Wall clock time and date at job start Mon Mar 30 2020 03:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99874 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00281 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00232 * 3 2 1 6 6 H 1.48503 * 109.47284 * 149.99928 * 3 2 1 7 7 C 1.37876 * 120.00355 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99840 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00339 * 179.97438 * 7 2 1 10 10 C 1.52993 * 109.47429 * 179.97438 * 9 7 2 11 11 N 1.46906 * 109.47378 * 179.97438 * 10 9 7 12 12 C 1.46898 * 110.99888 * 180.02562 * 11 10 9 13 13 C 1.50704 * 109.47041 * 179.97438 * 12 11 10 14 14 C 1.38543 * 126.21580 * 259.68872 * 13 12 11 15 15 N 1.31488 * 109.00232 * 179.87575 * 14 13 12 16 16 N 1.40037 * 108.91925 * 0.38802 * 15 14 13 17 17 C 1.36532 * 132.43612 * 179.75209 * 16 15 14 18 18 C 1.34936 * 120.66298 * 180.02562 * 17 16 15 19 19 C 1.40472 * 120.42975 * 359.97438 * 18 17 16 20 20 C 1.36066 * 119.58967 * 0.02562 * 19 18 17 21 21 C 1.37136 * 107.44233 * 359.76018 * 16 15 14 22 22 H 0.97000 * 119.99584 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.47043 * 59.99933 * 9 7 2 24 24 H 1.09004 * 109.47476 * 300.00008 * 9 7 2 25 25 H 1.09004 * 109.46862 * 60.00067 * 10 9 7 26 26 H 1.09000 * 109.47250 * 300.00090 * 10 9 7 27 27 H 1.00904 * 110.99860 * 56.05050 * 11 10 9 28 28 H 1.08997 * 109.47334 * 299.99788 * 12 11 10 29 29 H 1.08995 * 109.47296 * 60.00089 * 12 11 10 30 30 H 1.07993 * 125.49865 * 359.97438 * 14 13 12 31 31 H 1.08001 * 119.66775 * 0.02562 * 17 16 15 32 32 H 1.07996 * 119.78321 * 179.97438 * 18 17 16 33 33 H 1.08004 * 120.20316 * 179.97438 * 19 18 17 34 34 H 1.07999 * 120.38409 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6364 -0.0010 11 7 5.4907 -2.6364 -0.0022 12 6 6.0171 -4.0078 -0.0027 13 6 7.5236 -3.9676 -0.0046 14 6 8.3458 -4.1458 -1.1053 15 7 9.5999 -4.0400 -0.7245 16 7 9.6368 -3.7953 0.6539 17 6 10.6680 -3.6132 1.5300 18 6 10.4277 -3.3887 2.8386 19 6 9.1095 -3.3380 3.3214 20 6 8.0713 -3.5176 2.4605 21 6 8.3402 -3.7510 1.0983 22 1 -0.4849 0.8401 0.0004 23 1 3.8752 -0.6803 0.8889 24 1 3.8746 -0.6800 -0.8911 25 1 3.6579 -3.1504 -0.8908 26 1 3.6586 -3.1501 0.8892 27 1 5.8529 -2.1100 0.7788 28 1 5.6684 -4.5312 0.8875 29 1 5.6669 -4.5311 -0.8924 30 1 8.0108 -4.3388 -2.1136 31 1 11.6863 -3.6493 1.1719 32 1 11.2542 -3.2470 3.5192 33 1 8.9214 -3.1585 4.3697 34 1 7.0528 -3.4816 2.8180 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273086473.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:11 Heat of formation + Delta-G solvation = 77.284139 kcal Electronic energy + Delta-G solvation = -16533.925409 eV Core-core repulsion = 13853.482400 eV Total energy + Delta-G solvation = -2680.443009 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 245.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.94407 -38.30330 -37.45653 -35.14413 -33.90886 -32.10910 -31.57009 -29.71048 -26.69190 -24.75372 -24.62084 -23.34166 -22.29369 -21.39215 -18.93808 -18.18989 -17.60269 -16.75168 -16.72489 -16.52011 -16.30780 -15.55202 -15.35644 -15.00107 -14.64429 -14.33414 -14.19136 -13.48414 -13.19028 -12.92833 -12.74007 -12.66455 -12.47954 -12.02583 -11.87992 -11.68509 -11.53396 -11.40219 -11.31082 -10.76039 -10.28474 -9.27991 -8.45878 -8.28941 -6.33117 -0.12464 0.16235 1.37239 1.38075 1.38589 1.51510 1.69627 2.37418 2.46633 3.06736 3.30554 3.57708 3.71704 3.92702 3.96664 4.18442 4.23031 4.41345 4.54202 4.59933 4.60860 4.74872 4.80420 4.99301 5.04096 5.14888 5.30807 5.34061 5.50868 5.52015 5.59176 5.64519 5.96311 6.19915 6.27651 6.54186 6.58562 6.75601 7.31868 8.87710 Molecular weight = 245.12amu Principal moments of inertia in cm(-1) A = 0.032350 B = 0.004399 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.318362 B = 6362.914377 C = 6672.271246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.007 3.993 3 Si 0.953 3.047 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.249 1.249 7 C -0.533 4.533 8 H 0.034 0.966 9 C -0.004 4.004 10 C 0.086 3.914 11 N -0.691 5.691 12 C 0.148 3.852 13 C -0.265 4.265 14 C 0.087 3.913 15 N -0.358 5.358 16 N -0.284 5.284 17 C 0.084 3.916 18 C -0.149 4.149 19 C -0.070 4.070 20 C -0.138 4.138 21 C 0.097 3.903 22 H 0.267 0.733 23 H 0.018 0.982 24 H 0.018 0.982 25 H 0.058 0.942 26 H 0.020 0.980 27 H 0.336 0.664 28 H 0.035 0.965 29 H 0.081 0.919 30 H 0.207 0.793 31 H 0.188 0.812 32 H 0.196 0.804 33 H 0.174 0.826 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.257 -7.640 7.661 26.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.190 4.190 3 Si 0.776 3.224 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.172 1.172 7 C -0.571 4.571 8 H 0.052 0.948 9 C -0.042 4.042 10 C -0.042 4.042 11 N -0.323 5.323 12 C 0.019 3.981 13 C -0.276 4.276 14 C -0.089 4.089 15 N -0.182 5.182 16 N -0.051 5.051 17 C -0.040 4.040 18 C -0.170 4.170 19 C -0.093 4.093 20 C -0.157 4.157 21 C -0.023 4.023 22 H 0.076 0.924 23 H 0.036 0.964 24 H 0.037 0.963 25 H 0.077 0.923 26 H 0.038 0.962 27 H 0.154 0.846 28 H 0.053 0.947 29 H 0.100 0.900 30 H 0.224 0.776 31 H 0.205 0.795 32 H 0.213 0.787 33 H 0.191 0.809 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 25.388 -7.547 6.419 27.253 hybrid contribution -1.419 0.397 0.770 1.663 sum 23.969 -7.150 7.189 26.025 Atomic orbital electron populations 1.70062 1.08237 1.28192 1.52619 1.25966 0.95586 1.03422 0.94029 0.85623 0.79377 0.78276 0.79109 1.19470 1.20784 1.17229 1.21417 0.91886 0.93282 1.50530 0.94752 1.19435 0.93563 0.94636 0.96584 1.21646 0.86153 0.97248 0.99201 1.60596 1.07220 1.14387 1.50049 1.19988 0.87851 0.89279 1.00967 1.19904 0.95909 1.20255 0.91568 1.23998 0.89142 0.95028 1.00715 1.77763 1.21269 1.32150 0.87062 1.46424 1.06009 1.45326 1.07343 1.22192 0.92855 0.99852 0.89090 1.21398 0.99426 1.02719 0.93490 1.21663 0.91581 0.94303 1.01778 1.20878 1.02267 1.03533 0.89051 1.19744 0.85174 1.01639 0.95777 0.92433 0.96361 0.96347 0.92307 0.96168 0.84627 0.94712 0.90029 0.77621 0.79459 0.78745 0.80876 0.83390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.28 13.96 21.45 0.30 -59.98 16 2 C 0.01 0.41 5.47 84.65 0.46 0.87 16 3 Si 0.95 45.34 27.47 68.60 1.88 47.23 16 4 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 5 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 6 H -0.25 -11.07 6.54 99.48 0.65 -10.42 16 7 C -0.53 -31.33 9.66 25.60 0.25 -31.08 16 8 H 0.03 2.20 7.99 -2.91 -0.02 2.18 16 9 C 0.00 -0.21 4.30 29.84 0.13 -0.08 16 10 C 0.09 3.50 5.62 86.30 0.49 3.99 16 11 N -0.69 -23.62 6.49 -517.93 -3.36 -26.98 16 12 C 0.15 4.27 6.17 85.56 0.53 4.79 16 13 C -0.26 -7.41 5.70 -19.62 -0.11 -7.52 16 14 C 0.09 2.36 11.87 84.82 1.01 3.37 16 15 N -0.36 -10.26 12.66 -57.55 -0.73 -10.99 16 16 N -0.28 -7.12 3.90 -187.78 -0.73 -7.85 16 17 C 0.08 1.36 11.19 83.20 0.93 2.29 16 18 C -0.15 -1.55 9.98 22.05 0.22 -1.33 16 19 C -0.07 -0.89 10.07 22.31 0.22 -0.66 16 20 C -0.14 -2.71 10.09 22.39 0.23 -2.48 16 21 C 0.10 2.49 6.76 39.11 0.26 2.75 16 22 H 0.27 15.74 8.31 -92.71 -0.77 14.96 16 23 H 0.02 0.86 7.20 -2.38 -0.02 0.84 16 24 H 0.02 0.89 7.57 -2.39 -0.02 0.87 16 25 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16 26 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.34 11.05 8.72 -89.69 -0.78 10.27 16 28 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.21 4.47 8.06 -2.91 -0.02 4.45 16 31 H 0.19 1.94 8.06 -2.91 -0.02 1.91 16 32 H 0.20 0.34 8.06 -2.91 -0.02 0.32 16 33 H 0.17 1.01 8.06 -2.91 -0.02 0.99 16 34 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -74.54 294.76 2.23 -72.31 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: 0.26 Total: 11.35 kcal Atomic # 6 Polarization: -29.71 SS G_CDS: 4.61 Total: -25.10 kcal Atomic # 7 Polarization: -101.27 SS G_CDS: -4.52 Total: -105.80 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.88 Total: 47.23 kcal Total: -74.54 2.23 -72.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273086473.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.596 kcal (2) G-P(sol) polarization free energy of solvation -74.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds