Wall clock time and date at job start Mon Mar 30 2020 03:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.40471 * 120.21097 * 2 1 4 4 C 1.34929 * 120.43865 * 180.02562 * 3 2 1 5 5 N 1.36541 * 120.65726 * 359.93545 * 4 3 2 6 6 N 1.40044 * 132.43415 * 180.02562 * 5 4 3 7 7 C 1.31480 * 108.91469 * 179.97438 * 6 5 4 8 8 C 1.50707 * 125.49721 * 179.97438 * 7 6 5 9 9 H 1.08992 * 109.46581 * 25.02884 * 8 7 6 10 10 C 1.50704 * 109.46719 * 145.02821 * 8 7 6 11 11 H 1.07995 * 120.00119 * 5.44230 * 10 8 7 12 12 C 1.37882 * 119.99295 * 185.43614 * 10 8 7 13 13 N 1.31509 * 120.00251 * 9.56413 * 12 10 8 14 14 Si 1.86798 * 119.99632 * 189.55572 * 12 10 8 15 15 H 1.48501 * 109.46802 * 84.99878 * 14 12 10 16 16 H 1.48498 * 109.47275 * 204.99387 * 14 12 10 17 17 H 1.48498 * 109.47311 * 324.99915 * 14 12 10 18 18 C 1.52996 * 109.47307 * 265.02968 * 8 7 6 19 19 N 1.46900 * 109.46961 * 63.77211 * 18 8 7 20 20 C 1.38548 * 109.00923 * 0.02562 * 7 6 5 21 21 C 1.37132 * 120.12202 * 359.97438 * 5 4 3 22 22 C 1.36072 * 120.20441 * 179.97438 * 2 1 3 23 23 H 1.09005 * 109.47008 * 270.04923 * 1 2 3 24 24 H 1.09008 * 109.46744 * 30.04606 * 1 2 3 25 25 H 1.08997 * 109.47691 * 150.04923 * 1 2 3 26 26 H 1.08000 * 119.78031 * 359.97438 * 3 2 1 27 27 H 1.07998 * 119.67817 * 179.91663 * 4 3 2 28 28 H 0.96998 * 120.00554 * 179.97438 * 13 12 10 29 29 H 1.09001 * 109.46982 * 183.77552 * 18 8 7 30 30 H 1.09000 * 109.47271 * 303.77851 * 18 8 7 31 31 H 1.00901 * 110.99865 * 179.97438 * 19 18 8 32 32 H 1.00900 * 111.00565 * 303.95541 * 19 18 8 33 33 H 1.08001 * 126.21657 * 179.97438 * 20 7 6 34 34 H 1.08000 * 120.38337 * 0.26093 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2138 1.2139 0.0000 4 6 3.5630 1.2193 -0.0005 5 7 4.2639 0.0475 0.0003 6 7 5.6360 -0.2329 0.0005 7 6 5.8046 -1.5368 0.0019 8 6 7.1336 -2.2474 0.0020 9 1 7.8932 -1.5970 0.4356 10 6 7.0280 -3.5101 0.8180 11 1 6.0722 -3.8175 1.2158 12 6 8.1517 -4.2727 1.0564 13 7 9.3405 -3.8095 0.7377 14 14 7.9853 -5.9638 1.8322 15 1 7.7022 -6.9676 0.7751 16 1 9.2505 -6.3175 2.5245 17 1 6.8709 -5.9507 2.8136 18 6 7.5237 -2.5998 -1.4348 19 7 7.7147 -1.3649 -2.2072 20 6 4.5633 -2.1523 0.0021 21 6 3.5993 -1.1520 0.0021 22 6 2.1915 -1.1760 0.0005 23 1 -0.3633 0.0009 1.0277 24 1 -0.3633 0.8897 -0.5146 25 1 -0.3634 -0.8904 -0.5130 26 1 1.6736 2.1491 -0.0004 27 1 4.0940 2.1597 -0.0019 28 1 10.1311 -4.3458 0.9058 29 1 8.4513 -3.1722 -1.4294 30 1 6.7322 -3.1946 -1.8907 31 1 7.9736 -1.5710 -3.1604 32 1 6.8891 -0.7859 -2.1735 33 1 4.3787 -3.2164 0.0028 34 1 1.6611 -2.1168 -0.0033 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260211361.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:40 Heat of formation + Delta-G solvation = 92.904775 kcal Electronic energy + Delta-G solvation = -17178.660701 eV Core-core repulsion = 14498.895053 eV Total energy + Delta-G solvation = -2679.765648 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 245.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.42360 -37.49251 -35.05841 -32.99101 -32.23352 -30.82821 -29.51847 -27.63016 -26.50715 -23.94555 -23.00316 -21.67961 -20.95639 -18.95003 -17.03169 -16.30976 -15.97785 -15.20586 -14.94421 -14.79481 -14.35010 -14.26611 -13.53333 -13.42013 -13.28708 -12.63009 -12.49547 -12.04850 -11.75250 -11.39337 -11.21549 -10.99219 -10.80606 -10.51134 -10.35420 -10.00166 -9.94746 -9.74592 -9.18104 -8.47005 -8.41637 -7.62619 -7.02194 -6.06242 -4.09745 1.09044 1.53141 2.84249 3.30790 3.37487 3.39705 3.47412 3.76877 4.41047 4.62035 4.71384 4.97956 5.14415 5.23955 5.31233 5.46174 5.49219 5.66685 5.72374 5.90755 6.00940 6.06106 6.37697 6.52348 6.58437 6.64669 6.79727 6.85689 7.31703 7.39419 7.57723 7.72177 7.88554 8.11979 8.24433 8.37244 8.52325 8.93597 9.53376 11.02484 Molecular weight = 245.12amu Principal moments of inertia in cm(-1) A = 0.029598 B = 0.006163 C = 0.005429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.768674 B = 4542.475712 C = 5155.968456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.068 4.068 3 C -0.186 4.186 4 C 0.124 3.876 5 N -0.291 5.291 6 N -0.326 5.326 7 C 0.151 3.849 8 C 0.118 3.882 9 H 0.061 0.939 10 C -0.517 4.517 11 H 0.064 0.936 12 C 0.067 3.933 13 N -0.880 5.880 14 Si 0.893 3.107 15 H -0.279 1.279 16 H -0.287 1.287 17 H -0.274 1.274 18 C 0.080 3.920 19 N -0.852 5.852 20 C -0.262 4.262 21 C 0.082 3.918 22 C -0.115 4.115 23 H 0.071 0.929 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.144 0.856 27 H 0.160 0.840 28 H 0.263 0.737 29 H 0.093 0.907 30 H 0.004 0.996 31 H 0.321 0.679 32 H 0.326 0.674 33 H 0.151 0.849 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.021 6.588 -3.251 16.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.073 4.073 3 C -0.209 4.209 4 C -0.002 4.002 5 N -0.057 5.057 6 N -0.149 5.149 7 C -0.007 4.007 8 C 0.097 3.903 9 H 0.079 0.921 10 C -0.556 4.556 11 H 0.083 0.917 12 C -0.136 4.136 13 N -0.517 5.517 14 Si 0.721 3.279 15 H -0.205 1.205 16 H -0.212 1.212 17 H -0.199 1.199 18 C -0.051 4.051 19 N -0.380 5.380 20 C -0.291 4.291 21 C -0.035 4.035 22 C -0.135 4.135 23 H 0.090 0.910 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.162 0.838 27 H 0.177 0.823 28 H 0.073 0.927 29 H 0.111 0.889 30 H 0.022 0.978 31 H 0.131 0.869 32 H 0.138 0.862 33 H 0.169 0.831 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -13.509 7.802 -2.712 15.834 hybrid contribution -1.256 -1.999 -0.118 2.363 sum -14.765 5.803 -2.830 16.115 Atomic orbital electron populations 1.20731 0.90543 1.02822 1.02417 1.19701 0.96356 0.92515 0.98710 1.20488 0.91975 0.98843 1.09556 1.21345 0.91782 0.88764 0.98351 1.46453 1.06857 1.04672 1.47753 1.78038 0.86509 1.17392 1.32979 1.23327 0.98460 0.89182 0.89711 1.17505 0.85201 0.94400 0.93206 0.92125 1.21010 0.94967 1.06425 1.33234 0.91745 1.24961 0.95061 0.98258 0.95360 1.69999 0.97597 1.36686 1.47423 0.86583 0.77521 0.84432 0.79384 1.20460 1.21242 1.19869 1.21926 1.00422 0.89201 0.93513 1.58891 1.41984 1.20962 1.16164 1.21411 0.90162 0.99109 1.18398 1.19608 0.92981 0.87200 1.03727 1.20365 0.90328 0.98797 1.03967 0.90996 0.91424 0.91388 0.83840 0.82255 0.92709 0.88920 0.97820 0.86913 0.86193 0.83095 0.84449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 10.02 36.00 0.36 -0.52 16 2 C -0.07 -0.82 5.88 -104.56 -0.62 -1.43 16 3 C -0.19 -2.16 9.67 -39.92 -0.39 -2.55 16 4 C 0.12 1.78 11.19 -16.63 -0.19 1.59 16 5 N -0.29 -5.53 3.90 -10.71 -0.04 -5.57 16 6 N -0.33 -7.34 12.23 33.52 0.41 -6.93 16 7 C 0.15 3.56 5.20 -82.63 -0.43 3.13 16 8 C 0.12 3.07 2.31 -92.92 -0.21 2.85 16 9 H 0.06 1.80 8.09 -51.93 -0.42 1.38 16 10 C -0.52 -14.09 8.22 -34.44 -0.28 -14.37 16 11 H 0.06 1.73 6.68 -52.49 -0.35 1.38 16 12 C 0.07 1.82 5.17 -17.82 -0.09 1.73 16 13 N -0.88 -25.08 12.16 55.43 0.67 -24.40 16 14 Si 0.89 20.94 29.55 -169.99 -5.02 15.91 16 15 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 16 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 17 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 18 C 0.08 1.94 6.13 -3.83 -0.02 1.91 16 19 N -0.85 -18.25 9.62 -10.37 -0.10 -18.35 16 20 C -0.26 -5.61 9.79 -39.21 -0.38 -6.00 16 21 C 0.08 1.53 6.81 -84.27 -0.57 0.96 16 22 C -0.11 -1.67 9.75 -39.39 -0.38 -2.05 16 23 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.07 0.45 8.10 -51.92 -0.42 0.03 16 25 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 26 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 27 H 0.16 1.85 8.06 -52.49 -0.42 1.43 16 28 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.09 2.44 6.83 -51.93 -0.35 2.09 16 30 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 31 H 0.32 5.90 9.08 -39.29 -0.36 5.54 16 32 H 0.33 6.90 7.68 -39.29 -0.30 6.60 16 33 H 0.15 3.11 7.57 -52.49 -0.40 2.71 16 34 H 0.14 1.69 8.06 -52.49 -0.42 1.26 16 LS Contribution 289.80 15.07 4.37 4.37 Total: -1.00 -31.03 289.80 -7.20 -38.23 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -4.27 Total: 11.50 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: -3.21 Total: -14.75 kcal Atomic # 7 Polarization: -56.20 SS G_CDS: 0.94 Total: -55.26 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.03 -7.20 -38.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260211361.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.130 kcal (2) G-P(sol) polarization free energy of solvation -31.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds