Wall clock time and date at job start Mon Mar 30 2020 03:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35106 * 126.40969 * 2 1 4 4 C 1.50699 * 125.68908 * 359.97438 * 3 2 1 5 5 H 1.08997 * 109.47109 * 0.02562 * 4 3 2 6 6 C 1.50697 * 109.47424 * 240.00232 * 4 3 2 7 7 H 1.08002 * 120.00323 * 295.05353 * 6 4 3 8 8 C 1.37882 * 119.99655 * 115.04625 * 6 4 3 9 9 N 1.31509 * 119.99599 * 184.87318 * 8 6 4 10 10 Si 1.86795 * 119.99972 * 4.88478 * 8 6 4 11 11 H 1.48500 * 109.47709 * 84.68916 * 10 8 6 12 12 H 1.48509 * 109.47039 * 204.68732 * 10 8 6 13 13 H 1.48502 * 109.47219 * 324.68502 * 10 8 6 14 14 C 1.52999 * 109.46633 * 120.00366 * 4 3 2 15 15 N 1.46905 * 109.46997 * 185.46751 * 14 4 3 16 16 N 1.33521 * 108.62396 * 180.02562 * 3 2 1 17 17 C 1.32560 * 109.15843 * 359.97438 * 16 3 2 18 18 C 1.40934 * 132.32788 * 180.02562 * 17 16 3 19 19 C 1.36022 * 119.32675 * 179.17757 * 18 17 16 20 20 C 1.40471 * 119.69412 * 0.69678 * 19 18 17 21 21 C 1.34963 * 120.29885 * 359.56957 * 20 19 18 22 22 N 1.36488 * 120.60513 * 359.97438 * 21 20 19 23 23 H 1.09007 * 109.47038 * 90.00238 * 1 2 3 24 24 H 1.09003 * 109.47107 * 330.00976 * 1 2 3 25 25 H 1.08998 * 109.47188 * 210.00302 * 1 2 3 26 26 H 0.97008 * 120.00037 * 180.02562 * 9 8 6 27 27 H 1.08999 * 109.47662 * 305.46496 * 14 4 3 28 28 H 1.09002 * 109.47623 * 65.47126 * 14 4 3 29 29 H 1.00899 * 111.00009 * 184.88867 * 15 14 4 30 30 H 1.00905 * 110.99648 * 308.84003 * 15 14 4 31 31 H 1.08003 * 120.33179 * 359.97438 * 18 17 16 32 32 H 1.07999 * 120.15856 * 180.26602 * 19 18 17 33 33 H 1.07998 * 119.85733 * 179.58565 * 20 19 18 34 34 H 1.08000 * 119.69557 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3089 1.0873 0.0000 4 6 1.8457 2.5214 -0.0005 5 1 0.7561 2.5512 -0.0005 6 6 2.3677 3.2174 -1.2310 7 1 3.4305 3.3575 -1.3623 8 6 1.4883 3.6754 -2.1892 9 7 1.9462 4.1964 -3.3065 10 14 -0.3533 3.5561 -1.9001 11 1 -0.8085 4.7317 -1.1153 12 1 -1.0588 3.5300 -3.2067 13 1 -0.6568 2.3117 -1.1488 14 6 2.3750 3.2286 1.2487 15 7 1.8175 4.5861 1.3160 16 7 3.5803 0.6795 -0.0006 17 6 3.6121 -0.6457 -0.0004 18 6 4.6764 -1.5695 -0.0003 19 6 4.4023 -2.9017 0.0170 20 6 3.0669 -3.3374 0.0195 21 6 2.0582 -2.4408 0.0138 22 7 2.3192 -1.1012 0.0059 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 0.8901 0.5137 25 1 -0.3633 -0.8899 0.5139 26 1 1.3276 4.5190 -3.9805 27 1 2.0781 2.6696 2.1360 28 1 3.4625 3.2845 1.2014 29 1 2.2130 5.1015 2.0880 30 1 1.9550 5.0770 0.4452 31 1 5.6994 -1.2230 -0.0008 32 1 5.2076 -3.6213 0.0216 33 1 2.8463 -4.3946 0.0264 34 1 1.0350 -2.7866 0.0154 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260874792.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:02 Heat of formation + Delta-G solvation = 81.590771 kcal Electronic energy + Delta-G solvation = -17646.098890 eV Core-core repulsion = 14965.842630 eV Total energy + Delta-G solvation = -2680.256260 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 245.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.26958 -37.31922 -34.99075 -33.43979 -32.13954 -31.17461 -29.80398 -28.31101 -25.95426 -24.26658 -22.77392 -22.09233 -20.81093 -18.94836 -17.29882 -16.64523 -16.23657 -15.50222 -15.44175 -14.62185 -14.51644 -14.17721 -13.73485 -13.05382 -12.74595 -12.65752 -12.46452 -12.17840 -11.95297 -11.54099 -11.35675 -11.32010 -11.13009 -10.73972 -10.52568 -9.80925 -9.71452 -9.45158 -9.01225 -8.53148 -7.99182 -7.73366 -7.19307 -6.06773 -4.06646 1.07987 1.67404 3.03943 3.33335 3.40846 3.43259 3.46078 4.06018 4.44587 4.62615 4.77328 4.99950 5.09923 5.27865 5.33288 5.50395 5.61434 5.70618 5.88776 5.93273 6.12806 6.19256 6.24437 6.38269 6.40117 6.51968 6.65220 6.81887 6.93898 7.11912 7.42060 7.64840 7.73257 8.10953 8.40722 8.51239 8.69912 9.03547 9.54790 11.05324 Molecular weight = 245.12amu Principal moments of inertia in cm(-1) A = 0.026598 B = 0.007815 C = 0.007421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.467660 B = 3582.198709 C = 3772.402919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.095 4.095 3 C 0.124 3.876 4 C 0.077 3.923 5 H 0.063 0.937 6 C -0.496 4.496 7 H 0.076 0.924 8 C 0.073 3.927 9 N -0.896 5.896 10 Si 0.874 3.126 11 H -0.268 1.268 12 H -0.295 1.295 13 H -0.258 1.258 14 C 0.083 3.917 15 N -0.851 5.851 16 N -0.471 5.471 17 C 0.203 3.797 18 C -0.072 4.072 19 C -0.121 4.121 20 C -0.160 4.160 21 C 0.059 3.941 22 N -0.362 5.362 23 H 0.066 0.934 24 H 0.083 0.917 25 H 0.053 0.947 26 H 0.264 0.736 27 H 0.039 0.961 28 H 0.024 0.976 29 H 0.322 0.678 30 H 0.354 0.646 31 H 0.144 0.856 32 H 0.134 0.866 33 H 0.141 0.859 34 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.991 -13.044 7.755 15.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.206 4.206 3 C -0.010 4.010 4 C 0.057 3.943 5 H 0.081 0.919 6 C -0.534 4.534 7 H 0.094 0.906 8 C -0.129 4.129 9 N -0.533 5.533 10 Si 0.702 3.298 11 H -0.193 1.193 12 H -0.222 1.222 13 H -0.183 1.183 14 C -0.049 4.049 15 N -0.381 5.381 16 N -0.191 5.191 17 C -0.038 4.038 18 C -0.092 4.092 19 C -0.144 4.144 20 C -0.182 4.182 21 C -0.064 4.064 22 N -0.036 5.036 23 H 0.085 0.915 24 H 0.102 0.898 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.057 0.943 28 H 0.042 0.958 29 H 0.132 0.868 30 H 0.169 0.831 31 H 0.162 0.838 32 H 0.152 0.848 33 H 0.159 0.841 34 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -1.131 -12.749 7.672 14.922 hybrid contribution -0.590 -0.469 -0.370 0.839 sum -1.721 -13.217 7.301 15.198 Atomic orbital electron populations 1.20170 0.87314 1.02389 1.02302 1.21013 0.94282 0.84795 1.20494 1.21689 0.87208 0.96752 0.95351 1.17953 0.96928 0.84280 0.95190 0.91946 1.20833 0.95585 1.35137 1.01830 0.90565 1.25136 0.98784 0.94538 0.94459 1.69925 1.35120 1.41097 1.07120 0.86917 0.85889 0.79912 0.77079 1.19331 1.22217 1.18293 1.21656 0.96421 0.89660 0.97123 1.58807 1.65038 1.04764 1.09503 1.70714 1.22163 1.04973 1.21245 1.21050 0.83721 0.91484 1.07578 1.20207 0.97383 0.90963 1.00654 1.20839 0.96520 0.95154 1.01919 1.20591 0.92204 0.99328 1.06074 1.21474 1.00866 0.81333 1.02725 1.42718 1.09203 1.05073 1.46629 0.91513 0.89779 0.92791 0.92657 0.94253 0.95763 0.86822 0.83099 0.83795 0.84830 0.84108 0.83011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.08 9.14 36.01 0.33 -0.75 16 2 C -0.10 -1.95 7.03 -81.47 -0.57 -2.52 16 3 C 0.12 2.91 5.55 -82.97 -0.46 2.45 16 4 C 0.08 1.86 2.30 -92.93 -0.21 1.64 16 5 H 0.06 1.50 3.15 -51.93 -0.16 1.33 16 6 C -0.50 -13.94 7.82 -34.44 -0.27 -14.21 16 7 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 8 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 9 N -0.90 -27.25 13.96 55.43 0.77 -26.48 16 10 Si 0.87 21.18 27.25 -169.99 -4.63 16.55 16 11 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.30 -7.25 7.11 56.52 0.40 -6.85 16 13 H -0.26 -5.75 4.91 56.52 0.28 -5.47 16 14 C 0.08 1.81 6.23 -3.82 -0.02 1.79 16 15 N -0.85 -17.19 9.66 -10.37 -0.10 -17.29 16 16 N -0.47 -11.17 11.32 -9.00 -0.10 -11.27 16 17 C 0.20 4.09 7.81 -156.04 -1.22 2.87 16 18 C -0.07 -1.11 10.11 -39.36 -0.40 -1.51 16 19 C -0.12 -1.45 10.07 -39.54 -0.40 -1.85 16 20 C -0.16 -1.83 9.99 -39.90 -0.40 -2.23 16 21 C 0.06 0.82 10.85 -16.64 -0.18 0.64 16 22 N -0.36 -6.72 2.94 -58.46 -0.17 -6.89 16 23 H 0.07 1.14 8.02 -51.93 -0.42 0.72 16 24 H 0.08 1.45 6.66 -51.93 -0.35 1.10 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 27 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.32 5.43 9.08 -39.29 -0.36 5.07 16 30 H 0.35 7.76 7.97 -39.29 -0.31 7.45 16 31 H 0.14 1.96 8.06 -52.48 -0.42 1.54 16 32 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 33 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16 34 H 0.15 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 284.50 15.07 4.29 4.29 Total: -1.00 -33.23 284.50 -8.08 -41.32 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -4.24 Total: 11.48 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: -3.90 Total: -11.71 kcal Atomic # 7 Polarization: -62.33 SS G_CDS: 0.40 Total: -61.93 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.63 Total: 16.55 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -33.23 -8.08 -41.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260874792.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.909 kcal (2) G-P(sol) polarization free energy of solvation -33.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds