Wall clock time and date at job start Mon Mar 30 2020 04:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.39875 * 125.45676 * 2 1 4 4 C 1.30245 * 110.08452 * 180.02562 * 3 2 1 5 5 C 1.45924 * 107.78502 * 359.97438 * 4 3 2 6 6 C 1.39944 * 134.03440 * 180.02562 * 5 4 3 7 7 C 1.36458 * 119.63943 * 179.97438 * 6 5 4 8 8 C 1.50703 * 119.68545 * 180.02562 * 7 6 5 9 9 H 1.08996 * 109.47481 * 19.99300 * 8 7 6 10 10 N 1.46906 * 109.47343 * 139.99839 * 8 7 6 11 11 C 1.53007 * 109.46852 * 259.99509 * 8 7 6 12 12 C 1.50701 * 109.46816 * 174.99999 * 11 8 7 13 13 H 1.07995 * 120.00587 * 0.02562 * 12 11 8 14 14 C 1.37880 * 119.99584 * 180.02562 * 12 11 8 15 15 N 1.31513 * 119.99761 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 120.00327 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.47175 * 89.99645 * 16 14 12 18 18 H 1.48503 * 109.47388 * 210.00087 * 16 14 12 19 19 H 1.48505 * 109.47188 * 329.99888 * 16 14 12 20 20 C 1.38968 * 120.63348 * 359.97436 * 7 6 5 21 21 C 1.36591 * 120.80724 * 0.06823 * 20 7 6 22 22 C 1.37036 * 125.46534 * 179.97438 * 2 1 3 23 23 H 1.08996 * 109.47526 * 89.97997 * 1 2 3 24 24 H 1.09008 * 109.46796 * 209.97346 * 1 2 3 25 25 H 1.09003 * 109.47541 * 329.96828 * 1 2 3 26 26 H 1.08001 * 126.10954 * 179.97438 * 4 3 2 27 27 H 1.08008 * 120.18036 * 359.94954 * 6 5 4 28 28 H 1.00901 * 110.99798 * 59.99415 * 10 8 7 29 29 H 1.00896 * 110.99851 * 183.95147 * 10 8 7 30 30 H 1.08996 * 109.47118 * 294.99701 * 11 8 7 31 31 H 1.08996 * 109.47139 * 54.99969 * 11 8 7 32 32 H 0.97001 * 119.99969 * 179.97438 * 15 14 12 33 33 H 1.07993 * 119.59793 * 179.97438 * 20 7 6 34 34 H 1.08002 * 120.07134 * 179.97438 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2764 1.1394 0.0000 4 6 3.5322 0.7941 -0.0005 5 6 3.5937 -0.6639 -0.0003 6 6 4.6398 -1.5934 -0.0002 7 6 4.3565 -2.9282 0.0005 8 6 5.4823 -3.9301 0.0012 9 1 6.3957 -3.4501 0.3524 10 7 5.1427 -5.0477 0.8921 11 6 5.6968 -4.4572 -1.4191 12 6 6.8996 -5.3648 -1.4417 13 1 7.4552 -5.5478 -0.5339 14 6 7.2907 -5.9616 -2.6215 15 7 8.3407 -6.7533 -2.6414 16 14 6.3302 -5.6446 -4.1919 17 1 6.8987 -4.4636 -4.8901 18 1 6.4212 -6.8339 -5.0766 19 1 4.9068 -5.3842 -3.8576 20 6 3.0398 -3.3727 0.0017 21 6 2.0018 -2.4848 0.0008 22 6 2.2601 -1.1161 0.0005 23 1 -0.3634 0.0004 -1.0276 24 1 -0.3633 -0.8903 0.5135 25 1 -0.3634 0.8897 0.5143 26 1 4.3772 1.4667 -0.0011 27 1 5.6659 -1.2561 -0.0011 28 1 4.2988 -5.5094 0.5875 29 1 5.9082 -5.7014 0.9601 30 1 4.8154 -5.0141 -1.7369 31 1 5.8610 -3.6193 -2.0966 32 1 8.6156 -7.1734 -3.4713 33 1 2.8348 -4.4329 0.0019 34 1 0.9830 -2.8433 0.0013 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261044482.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:20 Heat of formation + Delta-G solvation = 82.833615 kcal Electronic energy + Delta-G solvation = -16964.771175 eV Core-core repulsion = 14284.568809 eV Total energy + Delta-G solvation = -2680.202366 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 245.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.11452 -37.93795 -34.83191 -33.44418 -32.37167 -30.29158 -29.31213 -28.55275 -26.61370 -24.16487 -22.85617 -21.63502 -20.63773 -19.65309 -17.15033 -17.06613 -16.12416 -15.57324 -15.45875 -14.40761 -14.29475 -14.09292 -13.62815 -13.37121 -13.16072 -12.97268 -12.88025 -12.46348 -12.10888 -11.77179 -11.40117 -11.22203 -10.86594 -10.70053 -10.49963 -10.23956 -9.80573 -9.77514 -9.26161 -8.63003 -8.44682 -7.97408 -7.49054 -6.12978 -4.12422 1.13438 1.75851 2.43347 2.61037 3.25684 3.33654 3.37282 4.03032 4.38227 4.46201 4.66500 4.84914 5.05591 5.12906 5.19268 5.21791 5.28566 5.42801 5.61329 5.66734 5.81585 5.96238 6.11599 6.27922 6.49894 6.53114 6.63854 6.94679 6.98683 7.05934 7.17730 7.28515 7.67170 7.68597 7.94504 8.21105 8.42150 8.90095 9.49589 10.99710 Molecular weight = 245.12amu Principal moments of inertia in cm(-1) A = 0.032970 B = 0.005401 C = 0.005252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.053887 B = 5183.288294 C = 5329.772033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.417 5.417 3 N -0.264 5.264 4 C 0.073 3.927 5 C -0.178 4.178 6 C -0.043 4.043 7 C -0.089 4.089 8 C 0.140 3.860 9 H 0.082 0.918 10 N -0.839 5.839 11 C -0.038 4.038 12 C -0.525 4.525 13 H 0.075 0.925 14 C 0.071 3.929 15 N -0.899 5.899 16 Si 0.878 3.122 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.267 1.267 20 C -0.049 4.049 21 C -0.148 4.148 22 C 0.117 3.883 23 H 0.065 0.935 24 H 0.081 0.919 25 H 0.083 0.917 26 H 0.195 0.805 27 H 0.128 0.872 28 H 0.327 0.673 29 H 0.351 0.649 30 H 0.016 0.984 31 H 0.016 0.984 32 H 0.264 0.736 33 H 0.127 0.873 34 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.767 10.982 5.028 18.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.207 5.207 3 N -0.076 5.076 4 C -0.125 4.125 5 C -0.186 4.186 6 C -0.064 4.064 7 C -0.091 4.091 8 C 0.029 3.971 9 H 0.100 0.900 10 N -0.368 5.368 11 C -0.077 4.077 12 C -0.563 4.563 13 H 0.093 0.907 14 C -0.131 4.131 15 N -0.537 5.537 16 Si 0.705 3.295 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.191 1.191 20 C -0.070 4.070 21 C -0.170 4.170 22 C 0.004 3.996 23 H 0.083 0.917 24 H 0.100 0.900 25 H 0.102 0.898 26 H 0.211 0.789 27 H 0.146 0.854 28 H 0.138 0.862 29 H 0.166 0.834 30 H 0.034 0.966 31 H 0.034 0.966 32 H 0.074 0.926 33 H 0.145 0.855 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -14.734 12.413 5.491 20.033 hybrid contribution 0.171 -1.163 -1.930 2.260 sum -14.563 11.250 3.561 18.744 Atomic orbital electron populations 1.21649 0.74687 1.03811 1.02619 1.48024 1.05489 1.01212 1.65934 1.76493 1.02766 1.09174 1.19173 1.25031 0.94517 0.93332 0.99574 1.19856 0.93052 0.93106 1.12556 1.20205 0.97797 0.91340 0.97039 1.19680 0.94979 0.94046 1.00418 1.20261 0.93594 0.89997 0.93272 0.90033 1.59246 1.09239 1.14872 1.53444 1.20320 0.97565 0.96573 0.93258 1.21060 1.11230 1.27135 0.96848 0.90730 1.24993 0.94670 0.94534 0.98917 1.69907 1.25297 1.31062 1.27479 0.86810 0.81227 0.77829 0.83593 1.20246 1.21407 1.19121 1.20569 0.91704 0.99337 0.95410 1.19706 0.99604 0.88773 1.08910 1.18757 0.90686 0.89385 1.00779 0.91656 0.90030 0.89847 0.78875 0.85385 0.86176 0.83442 0.96593 0.96599 0.92647 0.85512 0.86289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.04 11.40 59.85 0.68 1.72 16 2 N -0.42 -5.74 4.05 -65.47 -0.27 -6.01 16 3 N -0.26 -3.80 12.40 31.87 0.40 -3.41 16 4 C 0.07 0.97 12.28 -15.15 -0.19 0.79 16 5 C -0.18 -2.74 6.37 -105.21 -0.67 -3.41 16 6 C -0.04 -0.68 9.66 -39.58 -0.38 -1.06 16 7 C -0.09 -1.52 4.92 -104.99 -0.52 -2.04 16 8 C 0.14 2.68 2.97 -68.86 -0.20 2.47 16 9 H 0.08 1.61 7.97 -51.93 -0.41 1.19 16 10 N -0.84 -14.95 9.02 -5.65 -0.05 -15.00 16 11 C -0.04 -0.87 3.67 -27.88 -0.10 -0.97 16 12 C -0.52 -14.09 9.10 -34.44 -0.31 -14.40 16 13 H 0.07 2.13 7.39 -52.49 -0.39 1.74 16 14 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 15 N -0.90 -26.90 13.96 55.43 0.77 -26.13 16 16 Si 0.88 21.42 27.47 -169.99 -4.67 16.75 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 19 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 20 C -0.05 -0.76 9.21 -39.91 -0.37 -1.13 16 21 C -0.15 -2.09 9.97 -39.79 -0.40 -2.49 16 22 C 0.12 1.77 6.87 -84.17 -0.58 1.19 16 23 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.08 0.60 8.14 -51.92 -0.42 0.17 16 25 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.19 1.82 8.06 -52.49 -0.42 1.39 16 27 H 0.13 1.83 8.01 -52.48 -0.42 1.40 16 28 H 0.33 5.38 7.31 -39.29 -0.29 5.10 16 29 H 0.35 6.64 7.90 -39.29 -0.31 6.33 16 30 H 0.02 0.37 7.20 -51.93 -0.37 -0.01 16 31 H 0.02 0.37 7.57 -51.93 -0.39 -0.02 16 32 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.13 1.80 6.62 -52.49 -0.35 1.45 16 34 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 288.34 15.07 4.35 4.35 Total: -1.00 -31.81 288.34 -6.82 -38.62 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -4.21 Total: 8.26 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: -3.13 Total: -17.44 kcal Atomic # 7 Polarization: -51.40 SS G_CDS: 0.85 Total: -50.54 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -31.81 -6.82 -38.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261044482.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.458 kcal (2) G-P(sol) polarization free energy of solvation -31.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds