Wall clock time and date at job start Mon Mar 30 2020 03:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.40471 * 120.21097 * 2 1 4 4 C 1.34929 * 120.43865 * 180.02562 * 3 2 1 5 5 N 1.36541 * 120.65726 * 359.93545 * 4 3 2 6 6 N 1.40044 * 132.43415 * 180.02562 * 5 4 3 7 7 C 1.31480 * 108.91469 * 179.97438 * 6 5 4 8 8 C 1.50707 * 125.49721 * 179.97438 * 7 6 5 9 9 H 1.08992 * 109.46581 * 25.02884 * 8 7 6 10 10 C 1.50704 * 109.46719 * 145.02821 * 8 7 6 11 11 H 1.07995 * 120.00119 * 5.44230 * 10 8 7 12 12 C 1.37882 * 119.99295 * 185.43614 * 10 8 7 13 13 N 1.31509 * 120.00251 * 9.56413 * 12 10 8 14 14 Si 1.86798 * 119.99632 * 189.55572 * 12 10 8 15 15 H 1.48501 * 109.46802 * 84.99878 * 14 12 10 16 16 H 1.48498 * 109.47275 * 204.99387 * 14 12 10 17 17 H 1.48498 * 109.47311 * 324.99915 * 14 12 10 18 18 C 1.52996 * 109.47307 * 265.02968 * 8 7 6 19 19 N 1.46900 * 109.46961 * 63.77211 * 18 8 7 20 20 C 1.38548 * 109.00923 * 0.02562 * 7 6 5 21 21 C 1.37132 * 120.12202 * 359.97438 * 5 4 3 22 22 C 1.36072 * 120.20441 * 179.97438 * 2 1 3 23 23 H 1.09005 * 109.47008 * 270.04923 * 1 2 3 24 24 H 1.09008 * 109.46744 * 30.04606 * 1 2 3 25 25 H 1.08997 * 109.47691 * 150.04923 * 1 2 3 26 26 H 1.08000 * 119.78031 * 359.97438 * 3 2 1 27 27 H 1.07998 * 119.67817 * 179.91663 * 4 3 2 28 28 H 0.96998 * 120.00554 * 179.97438 * 13 12 10 29 29 H 1.09001 * 109.46982 * 183.77552 * 18 8 7 30 30 H 1.09000 * 109.47271 * 303.77851 * 18 8 7 31 31 H 1.00901 * 110.99865 * 179.97438 * 19 18 8 32 32 H 1.00900 * 111.00565 * 303.95541 * 19 18 8 33 33 H 1.08001 * 126.21657 * 179.97438 * 20 7 6 34 34 H 1.08000 * 120.38337 * 0.26093 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2138 1.2139 0.0000 4 6 3.5630 1.2193 -0.0005 5 7 4.2639 0.0475 0.0003 6 7 5.6360 -0.2329 0.0005 7 6 5.8046 -1.5368 0.0019 8 6 7.1336 -2.2474 0.0020 9 1 7.8932 -1.5970 0.4356 10 6 7.0280 -3.5101 0.8180 11 1 6.0722 -3.8175 1.2158 12 6 8.1517 -4.2727 1.0564 13 7 9.3405 -3.8095 0.7377 14 14 7.9853 -5.9638 1.8322 15 1 7.7022 -6.9676 0.7751 16 1 9.2505 -6.3175 2.5245 17 1 6.8709 -5.9507 2.8136 18 6 7.5237 -2.5998 -1.4348 19 7 7.7147 -1.3649 -2.2072 20 6 4.5633 -2.1523 0.0021 21 6 3.5993 -1.1520 0.0021 22 6 2.1915 -1.1760 0.0005 23 1 -0.3633 0.0009 1.0277 24 1 -0.3633 0.8897 -0.5146 25 1 -0.3634 -0.8904 -0.5130 26 1 1.6736 2.1491 -0.0004 27 1 4.0940 2.1597 -0.0019 28 1 10.1311 -4.3458 0.9058 29 1 8.4513 -3.1722 -1.4294 30 1 6.7322 -3.1946 -1.8907 31 1 7.9736 -1.5710 -3.1604 32 1 6.8891 -0.7859 -2.1735 33 1 4.3787 -3.2164 0.0028 34 1 1.6611 -2.1168 -0.0033 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260211361.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:40 Heat of formation + Delta-G solvation = 71.373311 kcal Electronic energy + Delta-G solvation = -17179.594375 eV Core-core repulsion = 14498.895053 eV Total energy + Delta-G solvation = -2680.699322 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 245.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.82609 -38.84021 -36.79100 -34.32081 -34.19896 -32.18773 -31.05743 -29.17162 -27.64702 -25.97123 -24.36604 -23.23918 -22.26818 -20.65721 -18.49390 -18.14518 -17.37726 -16.81097 -16.48442 -16.13312 -15.99746 -15.68359 -15.19828 -14.82073 -14.23686 -14.17642 -13.91270 -13.29860 -13.13377 -12.88897 -12.73643 -12.60711 -12.44977 -12.33533 -11.90521 -11.75852 -11.52403 -11.21652 -11.11436 -10.53450 -9.90853 -9.44745 -8.40002 -8.15510 -6.26623 -0.05192 0.25579 1.43591 1.44925 1.51750 1.56387 1.89496 2.44150 2.51907 3.13675 3.42796 3.69941 3.83744 3.94242 4.12876 4.22650 4.48184 4.60627 4.68058 4.79093 4.80766 4.90736 4.93361 5.01117 5.09584 5.23190 5.46218 5.48063 5.54128 5.69569 5.76682 5.85657 6.10172 6.18227 6.42938 6.67621 6.81738 6.88113 7.40229 8.93648 Molecular weight = 245.12amu Principal moments of inertia in cm(-1) A = 0.029598 B = 0.006163 C = 0.005429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.768674 B = 4542.475712 C = 5155.968456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.043 4.043 3 C -0.154 4.154 4 C 0.088 3.912 5 N -0.291 5.291 6 N -0.365 5.365 7 C 0.127 3.873 8 C 0.123 3.877 9 H 0.009 0.991 10 C -0.532 4.532 11 H 0.062 0.938 12 C 0.019 3.981 13 N -0.913 5.913 14 Si 0.962 3.038 15 H -0.268 1.268 16 H -0.283 1.283 17 H -0.269 1.269 18 C 0.096 3.904 19 N -0.851 5.851 20 C -0.306 4.306 21 C 0.091 3.909 22 C -0.141 4.141 23 H 0.088 0.912 24 H 0.093 0.907 25 H 0.078 0.922 26 H 0.196 0.804 27 H 0.183 0.817 28 H 0.265 0.735 29 H 0.066 0.934 30 H 0.006 0.994 31 H 0.339 0.661 32 H 0.331 0.669 33 H 0.144 0.856 34 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.949 7.718 -3.336 20.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.048 4.048 3 C -0.175 4.175 4 C -0.037 4.037 5 N -0.057 5.057 6 N -0.190 5.190 7 C -0.028 4.028 8 C 0.102 3.898 9 H 0.027 0.973 10 C -0.571 4.571 11 H 0.080 0.920 12 C -0.181 4.181 13 N -0.551 5.551 14 Si 0.786 3.214 15 H -0.193 1.193 16 H -0.209 1.209 17 H -0.194 1.194 18 C -0.036 4.036 19 N -0.381 5.381 20 C -0.335 4.335 21 C -0.028 4.028 22 C -0.160 4.160 23 H 0.107 0.893 24 H 0.112 0.888 25 H 0.096 0.904 26 H 0.213 0.787 27 H 0.200 0.800 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.025 0.975 31 H 0.151 0.849 32 H 0.143 0.857 33 H 0.162 0.838 34 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -17.437 8.945 -2.815 19.798 hybrid contribution -0.338 -2.080 -0.101 2.110 sum -17.775 6.865 -2.917 19.276 Atomic orbital electron populations 1.20883 0.86876 1.04738 1.03978 1.20342 0.98814 0.91489 0.94181 1.21224 0.90786 1.00871 1.04633 1.22156 0.93163 0.88295 1.00040 1.46601 1.05902 1.06222 1.46997 1.77846 0.89021 1.16767 1.35360 1.22816 0.97919 0.90014 0.92064 1.17186 0.85660 0.93329 0.93604 0.97275 1.21281 0.95019 1.07183 1.33586 0.91978 1.25784 0.94542 1.01911 0.95876 1.70134 0.98293 1.38097 1.48613 0.85515 0.77495 0.79676 0.78678 1.19316 1.20880 1.19382 1.21565 0.98888 0.89833 0.93294 1.58745 1.42244 1.19845 1.17266 1.21297 0.90305 0.99488 1.22437 1.19957 0.94492 0.86371 1.01951 1.20705 0.88317 1.01213 1.05784 0.89315 0.88822 0.90350 0.78735 0.79978 0.92640 0.91548 0.97533 0.84857 0.85703 0.83790 0.82440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 10.02 71.23 0.71 -0.37 16 2 C -0.04 -0.82 5.88 -19.83 -0.12 -0.93 16 3 C -0.15 -2.75 9.67 22.05 0.21 -2.54 16 4 C 0.09 2.29 11.19 83.20 0.93 3.22 16 5 N -0.29 -11.00 3.90 -187.79 -0.73 -11.73 16 6 N -0.36 -17.20 12.23 -47.88 -0.59 -17.78 16 7 C 0.13 6.38 5.20 42.69 0.22 6.60 16 8 C 0.12 6.89 2.31 -12.28 -0.03 6.86 16 9 H 0.01 0.59 8.09 -2.39 -0.02 0.57 16 10 C -0.53 -30.61 8.22 25.60 0.21 -30.40 16 11 H 0.06 3.51 6.68 -2.91 -0.02 3.49 16 12 C 0.02 1.07 5.17 84.66 0.44 1.51 16 13 N -0.91 -54.52 12.16 21.45 0.26 -54.26 16 14 Si 0.96 44.15 29.55 68.60 2.03 46.17 16 15 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 16 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 17 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 18 C 0.10 4.90 6.13 86.30 0.53 5.43 16 19 N -0.85 -38.12 9.62 -186.72 -1.80 -39.91 16 20 C -0.31 -13.78 9.79 22.51 0.22 -13.56 16 21 C 0.09 3.41 6.81 39.11 0.27 3.68 16 22 C -0.14 -3.73 9.75 22.39 0.22 -3.51 16 23 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 24 H 0.09 0.55 8.10 -2.38 -0.02 0.53 16 25 H 0.08 0.71 8.08 -2.39 -0.02 0.69 16 26 H 0.20 1.59 8.06 -2.91 -0.02 1.57 16 27 H 0.18 3.75 8.06 -2.91 -0.02 3.73 16 28 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 29 H 0.07 3.72 6.83 -2.39 -0.02 3.70 16 30 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.34 12.79 9.08 -89.69 -0.81 11.98 16 32 H 0.33 14.60 7.68 -89.69 -0.69 13.91 16 33 H 0.14 6.35 7.57 -2.91 -0.02 6.33 16 34 H 0.16 3.45 8.06 -2.91 -0.02 3.43 16 Total: -1.00 -73.52 289.80 2.61 -70.91 By element: Atomic # 1 Polarization: 30.99 SS G_CDS: -0.38 Total: 30.62 kcal Atomic # 6 Polarization: -27.83 SS G_CDS: 3.82 Total: -24.01 kcal Atomic # 7 Polarization: -120.83 SS G_CDS: -2.85 Total: -123.69 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Total: -73.52 2.61 -70.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260211361.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.279 kcal (2) G-P(sol) polarization free energy of solvation -73.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds