Wall clock time and date at job start Mon Mar 30 2020 03:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35098 * 125.68497 * 2 1 4 4 N 1.36840 * 107.17900 * 179.70034 * 3 2 1 5 5 C 1.36483 * 132.56693 * 180.27878 * 4 3 2 6 6 C 1.34949 * 120.61098 * 179.97438 * 5 4 3 7 7 C 1.40476 * 120.29413 * 0.02706 * 6 5 4 8 8 C 1.36023 * 119.69567 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.33128 * 179.97438 * 8 7 6 10 10 H 1.09008 * 109.46747 * 180.02562 * 9 8 7 11 11 C 1.50694 * 109.47226 * 60.00377 * 9 8 7 12 12 H 1.07998 * 120.00305 * 275.10077 * 11 9 8 13 13 C 1.37877 * 119.99970 * 95.10637 * 11 9 8 14 14 N 1.31517 * 119.99976 * 5.49485 * 13 11 9 15 15 Si 1.86797 * 120.00233 * 185.49676 * 13 11 9 16 16 H 1.48503 * 109.47270 * 89.99658 * 15 13 11 17 17 H 1.48500 * 109.47381 * 210.00231 * 15 13 11 18 18 H 1.48507 * 109.46886 * 329.99693 * 15 13 11 19 19 C 1.53003 * 109.47475 * 299.99937 * 9 8 7 20 20 N 1.46893 * 109.47071 * 185.34950 * 19 9 8 21 21 C 1.37077 * 106.99974 * 0.26809 * 4 3 2 22 22 N 1.32558 * 108.03268 * 359.97438 * 21 4 3 23 23 H 1.09001 * 109.47345 * 89.99926 * 1 2 3 24 24 H 1.08999 * 109.47216 * 210.00085 * 1 2 3 25 25 H 1.08998 * 109.47632 * 329.99631 * 1 2 3 26 26 H 1.08003 * 126.41341 * 359.97122 * 3 2 1 27 27 H 1.08001 * 119.69358 * 359.96435 * 5 4 3 28 28 H 1.07994 * 119.85659 * 180.02562 * 6 5 4 29 29 H 1.08007 * 120.15120 * 179.97438 * 7 6 5 30 30 H 0.97002 * 119.99697 * 180.02562 * 14 13 11 31 31 H 1.09001 * 109.47288 * 305.35140 * 19 9 8 32 32 H 1.08999 * 109.46654 * 65.35071 * 19 9 8 33 33 H 1.00894 * 111.00668 * 56.05180 * 20 19 9 34 34 H 1.00909 * 110.99851 * 180.02562 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2951 1.0973 0.0000 4 7 3.5927 0.6630 0.0068 5 6 4.7872 1.3232 0.0148 6 6 5.9504 0.6390 0.0210 7 6 5.9463 -0.7657 0.0187 8 6 4.7628 -1.4361 0.0108 9 6 4.7417 -2.9430 0.0077 10 1 3.7090 -3.2918 0.0008 11 6 5.4380 -3.4577 1.2411 12 1 6.5117 -3.5743 1.2461 13 6 4.7044 -3.7797 2.3632 14 7 3.3904 -3.7413 2.3231 15 14 5.5767 -4.2706 3.9403 16 1 5.8349 -3.0599 4.7607 17 1 4.7226 -5.2141 4.7054 18 1 6.8664 -4.9280 3.6086 19 6 5.4627 -3.4607 -1.2385 20 7 5.3317 -4.9221 -1.3084 21 6 3.5567 -0.7073 0.0047 22 7 2.2859 -1.0844 -0.0025 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3634 0.8899 0.5139 26 1 1.9631 2.1251 -0.0004 27 1 4.8016 2.4031 0.0160 28 1 6.8886 1.1738 0.0277 29 1 6.8787 -1.3110 0.0233 30 1 2.8743 -3.9675 3.1127 31 1 5.0183 -3.0132 -2.1276 32 1 6.5178 -3.1926 -1.1855 33 1 4.3617 -5.1994 -1.2935 34 1 5.8004 -5.2886 -2.1234 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260341421.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:40 Heat of formation + Delta-G solvation = 84.500068 kcal Electronic energy + Delta-G solvation = -17673.341469 eV Core-core repulsion = 14993.211366 eV Total energy + Delta-G solvation = -2680.130103 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 245.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.03723 -37.12851 -35.34430 -32.59255 -32.10884 -31.14487 -29.26954 -26.91304 -26.67665 -24.15945 -22.54716 -21.83854 -20.14848 -19.50008 -16.86194 -16.70081 -15.68919 -15.20715 -15.03912 -14.61624 -14.47633 -13.62376 -13.54935 -12.96984 -12.83709 -12.46314 -12.26755 -12.08564 -11.93489 -11.44505 -11.02408 -10.81258 -10.71807 -10.57664 -10.40441 -10.06216 -9.27998 -9.12920 -8.96426 -8.36432 -7.91257 -7.63083 -6.95518 -5.88051 -3.90116 1.58649 2.02725 3.30335 3.38373 3.44500 3.48012 3.50605 4.38974 4.54385 4.93906 5.01288 5.24430 5.37610 5.57109 5.62983 5.69958 5.79145 5.91510 6.00504 6.16011 6.24690 6.31983 6.43219 6.45582 6.66187 6.83471 7.03188 7.13136 7.32802 7.41940 7.81860 7.91329 8.02991 8.09929 8.37334 8.45568 8.73082 9.13522 9.68354 11.17683 Molecular weight = 245.12amu Principal moments of inertia in cm(-1) A = 0.018437 B = 0.008917 C = 0.008285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.348439 B = 3139.377756 C = 3378.856794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.044 3.956 3 C -0.127 4.127 4 N -0.358 5.358 5 C -0.003 4.003 6 C -0.119 4.119 7 C -0.149 4.149 8 C 0.029 3.971 9 C 0.067 3.933 10 H 0.086 0.914 11 C -0.484 4.484 12 H 0.057 0.943 13 C 0.067 3.933 14 N -0.868 5.868 15 Si 0.887 3.113 16 H -0.285 1.285 17 H -0.288 1.288 18 H -0.273 1.273 19 C 0.083 3.917 20 N -0.830 5.830 21 C 0.238 3.762 22 N -0.461 5.461 23 H 0.065 0.935 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.168 0.832 27 H 0.147 0.853 28 H 0.137 0.863 29 H 0.134 0.866 30 H 0.259 0.741 31 H -0.007 1.007 32 H 0.054 0.946 33 H 0.338 0.662 34 H 0.319 0.681 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.134 9.170 -6.171 11.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.092 4.092 3 C -0.259 4.259 4 N -0.028 5.028 5 C -0.125 4.125 6 C -0.139 4.139 7 C -0.172 4.172 8 C 0.026 3.974 9 C 0.047 3.953 10 H 0.104 0.896 11 C -0.521 4.521 12 H 0.075 0.925 13 C -0.137 4.137 14 N -0.504 5.504 15 Si 0.715 3.285 16 H -0.211 1.211 17 H -0.214 1.214 18 H -0.198 1.198 19 C -0.047 4.047 20 N -0.357 5.357 21 C -0.005 4.005 22 N -0.180 5.180 23 H 0.084 0.916 24 H 0.092 0.908 25 H 0.083 0.917 26 H 0.186 0.814 27 H 0.164 0.836 28 H 0.155 0.845 29 H 0.152 0.848 30 H 0.069 0.931 31 H 0.011 0.989 32 H 0.073 0.927 33 H 0.150 0.850 34 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 0.044 8.386 -5.360 9.953 hybrid contribution 0.272 1.108 0.288 1.177 sum 0.317 9.494 -5.071 10.768 Atomic orbital electron populations 1.20024 0.87865 1.02584 1.01842 1.20855 0.96547 0.88579 1.03181 1.22087 0.81459 1.00211 1.22147 1.42825 1.05545 1.09200 1.45265 1.21155 0.83522 0.97693 1.10137 1.20734 0.96433 0.95239 1.01527 1.20723 0.98698 0.92522 1.05302 1.20233 0.87031 0.99574 0.90577 1.18031 1.00711 0.83698 0.92831 0.89627 1.20724 0.93180 1.42123 0.96109 0.92507 1.25007 0.94814 0.95102 0.98803 1.70001 1.04423 1.47157 1.28832 0.86682 0.79820 0.78136 0.83876 1.21104 1.21383 1.19762 1.21821 0.99461 0.87294 0.96166 1.58460 1.19925 1.11519 1.45841 1.21071 0.94622 0.79393 1.05408 1.70754 0.98299 1.27982 1.20967 0.91585 0.90827 0.91699 0.81431 0.83561 0.84545 0.84822 0.93118 0.98871 0.92715 0.84994 0.87092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.97 10.42 36.01 0.38 -0.60 16 2 C 0.04 0.86 7.06 -82.98 -0.59 0.28 16 3 C -0.13 -2.28 11.66 -16.43 -0.19 -2.47 16 4 N -0.36 -7.10 2.94 -62.67 -0.18 -7.28 16 5 C 0.00 -0.05 10.95 -16.65 -0.18 -0.24 16 6 C -0.12 -1.92 9.99 -39.91 -0.40 -2.32 16 7 C -0.15 -2.93 8.89 -39.53 -0.35 -3.28 16 8 C 0.03 0.68 4.80 -104.40 -0.50 0.18 16 9 C 0.07 1.66 2.27 -92.92 -0.21 1.45 16 10 H 0.09 2.44 6.82 -51.92 -0.35 2.08 16 11 C -0.48 -13.10 7.67 -34.44 -0.26 -13.36 16 12 H 0.06 1.53 7.82 -52.49 -0.41 1.12 16 13 C 0.07 1.87 5.45 -17.82 -0.10 1.78 16 14 N -0.87 -25.69 12.77 55.43 0.71 -24.98 16 15 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 16 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 17 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 18 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 19 C 0.08 1.76 5.89 -3.83 -0.02 1.74 16 20 N -0.83 -16.50 9.35 -10.37 -0.10 -16.60 16 21 C 0.24 5.60 7.52 -156.05 -1.17 4.43 16 22 N -0.46 -11.15 11.01 -9.01 -0.10 -11.25 16 23 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.17 2.27 8.06 -52.48 -0.42 1.85 16 27 H 0.15 1.79 8.06 -52.49 -0.42 1.36 16 28 H 0.14 1.64 8.06 -52.49 -0.42 1.22 16 29 H 0.13 2.48 7.64 -52.48 -0.40 2.08 16 30 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 31 H -0.01 -0.14 8.14 -51.93 -0.42 -0.56 16 32 H 0.05 1.11 7.59 -51.93 -0.39 0.72 16 33 H 0.34 6.75 8.99 -39.29 -0.35 6.40 16 34 H 0.32 5.18 9.08 -39.29 -0.36 4.82 16 LS Contribution 292.50 15.07 4.41 4.41 Total: -1.00 -32.83 292.50 -8.26 -41.08 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -4.36 Total: 10.14 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: -3.60 Total: -12.41 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: 0.33 Total: -60.11 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -32.83 -8.26 -41.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260341421.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.581 kcal (2) G-P(sol) polarization free energy of solvation -32.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds