Wall clock time and date at job start Mon Mar 30 2020 03:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31530 * 1 3 3 Si 1.86802 * 119.99888 * 2 1 4 4 H 1.48499 * 109.46993 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47120 * 299.99730 * 3 2 1 6 6 H 1.48497 * 109.47038 * 59.99952 * 3 2 1 7 7 C 1.38852 * 120.00115 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99811 * 195.11313 * 7 2 1 9 9 N 1.36925 * 120.00363 * 15.10742 * 7 2 1 10 10 C 1.38524 * 119.99829 * 48.78933 * 9 7 2 11 11 C 1.39708 * 120.53669 * 5.00126 * 10 9 7 12 12 C 1.38137 * 118.32090 * 179.74668 * 11 10 9 13 13 N 1.32561 * 119.19393 * 0.25098 * 12 11 10 14 14 C 1.31794 * 121.02580 * 0.02562 * 13 12 11 15 15 C 1.50704 * 119.07331 * 179.97438 * 14 13 12 16 16 C 1.52999 * 117.49944 * 8.74945 * 15 14 13 17 17 C 1.52994 * 117.50141 * 300.08638 * 15 14 13 18 18 N 1.31727 * 121.85271 * 0.02562 * 14 13 12 19 19 C 1.46501 * 120.00306 * 228.79287 * 9 7 2 20 20 C 1.52993 * 117.50028 * 11.38205 * 19 9 7 21 21 C 1.52995 * 117.49719 * 302.71924 * 19 9 7 22 22 H 0.96997 * 120.00198 * 354.82985 * 1 2 3 23 23 H 1.08002 * 120.83768 * 0.02562 * 11 10 9 24 24 H 1.07996 * 120.40132 * 180.27596 * 12 11 10 25 25 H 1.09001 * 115.54992 * 154.41088 * 15 14 13 26 26 H 1.09003 * 117.50038 * 359.97438 * 16 15 14 27 27 H 1.09000 * 117.50096 * 145.02550 * 16 15 14 28 28 H 1.09000 * 117.50201 * 214.97786 * 17 15 14 29 29 H 1.09005 * 117.49799 * 359.97438 * 17 15 14 30 30 H 1.09000 * 115.55041 * 157.05479 * 19 9 7 31 31 H 1.09000 * 117.49663 * 0.02562 * 20 19 9 32 32 H 1.08999 * 117.50636 * 145.02121 * 20 19 9 33 33 H 1.09003 * 117.50228 * 214.97630 * 21 19 9 34 34 H 1.08998 * 117.50248 * 0.02562 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2493 1.6178 0.0000 4 1 3.7093 1.3464 -0.0006 5 1 1.8906 2.3965 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0096 -1.2025 -0.0005 8 1 3.0616 -1.2187 0.2433 9 7 1.3605 -2.3677 -0.3101 10 6 0.5633 -2.4371 -1.4408 11 6 0.4953 -1.3605 -2.3286 12 6 -0.3102 -1.4810 -3.4443 13 7 -0.9907 -2.6029 -3.6324 14 6 -0.9095 -3.5989 -2.7730 15 6 -1.7028 -4.8542 -3.0298 16 6 -2.4030 -4.9828 -4.3840 17 6 -3.2244 -4.7226 -3.1188 18 7 -0.1552 -3.5275 -1.6954 19 6 1.5092 -3.5410 0.5545 20 6 2.1757 -3.3353 1.9161 21 6 2.9263 -4.0637 0.7984 22 1 -0.4850 0.8366 0.0757 23 1 1.0617 -0.4585 -2.1494 24 1 -0.3842 -0.6712 -4.1550 25 1 -1.3016 -5.7636 -2.5824 26 1 -2.2904 -4.1592 -5.0891 27 1 -2.4631 -5.9768 -4.8273 28 1 -3.8244 -5.5455 -2.7303 29 1 -3.6519 -3.7280 -2.9912 30 1 0.7057 -4.2750 0.4932 31 1 2.5032 -2.3269 2.1689 32 1 1.8111 -3.9341 2.7507 33 1 3.0550 -5.1415 0.8981 34 1 3.7480 -3.5344 0.3160 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260256884.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:31 Heat of formation + Delta-G solvation = 114.155102 kcal Electronic energy + Delta-G solvation = -17598.734021 eV Core-core repulsion = 14919.889857 eV Total energy + Delta-G solvation = -2678.844164 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 245.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.75779 -37.58719 -36.24677 -34.10197 -32.42001 -30.91230 -29.18072 -25.45284 -23.72992 -22.91282 -21.93558 -21.61380 -20.34884 -20.12805 -17.58252 -16.58065 -15.87986 -15.09683 -14.86549 -14.30005 -14.04320 -13.84608 -13.53958 -13.46697 -12.61645 -12.20903 -11.84688 -11.49212 -11.33757 -11.14956 -11.11628 -10.83322 -10.45671 -10.31726 -10.15338 -10.07644 -9.63819 -9.53771 -9.39570 -8.80858 -8.35168 -7.91998 -6.78148 -6.30367 -4.25011 2.33780 2.67464 3.06339 3.13671 3.16658 3.92075 4.25284 4.45471 4.66021 4.78018 4.89367 5.21491 5.24215 5.38129 5.61174 5.70631 5.78465 5.85714 5.92194 5.97651 6.13687 6.23990 6.26463 6.47793 6.51851 6.55423 6.65373 6.78988 6.89279 6.93544 7.07125 7.29141 7.67073 7.96048 8.39416 8.65110 9.06526 9.35596 9.79019 10.53548 Molecular weight = 245.12amu Principal moments of inertia in cm(-1) A = 0.022710 B = 0.008500 C = 0.006684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.632244 B = 3293.163708 C = 4188.064031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.047 3.953 3 Si 0.913 3.087 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.279 1.279 7 C -0.330 4.330 8 H 0.087 0.913 9 N -0.397 5.397 10 C 0.441 3.559 11 C -0.234 4.234 12 C 0.133 3.867 13 N -0.593 5.593 14 C 0.361 3.639 15 C -0.082 4.082 16 C -0.159 4.159 17 C -0.163 4.163 18 N -0.595 5.595 19 C 0.097 3.903 20 C -0.180 4.180 21 C -0.206 4.206 22 H 0.272 0.728 23 H 0.133 0.867 24 H 0.140 0.860 25 H 0.116 0.884 26 H 0.108 0.892 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.116 0.884 31 H 0.105 0.895 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.280 -4.738 -2.528 5.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.162 4.162 3 Si 0.739 3.261 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.204 1.204 7 C -0.459 4.459 8 H 0.105 0.895 9 N -0.091 5.091 10 C 0.197 3.803 11 C -0.265 4.265 12 C -0.024 4.024 13 N -0.316 5.316 14 C 0.091 3.909 15 C -0.102 4.102 16 C -0.197 4.197 17 C -0.201 4.201 18 N -0.322 5.322 19 C -0.009 4.009 20 C -0.218 4.218 21 C -0.245 4.245 22 H 0.083 0.917 23 H 0.151 0.849 24 H 0.158 0.842 25 H 0.134 0.866 26 H 0.126 0.874 27 H 0.108 0.892 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.134 0.866 31 H 0.123 0.877 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.776 -5.297 -2.518 5.916 hybrid contribution 0.831 1.838 0.498 2.078 sum 0.055 -3.459 -2.020 4.006 Atomic orbital electron populations 1.70006 1.06168 1.28206 1.42872 1.25614 0.95310 1.00071 0.95240 0.86082 0.80068 0.81647 0.78329 1.18978 1.20088 1.20426 1.19149 0.93805 0.82667 1.50267 0.89514 1.41395 1.42564 1.08936 1.16238 1.18411 0.88442 0.88144 0.85341 1.21931 1.06373 1.01500 0.96648 1.22386 0.91225 0.94041 0.94755 1.67805 1.28266 1.02222 1.33346 1.21212 0.91145 0.92419 0.86161 1.20432 0.92978 0.94988 1.01846 1.22929 1.03058 1.02651 0.91058 1.22888 0.92347 1.02841 1.02059 1.67439 1.14015 1.27966 1.22800 1.21608 0.94351 0.91872 0.93102 1.23133 1.04773 1.02085 0.91839 1.23276 0.97731 0.98943 1.04542 0.91726 0.84923 0.84242 0.86610 0.87395 0.89210 0.88921 0.88847 0.86585 0.87705 0.89818 0.89751 0.89307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.39 11.65 55.49 0.65 -21.74 16 2 C 0.05 1.17 3.28 -17.45 -0.06 1.12 16 3 Si 0.91 19.11 29.57 -169.99 -5.03 14.08 16 4 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 6 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.33 -8.27 7.18 -15.05 -0.11 -8.38 16 8 H 0.09 2.12 7.79 -52.48 -0.41 1.71 16 9 N -0.40 -9.94 2.90 -107.75 -0.31 -10.25 16 10 C 0.44 11.29 6.73 -154.72 -1.04 10.25 16 11 C -0.23 -5.77 7.86 -39.07 -0.31 -6.07 16 12 C 0.13 2.97 11.29 -17.27 -0.20 2.78 16 13 N -0.59 -13.20 9.34 -10.80 -0.10 -13.30 16 14 C 0.36 8.08 7.31 -157.25 -1.15 6.93 16 15 C -0.08 -1.46 6.23 -91.77 -0.57 -2.03 16 16 C -0.16 -2.34 10.01 -26.69 -0.27 -2.61 16 17 C -0.16 -2.48 10.24 -26.70 -0.27 -2.75 16 18 N -0.60 -14.57 9.24 -9.94 -0.09 -14.66 16 19 C 0.10 2.12 6.31 -67.94 -0.43 1.69 16 20 C -0.18 -3.43 9.86 -26.70 -0.26 -3.69 16 21 C -0.21 -3.79 10.22 -26.70 -0.27 -4.07 16 22 H 0.27 6.90 8.32 -40.82 -0.34 6.56 16 23 H 0.13 3.33 5.66 -52.49 -0.30 3.03 16 24 H 0.14 2.63 8.06 -52.49 -0.42 2.21 16 25 H 0.12 1.91 8.14 -51.93 -0.42 1.49 16 26 H 0.11 1.72 7.54 -51.93 -0.39 1.33 16 27 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 29 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 30 H 0.12 2.57 7.54 -51.93 -0.39 2.18 16 31 H 0.10 2.13 7.08 -51.93 -0.37 1.76 16 32 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 34 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 LS Contribution 289.52 15.07 4.36 4.36 Total: -1.00 -28.40 289.52 -9.83 -38.23 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -4.37 Total: 10.13 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -4.94 Total: -6.84 kcal Atomic # 7 Polarization: -60.10 SS G_CDS: 0.14 Total: -59.96 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.08 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.40 -9.83 -38.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260256884.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.382 kcal (2) G-P(sol) polarization free energy of solvation -28.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds