Wall clock time and date at job start Mon Mar 30 2020 04:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 114.00043 * 2 1 4 4 C 1.52998 * 109.47316 * 180.02562 * 3 2 1 5 5 O 1.42905 * 113.38079 * 313.07999 * 4 3 2 6 6 C 1.53506 * 114.17302 * 180.02562 * 4 3 2 7 7 N 1.47486 * 87.93221 * 220.32775 * 6 4 3 8 8 C 1.46902 * 110.99695 * 138.70374 * 7 6 4 9 9 C 1.53007 * 109.46666 * 170.00221 * 8 7 6 10 10 O 1.42897 * 109.47119 * 64.99513 * 9 8 7 11 11 C 1.42908 * 113.99532 * 179.97438 * 10 9 8 12 12 C 1.50700 * 109.46730 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00141 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99790 * 180.02562 * 12 11 10 15 15 N 1.31515 * 119.99649 * 179.97438 * 14 12 11 16 16 Si 1.86802 * 119.99959 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.47240 * 89.99800 * 16 14 12 18 18 H 1.48497 * 109.46698 * 209.99869 * 16 14 12 19 19 H 1.48501 * 109.46969 * 330.00032 * 16 14 12 20 20 C 1.47474 * 87.83457 * 27.00875 * 7 6 4 21 21 H 1.09001 * 109.47126 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.46779 * 299.99350 * 1 2 3 23 23 H 1.09002 * 109.47374 * 60.00027 * 1 2 3 24 24 H 1.08994 * 109.47292 * 60.00024 * 3 2 1 25 25 H 1.09007 * 109.47287 * 300.00221 * 3 2 1 26 26 H 0.96706 * 113.99595 * 46.92515 * 5 4 3 27 27 H 1.09000 * 113.48168 * 105.56309 * 6 4 3 28 28 H 1.08999 * 113.47579 * 335.09413 * 6 4 3 29 29 H 1.08998 * 109.47140 * 289.99304 * 8 7 6 30 30 H 1.08997 * 109.47636 * 49.99763 * 8 7 6 31 31 H 1.09007 * 109.46731 * 184.99736 * 9 8 7 32 32 H 1.09002 * 109.46904 * 304.99282 * 9 8 7 33 33 H 1.09000 * 109.47218 * 300.00161 * 11 10 9 34 34 H 1.09002 * 109.46647 * 60.00499 * 11 10 9 35 35 H 0.97005 * 119.99634 * 180.02562 * 15 14 12 36 36 H 1.09008 * 113.47654 * 87.75975 * 20 7 6 37 37 H 1.09003 * 113.47610 * 218.16168 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 8 4.0305 0.2466 0.9571 6 6 4.2726 2.5311 -0.0001 7 7 5.2323 1.9454 -0.9546 8 6 5.5801 2.9078 -2.0087 9 6 6.7521 2.3644 -2.8287 10 8 6.3436 1.1807 -3.5171 11 6 7.3699 0.5903 -4.3173 12 6 6.8315 -0.6438 -4.9941 13 1 5.8080 -0.9467 -4.8300 14 6 7.6458 -1.3863 -5.8229 15 7 7.1761 -2.4636 -6.4131 16 14 9.4164 -0.8628 -6.1061 17 1 10.2900 -1.5003 -5.0884 18 1 9.8467 -1.2860 -7.4629 19 1 9.5202 0.6142 -5.9921 20 6 4.1542 1.0423 -1.3983 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.6887 1.8463 0.8899 25 1 1.6886 1.8464 -0.8900 26 1 3.5644 -0.6007 0.9549 27 1 4.7168 2.7827 0.9630 28 1 3.6856 3.3477 -0.4204 29 1 4.7199 3.0591 -2.6607 30 1 5.8635 3.8573 -1.5547 31 1 7.0678 3.1154 -3.5529 32 1 7.5829 2.1294 -2.1633 33 1 7.6980 1.3046 -5.0724 34 1 8.2138 0.3185 -3.6831 35 1 7.7491 -2.9861 -6.9959 36 1 3.5355 1.4616 -2.1919 37 1 4.4981 0.0322 -1.6212 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385200442.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:54 Heat of formation + Delta-G solvation = -125.822687 kcal Electronic energy + Delta-G solvation = -18198.178793 eV Core-core repulsion = 15169.326740 eV Total energy + Delta-G solvation = -3028.852053 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 245.146 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.60652 -38.87713 -38.34098 -36.46787 -34.90242 -32.59614 -30.35124 -29.26716 -27.21132 -26.96343 -25.14934 -23.96388 -22.28406 -20.93898 -19.07617 -18.06826 -17.70118 -17.44126 -17.26662 -16.79181 -16.53596 -16.07271 -15.85275 -15.48447 -14.89835 -14.74874 -14.53994 -14.00876 -13.84228 -13.55999 -13.31879 -13.04604 -12.89739 -12.56314 -12.35852 -12.19510 -11.97466 -11.83424 -11.55692 -11.36901 -10.94944 -10.83223 -10.62961 -10.32978 -9.81682 -8.39047 -6.46703 1.31336 1.34586 1.45324 2.27845 2.60110 2.81676 2.93562 3.11106 3.18489 3.45838 3.85787 4.00865 4.05157 4.28442 4.36309 4.37584 4.44945 4.51243 4.52950 4.57530 4.62878 4.65499 4.69225 4.83789 4.86622 4.87073 4.99905 5.02201 5.37758 5.42242 5.92592 6.05527 6.13166 6.56687 6.74899 6.75525 7.17822 8.78205 Molecular weight = 245.15amu Principal moments of inertia in cm(-1) A = 0.026764 B = 0.004997 C = 0.004457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.913275 B = 5601.636266 C = 6280.735271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.417 6.417 3 C 0.051 3.949 4 C 0.108 3.892 5 O -0.543 6.543 6 C 0.021 3.979 7 N -0.483 5.483 8 C 0.027 3.973 9 C 0.054 3.946 10 O -0.402 6.402 11 C 0.181 3.819 12 C -0.544 4.544 13 H 0.028 0.972 14 C 0.014 3.986 15 N -0.942 5.942 16 Si 0.956 3.044 17 H -0.262 1.262 18 H -0.270 1.270 19 H -0.246 1.246 20 C -0.011 4.011 21 H 0.094 0.906 22 H 0.058 0.942 23 H 0.049 0.951 24 H 0.081 0.919 25 H 0.072 0.928 26 H 0.392 0.608 27 H 0.100 0.900 28 H 0.112 0.888 29 H 0.055 0.945 30 H 0.119 0.881 31 H 0.060 0.940 32 H 0.043 0.957 33 H 0.013 0.987 34 H 0.003 0.997 35 H 0.273 0.727 36 H 0.078 0.922 37 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.153 13.460 14.048 21.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.336 6.336 3 C -0.026 4.026 4 C 0.066 3.934 5 O -0.351 6.351 6 C -0.107 4.107 7 N -0.205 5.205 8 C -0.101 4.101 9 C -0.023 4.023 10 O -0.321 6.321 11 C 0.105 3.895 12 C -0.581 4.581 13 H 0.047 0.953 14 C -0.184 4.184 15 N -0.581 5.581 16 Si 0.777 3.223 17 H -0.187 1.187 18 H -0.195 1.195 19 H -0.169 1.169 20 C -0.140 4.140 21 H 0.112 0.888 22 H 0.077 0.923 23 H 0.067 0.933 24 H 0.099 0.901 25 H 0.091 0.909 26 H 0.241 0.759 27 H 0.119 0.881 28 H 0.130 0.870 29 H 0.074 0.926 30 H 0.137 0.863 31 H 0.078 0.922 32 H 0.062 0.938 33 H 0.030 0.970 34 H 0.021 0.979 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.115 13.319 14.276 21.547 hybrid contribution -0.389 -0.318 -1.074 1.186 sum -9.504 13.001 13.202 20.824 Atomic orbital electron populations 1.22938 0.78863 1.03914 1.01088 1.87776 1.22056 1.28152 1.95663 1.23099 0.91403 0.85533 1.02565 1.22365 0.90789 0.92087 0.88149 1.86407 1.62514 1.28484 1.57651 1.24028 0.93155 0.94305 0.99232 1.68887 1.28005 1.12416 1.11219 1.22786 0.97819 0.96269 0.93270 1.22646 0.97702 0.87407 0.94500 1.87867 1.38854 1.41858 1.63551 1.20273 0.87636 0.92200 0.89374 1.21135 0.99128 1.09579 1.28292 0.95340 1.25833 1.04144 0.94223 0.94220 1.70033 1.38982 1.17542 1.31560 0.85604 0.77872 0.80291 0.78543 1.18688 1.19500 1.16927 1.24468 0.92955 0.99154 0.97470 0.88789 0.92348 0.93284 0.90126 0.90941 0.75851 0.88150 0.87008 0.92636 0.86322 0.92171 0.93843 0.96961 0.97924 0.91773 0.90413 0.93221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 113.37 1.25 1.66 16 2 O -0.42 -9.26 9.85 -136.75 -1.35 -10.61 16 3 C 0.05 0.98 5.68 71.98 0.41 1.39 16 4 C 0.11 2.76 1.82 -10.45 -0.02 2.74 16 5 O -0.54 -15.81 13.55 -136.75 -1.85 -17.67 16 6 C 0.02 0.46 7.11 83.57 0.59 1.06 16 7 N -0.48 -15.02 6.31 -928.24 -5.85 -20.87 16 8 C 0.03 0.75 5.28 86.31 0.46 1.20 16 9 C 0.05 1.95 6.28 71.98 0.45 2.40 16 10 O -0.40 -19.52 9.66 -148.98 -1.44 -20.96 16 11 C 0.18 9.54 4.76 71.24 0.34 9.88 16 12 C -0.54 -34.30 9.99 25.60 0.26 -34.04 16 13 H 0.03 2.02 8.06 -2.91 -0.02 1.99 16 14 C 0.01 0.84 5.47 84.66 0.46 1.30 16 15 N -0.94 -60.58 13.96 21.45 0.30 -60.28 16 16 Si 0.96 44.75 27.47 68.60 1.88 46.63 16 17 H -0.26 -11.77 7.11 99.48 0.71 -11.07 16 18 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 19 H -0.25 -10.62 6.54 99.48 0.65 -9.96 16 20 C -0.01 -0.36 6.50 83.57 0.54 0.18 16 21 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 22 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 23 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 24 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.07 1.21 7.90 -2.38 -0.02 1.19 16 26 H 0.39 9.82 8.24 -74.05 -0.61 9.21 16 27 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.11 1.67 7.87 -2.39 -0.02 1.66 16 29 H 0.06 1.50 7.30 -2.39 -0.02 1.48 16 30 H 0.12 2.37 8.08 -2.39 -0.02 2.35 16 31 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 32 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.01 0.63 7.20 -2.39 -0.02 0.61 16 34 H 0.00 0.16 7.57 -2.39 -0.02 0.14 16 35 H 0.27 16.08 8.31 -92.70 -0.77 15.31 16 36 H 0.08 2.43 7.21 -2.38 -0.02 2.41 16 37 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -77.57 308.33 -3.19 -80.76 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: 0.38 Total: 15.23 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: 4.74 Total: -12.24 kcal Atomic # 7 Polarization: -75.59 SS G_CDS: -5.56 Total: -81.15 kcal Atomic # 8 Polarization: -44.60 SS G_CDS: -4.64 Total: -49.24 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.88 Total: 46.63 kcal Total: -77.57 -3.19 -80.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385200442.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.065 kcal (2) G-P(sol) polarization free energy of solvation -77.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds