Wall clock time and date at job start Mon Mar 30 2020 04:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08991 * 109.47176 * 2 1 4 4 C 1.50706 * 109.46845 * 120.00197 * 2 1 3 5 5 H 1.08000 * 119.99666 * 120.00385 * 4 2 1 6 6 C 1.37874 * 119.99978 * 299.99679 * 4 2 1 7 7 N 1.31514 * 119.99942 * 180.02562 * 6 4 2 8 8 Si 1.86808 * 119.99950 * 0.02562 * 6 4 2 9 9 H 1.48497 * 109.46958 * 89.99854 * 8 6 4 10 10 H 1.48500 * 109.47059 * 209.99583 * 8 6 4 11 11 H 1.48501 * 109.46934 * 329.99913 * 8 6 4 12 12 N 1.46896 * 109.47043 * 240.00051 * 2 1 3 13 13 C 1.46898 * 111.00137 * 85.00306 * 12 2 1 14 14 C 1.50698 * 109.47190 * 180.02562 * 13 12 2 15 15 C 1.38667 * 119.20929 * 95.02362 * 14 13 12 16 16 C 1.38207 * 119.40776 * 179.97438 * 15 14 13 17 17 C 1.39695 * 118.04226 * 359.97438 * 16 15 14 18 18 C 1.46384 * 134.31560 * 180.02562 * 17 16 15 19 19 C 1.34231 * 106.86177 * 179.97438 * 18 17 16 20 20 N 1.36917 * 109.91718 * 359.76890 * 19 18 17 21 21 H 0.96994 * 124.98678 * 180.29637 * 20 19 18 22 22 C 1.37428 * 110.02134 * 0.38564 * 20 19 18 23 23 N 1.31587 * 119.20745 * 274.99572 * 14 13 12 24 24 H 1.08994 * 109.46911 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46806 * 299.99821 * 1 2 3 26 26 H 1.08996 * 109.46939 * 59.99835 * 1 2 3 27 27 H 0.97003 * 119.99813 * 180.02562 * 7 6 4 28 28 H 1.00909 * 111.00139 * 321.04556 * 12 2 1 29 29 H 1.09001 * 109.47360 * 59.99495 * 13 12 2 30 30 H 1.08999 * 109.46896 * 299.99434 * 13 12 2 31 31 H 1.07994 * 120.29902 * 359.95261 * 15 14 13 32 32 H 1.07997 * 120.97662 * 179.97438 * 16 15 14 33 33 H 1.08000 * 126.56816 * 359.92916 * 18 17 16 34 34 H 1.08004 * 125.03936 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1380 -0.8592 3.5565 8 14 0.6248 1.2791 2.6541 9 1 -0.8027 0.8727 2.6997 10 1 0.9759 1.9950 3.9069 11 1 0.8472 2.1765 1.4920 12 7 2.0197 -0.6925 -1.1994 13 6 2.0826 0.2226 -2.3468 14 6 2.5874 -0.5218 -3.5560 15 6 1.6737 -1.0583 -4.4506 16 6 2.1322 -1.7413 -5.5611 17 6 3.5132 -1.8613 -5.7345 18 6 4.3663 -2.4873 -6.7460 19 6 5.6370 -2.2712 -6.3715 20 7 5.6641 -1.5536 -5.2057 21 1 6.4696 -1.2735 -4.7437 22 6 4.3824 -1.2904 -4.7854 23 7 3.8847 -0.6466 -3.7378 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.9034 -0.5280 4.4376 28 1 1.4496 -1.4980 -1.4100 29 1 2.7589 1.0462 -2.1182 30 1 1.0872 0.6163 -2.5525 31 1 0.6134 -0.9437 -4.2809 32 1 1.4431 -2.1696 -6.2739 33 1 4.0364 -3.0214 -7.6248 34 1 6.5088 -2.6100 -6.9115 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309734708.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:47 Heat of formation + Delta-G solvation = 55.581535 kcal Electronic energy + Delta-G solvation = -16772.615217 eV Core-core repulsion = 14091.231113 eV Total energy + Delta-G solvation = -2681.384105 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 245.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.35399 -39.28979 -37.63789 -34.58082 -33.81335 -32.30678 -30.75295 -29.57117 -27.13822 -26.17282 -24.10490 -22.48549 -22.07468 -21.53031 -19.31746 -18.84892 -17.38276 -17.06229 -16.70368 -16.12202 -15.63967 -15.48520 -15.27651 -14.61981 -14.36962 -14.10640 -14.00337 -13.82528 -13.71299 -13.04560 -12.92702 -12.78857 -12.68803 -12.33832 -11.97495 -11.45917 -11.34125 -11.19818 -10.74006 -10.22731 -9.37617 -9.02003 -8.90217 -8.25644 -6.28665 0.10441 0.44812 1.31418 1.38104 1.48385 1.84348 1.94863 2.34344 2.87787 3.08520 3.47324 3.66606 3.84037 3.96882 4.07627 4.28665 4.47106 4.50447 4.57827 4.63285 4.68680 4.75806 4.81693 4.94990 4.98891 5.05143 5.31216 5.42012 5.60663 5.63917 5.67884 6.00231 6.08799 6.49061 6.68745 6.72870 6.78289 7.20169 7.36270 8.92276 Molecular weight = 245.12amu Principal moments of inertia in cm(-1) A = 0.043854 B = 0.004675 C = 0.004416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.325071 B = 5988.368245 C = 6338.458366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.188 3.812 3 H 0.030 0.970 4 C -0.506 4.506 5 H 0.028 0.972 6 C 0.006 3.994 7 N -0.954 5.954 8 Si 0.957 3.043 9 H -0.262 1.262 10 H -0.300 1.300 11 H -0.248 1.248 12 N -0.680 5.680 13 C 0.113 3.887 14 C 0.155 3.845 15 C -0.195 4.195 16 C -0.033 4.033 17 C -0.175 4.175 18 C -0.213 4.213 19 C 0.074 3.926 20 N -0.585 5.585 21 H 0.425 0.575 22 C 0.248 3.752 23 N -0.518 5.518 24 H 0.056 0.944 25 H 0.037 0.963 26 H 0.067 0.933 27 H 0.265 0.735 28 H 0.337 0.663 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.159 0.841 32 H 0.167 0.833 33 H 0.177 0.823 34 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.657 -0.365 -24.280 24.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.079 3.921 3 H 0.047 0.953 4 C -0.544 4.544 5 H 0.046 0.954 6 C -0.190 4.190 7 N -0.595 5.595 8 Si 0.784 3.216 9 H -0.188 1.188 10 H -0.228 1.228 11 H -0.172 1.172 12 N -0.311 5.311 13 C -0.017 4.017 14 C 0.009 3.991 15 C -0.216 4.216 16 C -0.059 4.059 17 C -0.183 4.183 18 C -0.238 4.238 19 C -0.052 4.052 20 N -0.193 5.193 21 H 0.264 0.736 22 C 0.015 3.985 23 N -0.232 5.232 24 H 0.075 0.925 25 H 0.055 0.945 26 H 0.086 0.914 27 H 0.074 0.926 28 H 0.154 0.846 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.177 0.823 32 H 0.185 0.815 33 H 0.194 0.806 34 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 2.095 0.092 -23.332 23.426 hybrid contribution -1.150 0.308 0.467 1.279 sum 0.945 0.400 -22.865 22.888 Atomic orbital electron populations 1.22705 0.98721 1.01671 1.00373 1.19435 0.90508 0.94033 0.88165 0.95259 1.21273 1.30272 1.12435 0.90444 0.95368 1.25870 0.97672 1.00304 0.95167 1.70065 1.48105 1.42796 0.98567 0.85735 0.79017 0.79587 0.77252 1.18828 1.22789 1.17181 1.60353 1.58612 1.09409 1.02706 1.20800 0.99483 0.94326 0.87078 1.20925 0.86960 0.95845 0.95391 1.21948 1.01539 1.02057 0.96082 1.21294 0.93364 0.94656 0.96587 1.20417 0.94611 1.04532 0.98716 1.22013 0.91162 1.08684 1.01946 1.22678 1.00648 0.95354 0.86515 1.41825 1.05231 1.49025 1.23172 0.73622 1.18849 0.87353 0.99172 0.93166 1.66141 1.17008 1.19254 1.20844 0.92467 0.94459 0.91385 0.92605 0.84551 0.91652 0.91451 0.82350 0.81533 0.80554 0.76047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.07 8.64 71.98 0.62 -6.45 16 2 C 0.19 8.94 2.17 44.17 0.10 9.04 16 3 H 0.03 1.43 6.86 -2.39 -0.02 1.42 16 4 C -0.51 -30.20 9.42 25.60 0.24 -29.96 16 5 H 0.03 1.92 8.06 -2.91 -0.02 1.89 16 6 C 0.01 0.37 5.45 84.65 0.46 0.83 16 7 N -0.95 -61.65 13.96 21.45 0.30 -61.35 16 8 Si 0.96 45.54 24.37 68.60 1.67 47.21 16 9 H -0.26 -11.66 6.87 99.48 0.68 -10.98 16 10 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 11 H -0.25 -10.86 6.53 99.48 0.65 -10.21 16 12 N -0.68 -29.06 6.22 -499.47 -3.11 -32.17 16 13 C 0.11 3.96 5.77 85.56 0.49 4.45 16 14 C 0.16 5.19 6.29 42.70 0.27 5.46 16 15 C -0.19 -5.05 9.69 22.36 0.22 -4.83 16 16 C -0.03 -0.76 10.22 22.61 0.23 -0.53 16 17 C -0.18 -4.52 6.39 -20.18 -0.13 -4.65 16 18 C -0.21 -3.79 11.09 23.48 0.26 -3.53 16 19 C 0.07 1.10 11.82 82.98 0.98 2.08 16 20 N -0.59 -12.93 6.05 -192.32 -1.16 -14.09 16 21 H 0.43 7.78 8.96 -92.71 -0.83 6.95 16 22 C 0.25 7.62 8.43 133.93 1.13 8.75 16 23 N -0.52 -18.99 10.29 -180.81 -1.86 -20.85 16 24 H 0.06 2.25 8.13 -2.39 -0.02 2.23 16 25 H 0.04 1.56 3.27 -2.39 -0.01 1.55 16 26 H 0.07 2.19 7.45 -2.39 -0.02 2.17 16 27 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 28 H 0.34 13.49 8.46 -89.69 -0.76 12.74 16 29 H 0.06 2.49 8.06 -2.39 -0.02 2.47 16 30 H 0.07 1.96 7.32 -2.39 -0.02 1.94 16 31 H 0.16 3.16 8.05 -2.91 -0.02 3.14 16 32 H 0.17 2.52 8.06 -2.91 -0.02 2.49 16 33 H 0.18 1.98 8.06 -2.91 -0.02 1.95 16 34 H 0.22 0.99 8.06 -2.91 -0.02 0.97 16 Total: -1.00 -78.43 283.87 0.18 -78.25 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: -0.54 Total: 22.33 kcal Atomic # 6 Polarization: -24.21 SS G_CDS: 4.87 Total: -19.34 kcal Atomic # 7 Polarization: -122.62 SS G_CDS: -5.83 Total: -128.45 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.67 Total: 47.21 kcal Total: -78.43 0.18 -78.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309734708.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.831 kcal (2) G-P(sol) polarization free energy of solvation -78.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds