Wall clock time and date at job start Mon Mar 30 2020 04:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47711 * 2 1 4 4 C 1.50697 * 109.47323 * 239.99128 * 2 1 3 5 5 H 1.08002 * 120.00599 * 240.00782 * 4 2 1 6 6 C 1.37880 * 119.99675 * 60.00315 * 4 2 1 7 7 N 1.31517 * 120.00210 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 120.00019 * 0.02562 * 6 4 2 9 9 H 1.48503 * 109.46845 * 269.99914 * 8 6 4 10 10 H 1.48503 * 109.47399 * 29.99403 * 8 6 4 11 11 H 1.48498 * 109.47295 * 150.00010 * 8 6 4 12 12 N 1.46904 * 109.46652 * 119.99575 * 2 1 3 13 13 C 1.46892 * 111.00226 * 274.99776 * 12 2 1 14 14 C 1.50703 * 109.47277 * 180.02562 * 13 12 2 15 15 C 1.38246 * 120.97615 * 259.99956 * 14 13 12 16 16 C 1.38623 * 119.40840 * 179.97438 * 15 14 13 17 17 N 1.31617 * 121.58547 * 359.97438 * 16 15 14 18 18 C 1.32631 * 121.67347 * 0.02562 * 17 16 15 19 19 N 1.37425 * 133.20162 * 179.97438 * 18 17 16 20 20 H 0.96997 * 124.98709 * 359.97438 * 19 18 17 21 21 C 1.36918 * 110.02181 * 179.97438 * 19 18 17 22 22 C 1.34224 * 109.92560 * 0.02562 * 21 19 18 23 23 C 1.39647 * 120.98156 * 79.72432 * 14 13 12 24 24 H 1.08998 * 109.46841 * 60.00163 * 1 2 3 25 25 H 1.09000 * 109.47280 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47206 * 300.00454 * 1 2 3 27 27 H 0.96998 * 119.99640 * 180.02562 * 7 6 4 28 28 H 1.00906 * 111.00236 * 38.95525 * 12 2 1 29 29 H 1.09002 * 109.47388 * 300.00494 * 13 12 2 30 30 H 1.09003 * 109.47167 * 60.00638 * 13 12 2 31 31 H 1.07995 * 120.29896 * 359.97438 * 15 14 13 32 32 H 1.07995 * 119.20652 * 179.97438 * 16 15 14 33 33 H 1.08002 * 125.03655 * 180.02562 * 21 19 18 34 34 H 1.07997 * 126.57109 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6532 -1.5887 -1.1312 6 6 1.6993 -0.2396 -2.4827 7 7 2.1381 -0.8594 -3.5564 8 14 0.6260 1.2796 -2.6542 9 1 -0.8019 0.8743 -2.6994 10 1 0.8492 2.1772 -1.4924 11 1 0.9773 1.9950 -3.9072 12 7 2.0196 -0.6924 1.1996 13 6 2.0824 0.2226 2.3469 14 6 2.5883 -0.5214 3.5558 15 6 1.7159 -0.9830 4.5238 16 6 2.2166 -1.6641 5.6225 17 7 3.5061 -1.8840 5.7682 18 6 4.3897 -1.4649 4.8723 19 7 5.7579 -1.5593 4.7849 20 1 6.3284 -1.9929 5.4387 21 6 6.1975 -0.9513 3.6396 22 6 5.1549 -0.4514 2.9580 23 6 3.9516 -0.7699 3.7284 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.9041 -0.5278 -4.4374 28 1 1.4494 -1.4979 1.4102 29 1 2.7588 1.0462 2.1182 30 1 1.0870 0.6164 2.5526 31 1 0.6538 -0.8145 4.4251 32 1 1.5322 -2.0228 6.3769 33 1 7.2301 -0.8841 3.3304 34 1 5.1955 0.0805 2.0189 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381449591.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:42 Heat of formation + Delta-G solvation = 79.217256 kcal Electronic energy + Delta-G solvation = -17057.195882 eV Core-core repulsion = 14376.836699 eV Total energy + Delta-G solvation = -2680.359183 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 245.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.32263 -37.82699 -36.38587 -33.58481 -31.93811 -30.08504 -29.53906 -28.56587 -25.34893 -24.76322 -22.49912 -22.06683 -20.27092 -20.17378 -17.94210 -16.69763 -16.39169 -15.59920 -14.99017 -14.91457 -14.77716 -14.17353 -13.75263 -13.10279 -12.96514 -12.69949 -12.57407 -12.24700 -12.10094 -11.96822 -11.81762 -11.23259 -10.97480 -10.53395 -10.11917 -9.98554 -9.50382 -9.25870 -9.12002 -8.55836 -8.28957 -7.86785 -7.41871 -6.03163 -4.00465 1.15637 1.55423 2.88642 2.91886 3.26098 3.35693 3.38863 4.04344 4.41179 4.63531 4.85253 4.91304 5.05565 5.26486 5.28249 5.36481 5.53454 5.72221 5.82210 5.93612 6.08161 6.09891 6.20363 6.29792 6.50020 6.53775 6.66189 6.70568 6.80141 7.11216 7.13899 7.41240 7.70872 7.89623 8.15799 8.30086 8.70485 9.09004 9.59312 11.10409 Molecular weight = 245.12amu Principal moments of inertia in cm(-1) A = 0.032567 B = 0.005694 C = 0.005120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.567368 B = 4916.693363 C = 5467.357032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.183 3.817 3 H 0.035 0.965 4 C -0.496 4.496 5 H 0.082 0.918 6 C 0.067 3.933 7 N -0.901 5.901 8 Si 0.886 3.114 9 H -0.281 1.281 10 H -0.269 1.269 11 H -0.297 1.297 12 N -0.661 5.661 13 C 0.093 3.907 14 C 0.022 3.978 15 C -0.208 4.208 16 C 0.135 3.865 17 N -0.509 5.509 18 C 0.279 3.721 19 N -0.587 5.587 20 H 0.415 0.585 21 C 0.043 3.957 22 C -0.167 4.167 23 C -0.130 4.130 24 H 0.045 0.955 25 H 0.054 0.946 26 H 0.026 0.974 27 H 0.263 0.737 28 H 0.332 0.668 29 H 0.079 0.921 30 H 0.032 0.968 31 H 0.132 0.868 32 H 0.156 0.844 33 H 0.175 0.825 34 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.086 1.500 16.720 17.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.074 3.926 3 H 0.052 0.948 4 C -0.535 4.535 5 H 0.100 0.900 6 C -0.134 4.134 7 N -0.540 5.540 8 Si 0.717 3.283 9 H -0.208 1.208 10 H -0.195 1.195 11 H -0.225 1.225 12 N -0.291 5.291 13 C -0.036 4.036 14 C 0.013 3.987 15 C -0.230 4.230 16 C -0.030 4.030 17 N -0.224 5.224 18 C 0.046 3.954 19 N -0.194 5.194 20 H 0.252 0.748 21 C -0.082 4.082 22 C -0.192 4.192 23 C -0.138 4.138 24 H 0.064 0.936 25 H 0.073 0.927 26 H 0.045 0.955 27 H 0.073 0.927 28 H 0.150 0.850 29 H 0.098 0.902 30 H 0.050 0.950 31 H 0.150 0.850 32 H 0.173 0.827 33 H 0.193 0.807 34 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 4.239 1.106 17.106 17.658 hybrid contribution -1.696 1.070 -0.486 2.063 sum 2.543 2.175 16.620 16.953 Atomic orbital electron populations 1.22869 1.01515 1.00957 0.98898 1.19673 0.88556 0.95140 0.89199 0.94755 1.20970 1.31126 1.13735 0.87645 0.90011 1.24939 0.96004 0.96601 0.95874 1.69885 1.45944 1.40363 0.97821 0.86901 0.80589 0.83984 0.76865 1.20820 1.19481 1.22457 1.60650 1.58103 1.08407 1.01910 1.20917 0.98698 0.95382 0.88601 1.19870 0.91035 0.93330 0.94475 1.21766 1.00524 1.04106 0.96608 1.22294 0.89520 0.94826 0.96355 1.66425 1.02571 1.23355 1.30002 1.18426 0.85195 0.98663 0.93132 1.41490 1.04122 1.51642 1.22165 0.74827 1.21836 0.99665 0.99472 0.87200 1.21808 0.89575 1.06485 1.01319 1.19663 0.93892 1.03667 0.96570 0.93621 0.92670 0.95462 0.92715 0.85044 0.90233 0.95011 0.84987 0.82668 0.80747 0.82721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.88 8.64 37.16 0.32 -3.56 16 2 C 0.18 4.24 2.17 -68.86 -0.15 4.09 16 3 H 0.03 0.82 6.86 -51.93 -0.36 0.47 16 4 C -0.50 -13.89 9.42 -34.44 -0.32 -14.22 16 5 H 0.08 2.54 8.06 -52.49 -0.42 2.12 16 6 C 0.07 1.92 5.45 -17.82 -0.10 1.82 16 7 N -0.90 -27.58 13.96 55.43 0.77 -26.80 16 8 Si 0.89 21.77 24.37 -169.99 -4.14 17.62 16 9 H -0.28 -6.75 6.87 56.52 0.39 -6.36 16 10 H -0.27 -6.32 6.53 56.52 0.37 -5.95 16 11 H -0.30 -7.34 7.11 56.52 0.40 -6.93 16 12 N -0.66 -13.33 6.22 -109.22 -0.68 -14.01 16 13 C 0.09 1.57 5.62 -4.98 -0.03 1.54 16 14 C 0.02 0.35 5.45 -104.09 -0.57 -0.22 16 15 C -0.21 -2.82 9.77 -39.44 -0.39 -3.20 16 16 C 0.14 1.77 11.14 -17.50 -0.20 1.57 16 17 N -0.51 -7.67 10.39 -12.27 -0.13 -7.80 16 18 C 0.28 4.26 8.43 -155.69 -1.31 2.95 16 19 N -0.59 -7.05 6.05 -12.14 -0.07 -7.12 16 20 H 0.41 3.69 8.96 -40.82 -0.37 3.32 16 21 C 0.04 0.49 11.82 -16.70 -0.20 0.30 16 22 C -0.17 -2.45 11.00 -37.72 -0.41 -2.87 16 23 C -0.13 -2.11 6.18 -105.11 -0.65 -2.76 16 24 H 0.05 1.02 3.27 -51.93 -0.17 0.85 16 25 H 0.05 1.13 8.13 -51.93 -0.42 0.71 16 26 H 0.03 0.49 7.45 -51.93 -0.39 0.10 16 27 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 28 H 0.33 6.49 8.46 -39.29 -0.33 6.16 16 29 H 0.08 1.36 8.06 -51.93 -0.42 0.94 16 30 H 0.03 0.50 7.34 -51.93 -0.38 0.12 16 31 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 32 H 0.16 1.47 8.06 -52.49 -0.42 1.05 16 33 H 0.18 1.31 8.06 -52.49 -0.42 0.88 16 34 H 0.16 2.31 8.06 -52.49 -0.42 1.88 16 LS Contribution 283.73 15.07 4.28 4.28 Total: -1.00 -32.65 283.73 -8.10 -40.75 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -4.13 Total: 7.64 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: -4.00 Total: -14.56 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: -0.11 Total: -55.73 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.14 Total: 17.62 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -32.65 -8.10 -40.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381449591.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.970 kcal (2) G-P(sol) polarization free energy of solvation -32.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds