171 -9.37267 -8.30122 -8.22826 -6.31586 -0.00244 0.41330 1.37896 1.40145 1.45173 1.74689 2.07781 2.35640 2.57395 3.08831 3.54173 3.60395 3.82102 3.87716 4.08045 4.19013 4.33782 4.48298 4.55661 4.62525 4.69503 4.74444 4.90526 4.98245 5.05260 5.10232 5.16165 5.28234 5.59033 5.60340 5.72423 5.78330 6.27678 6.36022 6.46621 6.71179 6.89947 6.94286 7.34830 8.84493 Molecular weight = 245.12amu Principal moments of inertia in cm(-1) A = 0.027086 B = 0.007139 C = 0.006648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.512436 B = 3921.006293 C = 4210.521433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.142 3.858 3 N -0.481 5.481 4 C -0.057 4.057 5 C 0.000 4.000 6 C -0.128 4.128 7 C -0.046 4.046 8 C 0.047 3.953 9 H 0.042 0.958 10 C -0.491 4.491 11 H 0.047 0.953 12 C 0.032 3.968 13 N -0.938 5.938 14 Si 0.925 3.075 15 H -0.265 1.265 16 H -0.299 1.299 17 H -0.254 1.254 18 C 0.088 3.912 19 N -0.855 5.855 20 C -0.115 4.115 21 C 0.041 3.959 22 N -0.370 5.370 23 H 0.094 0.906 24 H 0.095 0.905 25 H 0.091 0.909 26 H 0.190 0.810 27 H 0.135 0.865 28 H 0.264 0.736 29 H 0.060 0.940 30 H 0.023 0.977 31 H 0.342 0.658 32 H 0.345 0.655 33 H 0.154 0.846 34 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.138 5.855 8.756 13.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.113 4.113 3 N -0.196 5.196 4 C -0.210 4.210 5 C -0.110 4.110 6 C -0.148 4.148 7 C -0.050 4.050 8 C 0.028 3.972 9 H 0.060 0.940 10 C -0.529 4.529 11 H 0.065 0.935 12 C -0.167 4.167 13 N -0.577 5.577 14 Si 0.751 3.249 15 H -0.190 1.190 16 H -0.226 1.226 17 H -0.178 1.178 18 C -0.044 4.044 19 N -0.385 5.385 20 C -0.135 4.135 21 C -0.078 4.078 22 N -0.043 5.043 23 H 0.112 0.888 24 H 0.113 0.887 25 H 0.110 0.890 26 H 0.207 0.793 27 H 0.152 0.848 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.042 0.958 31 H 0.154 0.846 32 H 0.158 0.842 33 H 0.172 0.828 34 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -9.069 7.271 8.618 14.470 hybrid contribution 0.772 -1.256 -0.633 1.604 sum -8.297 6.016 7.985 12.992 Atomic orbital electron populations 1.20288 0.81478 1.05111 1.04646 1.23946 0.97202 0.79149 1.11011 1.69857 1.02871 1.28822 1.18077 1.22696 0.95007 0.90804 1.12516 1.19842 0.84717 0.95640 1.10760 1.20388 0.97618 0.91514 1.05249 1.20451 0.96252 0.94155 0.94177 1.18287 0.92443 0.92001 0.94506 0.93953 1.20900 1.06118 1.22420 1.03473 0.93482 1.25675 0.99844 0.96401 0.94814 1.70006 1.35568 1.37690 1.14441 0.86063 0.80734 0.81414 0.76647 1.19017 1.22619 1.17829 1.21625 0.91316 0.94739 0.96695 1.58641 1.45557 1.26394 1.07938 1.20899 0.91345 1.00698 1.00598 1.22092 1.02438 0.79300 1.03973 1.42883 1.07624 1.06843 1.46908 0.88796 0.88677 0.89021 0.79319 0.84767 0.92666 0.92160 0.95849 0.84563 0.84191 0.82844 0.78053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.04 10.33 71.24 0.74 -0.30 16 2 C 0.14 4.22 7.96 138.02 1.10 5.32 16 3 N -0.48 -16.47 11.19 -185.92 -2.08 -18.56 16 4 C -0.06 -1.98 12.02 84.40 1.01 -0.97 16 5 C 0.00 0.00 6.80 38.77 0.26 0.26 16 6 C -0.13 -4.88 9.72 22.39 0.22 -4.66 16 7 C -0.05 -1.79 4.76 -19.78 -0.09 -1.88 16 8 C 0.05 1.98 2.10 -12.29 -0.03 1.96 16 9 H 0.04 1.89 4.59 -2.38 -0.01 1.88 16 10 C -0.49 -24.83 7.55 25.60 0.19 -24.63 16 11 H 0.05 2.59 8.06 -2.91 -0.02 2.57 16 12 C 0.03 1.71 5.47 84.65 0.46 2.18 16 13 N -0.94 -54.99 13.96 21.45 0.30 -54.69 16 14 Si 0.92 43.51 26.92 68.60 1.85 45.36 16 15 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 16 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 17 H -0.25 -11.33 6.65 99.48 0.66 -10.67 16 18 C 0.09 3.15 5.98 86.30 0.52 3.67 16 19 N -0.85 -30.33 9.61 -186.71 -1.79 -32.12 16 20 C -0.11 -3.77 8.84 22.08 0.20 -3.57 16 21 C 0.04 1.13 10.80 83.06 0.90 2.03 16 22 N -0.37 -11.91 2.94 -337.92 -0.99 -12.90 16 23 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.09 1.28 8.04 -2.39 -0.02 1.26 16 26 H 0.19 5.54 8.06 -2.91 -0.02 5.52 16 27 H 0.13 4.99 7.75 -2.91 -0.02 4.97 16 28 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 29 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.02 0.81 7.61 -2.39 -0.02 0.79 16 31 H 0.34 9.66 9.08 -89.69 -0.81 8.85 16 32 H 0.34 13.68 8.12 -89.70 -0.73 12.96 16 33 H 0.15 4.70 7.69 -2.91 -0.02 4.68 16 34 H 0.20 3.60 7.98 -2.91 -0.02 3.58 16 Total: -1.00 -65.59 287.54 2.29 -63.29 By element: Atomic # 1 Polarization: 30.69 SS G_CDS: -0.46 Total: 30.24 kcal Atomic # 6 Polarization: -26.09 SS G_CDS: 5.48 Total: -20.62 kcal Atomic # 7 Polarization: -113.70 SS G_CDS: -4.57 Total: -118.27 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 1.85 Total: 45.36 kcal Total: -65.59 2.29 -63.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260170543.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.739 kcal (2) G-P(sol) polarization free energy of solvation -65.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds