Wall clock time and date at job start Mon Mar 30 2020 03:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99564 * 2 1 4 4 H 1.48504 * 109.47255 * 264.71188 * 3 2 1 5 5 H 1.48497 * 109.47271 * 24.71750 * 3 2 1 6 6 H 1.48504 * 109.46857 * 144.71717 * 3 2 1 7 7 C 1.37876 * 120.00215 * 179.72156 * 2 1 3 8 8 H 1.08006 * 120.00125 * 186.78923 * 7 2 1 9 9 C 1.50702 * 119.99934 * 6.79330 * 7 2 1 10 10 H 1.08999 * 109.46861 * 305.18856 * 9 7 2 11 11 N 1.46899 * 109.46802 * 65.18749 * 9 7 2 12 12 C 1.50700 * 109.46817 * 185.18806 * 9 7 2 13 13 C 1.38285 * 119.92606 * 279.71833 * 12 9 7 14 14 C 1.38111 * 120.07105 * 179.76616 * 13 12 9 15 15 C 1.38885 * 119.92399 * 0.51765 * 14 13 12 16 16 N 1.39855 * 120.07083 * 179.76228 * 15 14 13 17 17 C 1.36446 * 125.83924 * 179.66468 * 16 15 14 18 18 N 1.28259 * 114.54896 * 179.77408 * 17 16 15 19 19 C 1.46974 * 110.19949 * 0.49839 * 18 17 16 20 20 C 1.47289 * 125.84199 * 359.97438 * 16 15 14 21 21 C 1.38895 * 119.86159 * 359.73764 * 15 14 13 22 22 C 1.38105 * 119.92004 * 0.02562 * 21 15 14 23 23 H 0.97000 * 120.00224 * 0.02562 * 1 2 3 24 24 H 1.00898 * 111.00229 * 293.52524 * 11 9 7 25 25 H 1.00901 * 111.00062 * 57.48341 * 11 9 7 26 26 H 1.07996 * 119.96646 * 0.03354 * 13 12 9 27 27 H 1.08004 * 120.03498 * 180.23621 * 14 13 12 28 28 H 1.07992 * 122.72934 * 0.02562 * 17 16 15 29 29 H 1.08996 * 110.55185 * 241.11765 * 19 18 17 30 30 H 1.09007 * 110.67196 * 118.36681 * 19 18 17 31 31 H 1.08996 * 110.69909 * 298.39314 * 20 16 15 32 32 H 1.09003 * 110.69871 * 61.60650 * 20 16 15 33 33 H 1.07995 * 120.04110 * 179.97438 * 21 15 14 34 34 H 1.08011 * 119.96275 * 180.02562 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.6083 1.9821 -1.3941 5 1 1.3951 2.6823 0.5854 6 1 3.4863 1.4751 0.8087 7 6 2.0045 -1.1940 0.0058 8 1 3.0789 -1.1967 0.1164 9 6 1.2590 -2.4953 -0.1423 10 1 0.4822 -2.5576 0.6198 11 7 0.6440 -2.5583 -1.4748 12 6 2.2185 -3.6455 0.0231 13 6 3.0222 -4.0310 -1.0341 14 6 3.9060 -5.0816 -0.8843 15 6 3.9795 -5.7580 0.3264 16 7 4.8699 -6.8255 0.4799 17 6 5.0429 -7.5648 1.6136 18 7 5.9166 -8.4984 1.5128 19 6 6.5077 -8.4972 0.1671 20 6 5.7858 -7.3399 -0.5525 21 6 3.1671 -5.3717 1.3848 22 6 2.2890 -4.3172 1.2299 23 1 -0.4850 0.8400 -0.0004 24 1 -0.0794 -1.8618 -1.5725 25 1 1.3397 -2.4612 -2.1991 26 1 2.9617 -3.5072 -1.9766 27 1 4.5361 -5.3798 -1.7093 28 1 4.4864 -7.3816 2.5208 29 1 6.3118 -9.4431 -0.3377 30 1 7.5798 -8.3066 0.2179 31 1 5.2279 -7.7096 -1.4128 32 1 6.4968 -6.5709 -0.8546 33 1 3.2216 -5.8959 2.3274 34 1 1.6572 -4.0159 2.0525 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261207927.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:31 Heat of formation + Delta-G solvation = 40.802158 kcal Electronic energy + Delta-G solvation = -16883.683656 eV Core-core repulsion = 14201.658670 eV Total energy + Delta-G solvation = -2682.024987 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 245.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.57264 -39.73204 -36.62922 -34.33912 -32.97574 -32.00697 -30.84223 -29.59407 -27.73011 -24.91933 -24.25228 -22.76279 -21.86031 -20.81865 -19.05124 -18.53305 -17.13017 -17.02004 -16.33982 -16.09734 -15.68725 -14.96887 -14.84574 -14.55611 -14.37270 -14.15011 -13.93163 -13.46248 -13.26285 -13.13540 -12.99863 -12.86946 -12.55048 -12.46731 -11.94609 -11.72905 -11.38897 -10.98991 -10.67581 -10.16956 -9.75708 -9.21065 -8.36436 -8.04288 -6.34204 0.50900 0.60129 1.37800 1.40263 1.48923 1.65721 1.96117 2.38116 3.04822 3.11232 3.47575 3.66630 3.95378 4.11886 4.12790 4.26492 4.37078 4.44459 4.64992 4.70686 4.76605 4.82137 4.90210 4.99832 5.12528 5.21859 5.42213 5.61485 5.69913 5.71458 5.97408 6.10636 6.20149 6.60137 6.69764 6.85157 6.86987 7.10691 7.39227 8.84788 Molecular weight = 245.12amu Principal moments of inertia in cm(-1) A = 0.042233 B = 0.004773 C = 0.004701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.827812 B = 5865.421047 C = 5955.309563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.025 3.975 3 Si 0.953 3.047 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.556 4.556 8 H 0.046 0.954 9 C 0.244 3.756 10 H 0.015 0.985 11 N -0.840 5.840 12 C -0.083 4.083 13 C -0.082 4.082 14 C -0.163 4.163 15 C 0.168 3.832 16 N -0.581 5.581 17 C 0.343 3.657 18 N -0.595 5.595 19 C 0.019 3.981 20 C 0.067 3.933 21 C -0.161 4.161 22 C -0.099 4.099 23 H 0.266 0.734 24 H 0.336 0.664 25 H 0.321 0.679 26 H 0.119 0.881 27 H 0.137 0.863 28 H 0.209 0.791 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.148 0.852 34 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.728 -12.046 -0.899 15.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.176 4.176 3 Si 0.779 3.221 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.596 4.596 8 H 0.064 0.936 9 C 0.134 3.866 10 H 0.033 0.967 11 N -0.367 5.367 12 C -0.085 4.085 13 C -0.101 4.101 14 C -0.185 4.185 15 C 0.072 3.928 16 N -0.292 5.292 17 C 0.046 3.954 18 N -0.318 5.318 19 C -0.110 4.110 20 C -0.056 4.056 21 C -0.182 4.182 22 C -0.118 4.118 23 H 0.075 0.925 24 H 0.148 0.852 25 H 0.131 0.869 26 H 0.137 0.863 27 H 0.155 0.845 28 H 0.226 0.774 29 H 0.116 0.884 30 H 0.115 0.885 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.165 0.835 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 9.849 -13.475 -0.263 16.693 hybrid contribution 0.189 2.812 -0.666 2.896 sum 10.037 -10.663 -0.929 14.674 Atomic orbital electron populations 1.69979 1.06960 1.27867 1.50568 1.25704 0.95601 1.02174 0.94112 0.85650 0.78543 0.79443 0.78434 1.19845 1.20929 1.19945 1.22016 0.93770 0.92465 1.51316 0.93558 1.17771 0.90613 0.89300 0.88898 0.96712 1.59486 1.16565 1.56008 1.04600 1.20213 0.97738 0.96372 0.94188 1.20747 0.94709 0.96131 0.98536 1.20749 1.02464 0.98420 0.96825 1.17463 0.91659 0.88724 0.94943 1.45854 1.38712 1.31399 1.13259 1.25174 0.92616 0.86079 0.91526 1.74249 1.15358 1.22653 1.19577 1.23245 1.00422 0.98052 0.89284 1.22928 0.92877 0.97671 0.92080 1.20774 0.98583 0.99933 0.98911 1.20915 0.98698 0.95178 0.97023 0.92491 0.85225 0.86882 0.86278 0.84503 0.77431 0.88403 0.88498 0.89300 0.89533 0.83460 0.86253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.47 12.19 21.45 0.26 -50.21 16 2 C 0.02 1.32 5.34 84.65 0.45 1.77 16 3 Si 0.95 42.31 29.54 68.60 2.03 44.34 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 7 C -0.56 -29.53 8.64 25.60 0.22 -29.31 16 8 H 0.05 2.49 7.75 -2.91 -0.02 2.47 16 9 C 0.24 12.05 2.81 43.42 0.12 12.17 16 10 H 0.01 0.83 7.97 -2.39 -0.02 0.81 16 11 N -0.84 -39.03 8.99 -174.95 -1.57 -40.60 16 12 C -0.08 -3.48 4.90 -19.84 -0.10 -3.57 16 13 C -0.08 -3.01 9.29 22.25 0.21 -2.80 16 14 C -0.16 -4.92 9.50 22.39 0.21 -4.71 16 15 C 0.17 4.78 6.64 38.17 0.25 5.04 16 16 N -0.58 -13.75 3.23 -517.07 -1.67 -15.42 16 17 C 0.34 7.52 11.59 180.45 2.09 9.61 16 18 N -0.59 -14.06 11.60 -349.12 -4.05 -18.11 16 19 C 0.02 0.36 8.05 86.70 0.70 1.05 16 20 C 0.07 1.27 6.59 86.64 0.57 1.84 16 21 C -0.16 -4.73 9.45 22.40 0.21 -4.52 16 22 C -0.10 -3.63 9.66 22.25 0.21 -3.42 16 23 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 24 H 0.34 16.76 7.82 -89.70 -0.70 16.06 16 25 H 0.32 13.87 7.41 -89.69 -0.67 13.20 16 26 H 0.12 4.28 6.70 -2.91 -0.02 4.26 16 27 H 0.14 3.37 7.32 -2.91 -0.02 3.35 16 28 H 0.21 3.42 6.79 -2.91 -0.02 3.40 16 29 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.10 1.58 8.14 -2.38 -0.02 1.56 16 31 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.15 3.27 6.60 -2.91 -0.02 3.25 16 34 H 0.12 4.31 8.03 -2.90 -0.02 4.29 16 Total: -1.00 -60.53 286.63 -0.09 -60.62 By element: Atomic # 1 Polarization: 36.47 SS G_CDS: -0.24 Total: 36.23 kcal Atomic # 6 Polarization: -22.00 SS G_CDS: 5.16 Total: -16.85 kcal Atomic # 7 Polarization: -117.31 SS G_CDS: -7.03 Total: -124.34 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Total: -60.53 -0.09 -60.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261207927.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.421 kcal (2) G-P(sol) polarization free energy of solvation -60.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds