Wall clock time and date at job start Mon Mar 30 2020 04:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46896 * 109.47233 * 2 1 4 4 C 1.46899 * 111.00126 * 291.89365 * 3 2 1 5 5 C 1.50701 * 109.46778 * 74.88994 * 4 3 2 6 6 H 1.07995 * 120.00280 * 4.40174 * 5 4 3 7 7 C 1.37882 * 119.99667 * 184.39653 * 5 4 3 8 8 N 1.31515 * 120.00046 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99963 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47116 * 89.99603 * 9 7 5 11 11 H 1.48496 * 109.47120 * 209.99828 * 9 7 5 12 12 H 1.48503 * 109.46822 * 329.99995 * 9 7 5 13 13 C 1.46898 * 110.99932 * 167.93597 * 3 2 1 14 14 C 1.50694 * 109.47644 * 298.79997 * 13 3 2 15 15 C 1.38389 * 120.85624 * 267.27463 * 14 13 3 16 16 C 1.38309 * 119.31427 * 180.02562 * 15 14 13 17 17 N 1.31945 * 121.09578 * 359.97438 * 16 15 14 18 18 C 1.31660 * 121.88715 * 0.02562 * 17 16 15 19 19 C 1.39630 * 120.55548 * 359.97438 * 18 17 16 20 20 C 1.43195 * 120.56916 * 180.02562 * 19 18 17 21 21 N 3.14651 * 137.67583 * 185.16154 * 2 1 3 22 22 H 1.09001 * 109.47200 * 187.78730 * 1 2 3 23 23 H 1.08997 * 109.47219 * 307.78954 * 1 2 3 24 24 H 1.08995 * 109.46584 * 67.78888 * 1 2 3 25 25 H 1.08998 * 109.47093 * 239.99767 * 2 1 3 26 26 H 1.08998 * 109.46675 * 119.99971 * 2 1 3 27 27 H 1.08996 * 109.47232 * 194.89261 * 4 3 2 28 28 H 1.09002 * 109.47093 * 314.89593 * 4 3 2 29 29 H 0.97003 * 119.99980 * 180.02562 * 8 7 5 30 30 H 1.09005 * 109.46962 * 178.79659 * 13 3 2 31 31 H 1.09000 * 109.46785 * 58.80035 * 13 3 2 32 32 H 1.08004 * 120.34594 * 0.04591 * 15 14 13 33 33 H 1.08003 * 119.45166 * 179.72077 * 16 15 14 34 34 H 1.08006 * 119.72834 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7131 2.0518 -1.2725 5 6 0.2463 2.3945 -1.3192 6 1 -0.3797 2.2071 -0.4595 7 6 -0.2963 2.9476 -2.4598 8 7 0.4662 3.1765 -3.5066 9 14 -2.1143 3.3732 -2.5175 10 1 -2.3115 4.7677 -2.0466 11 1 -2.6081 3.2473 -3.9123 12 1 -2.8685 2.4430 -1.6394 13 6 3.4596 1.4342 0.2866 14 6 3.7200 0.8554 1.6534 15 6 3.7652 1.6690 2.7719 16 6 4.0070 1.1041 4.0110 17 7 4.1941 -0.1954 4.1426 18 6 4.1607 -1.0110 3.1096 19 6 3.9223 -0.5196 1.8246 20 6 3.8853 -1.4065 0.7009 21 7 3.8564 -2.1100 -0.1906 22 1 -0.3634 -1.0182 0.1392 23 1 -0.3633 0.6297 0.8121 24 1 -0.3632 0.3885 -0.9514 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.3025 2.9649 -1.3555 28 1 1.9570 1.3854 -2.0999 29 1 0.0845 3.5659 -4.3088 30 1 3.8003 2.4693 0.2595 31 1 3.9992 0.8544 -0.4622 32 1 3.6130 2.7342 2.6784 33 1 4.0473 1.7376 4.8848 34 1 4.3190 -2.0692 3.2573 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592071634.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:47 Heat of formation + Delta-G solvation = 55.289931 kcal Electronic energy + Delta-G solvation = -17328.951419 eV Core-core repulsion = 14647.554669 eV Total energy + Delta-G solvation = -2681.396750 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 245.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.56723 -38.91137 -37.64300 -35.04203 -33.94684 -32.57614 -31.49570 -29.51071 -26.92824 -25.46993 -24.27139 -23.39392 -21.66519 -19.87222 -18.63357 -17.74172 -17.29600 -17.04242 -16.47286 -15.60013 -15.48795 -15.35102 -15.09700 -14.48180 -14.29197 -14.19875 -14.14976 -13.75871 -13.47168 -13.17549 -13.03047 -12.88658 -12.58432 -12.50264 -12.28561 -12.09587 -11.45728 -11.18459 -10.72563 -10.58468 -10.51596 -10.10922 -9.20854 -8.17641 -6.22589 -0.42974 0.17831 1.42778 1.43214 1.50030 1.54049 1.89058 2.41112 2.71179 2.80612 3.15192 3.25613 3.50214 3.53596 3.67830 4.06703 4.16323 4.23030 4.40534 4.49009 4.58684 4.66562 4.79691 4.82209 4.92791 5.03453 5.13437 5.23871 5.28751 5.59672 5.61224 5.69934 6.03806 6.19870 6.31246 6.49850 6.87914 6.88734 7.42521 8.93556 Molecular weight = 245.12amu Principal moments of inertia in cm(-1) A = 0.031339 B = 0.006037 C = 0.005717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.234392 B = 4636.798947 C = 4896.599683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.064 3.936 3 N -0.523 5.523 4 C 0.207 3.793 5 C -0.506 4.506 6 H 0.080 0.920 7 C -0.002 4.002 8 N -0.939 5.939 9 Si 0.962 3.038 10 H -0.271 1.271 11 H -0.289 1.289 12 H -0.262 1.262 13 C 0.077 3.923 14 C 0.012 3.988 15 C -0.148 4.148 16 C 0.139 3.861 17 N -0.497 5.497 18 C 0.161 3.839 19 C -0.098 4.098 20 C 0.273 3.727 21 N -0.453 5.453 22 H 0.053 0.947 23 H 0.059 0.941 24 H 0.061 0.939 25 H -0.003 1.003 26 H 0.075 0.925 27 H 0.011 0.989 28 H -0.042 1.042 29 H 0.262 0.738 30 H 0.103 0.897 31 H 0.020 0.980 32 H 0.166 0.834 33 H 0.202 0.798 34 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.647 -3.448 16.035 17.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.064 4.064 3 N -0.248 5.248 4 C 0.081 3.919 5 C -0.544 4.544 6 H 0.098 0.902 7 C -0.199 4.199 8 N -0.580 5.580 9 Si 0.787 3.213 10 H -0.197 1.197 11 H -0.215 1.215 12 H -0.186 1.186 13 C -0.050 4.050 14 C 0.002 3.998 15 C -0.168 4.168 16 C -0.017 4.017 17 N -0.205 5.205 18 C 0.001 3.999 19 C -0.104 4.104 20 C -0.042 4.042 21 N -0.129 5.129 22 H 0.072 0.928 23 H 0.078 0.922 24 H 0.080 0.920 25 H 0.016 0.984 26 H 0.093 0.907 27 H 0.029 0.971 28 H -0.025 1.025 29 H 0.070 0.930 30 H 0.121 0.879 31 H 0.038 0.962 32 H 0.184 0.816 33 H 0.219 0.781 34 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 6.511 -4.552 15.681 17.578 hybrid contribution -0.462 0.419 -2.211 2.297 sum 6.049 -4.133 13.470 15.333 Atomic orbital electron populations 1.21987 0.94492 1.00136 1.03380 1.22114 0.97333 0.88962 0.98013 1.62283 1.11637 1.15529 1.35325 1.19474 0.96856 0.91982 0.83594 1.21610 0.94363 1.38889 0.99519 0.90228 1.25874 1.02655 0.96059 0.95328 1.70097 1.37625 1.45659 1.04661 0.85482 0.79702 0.79030 0.77081 1.19691 1.21546 1.18588 1.21231 0.89998 1.01914 0.91897 1.20317 0.91569 0.91512 0.96405 1.22278 1.00174 1.02771 0.91602 1.23628 0.89315 0.90933 0.97829 1.67892 1.14489 1.05685 1.32437 1.23182 0.90711 1.01277 0.84749 1.17137 1.11590 0.90930 0.90766 1.25659 0.92618 0.92909 0.92986 1.81280 1.10263 1.11095 1.10220 0.92767 0.92158 0.92028 0.98445 0.90726 0.97056 1.02454 0.92973 0.87912 0.96151 0.81613 0.78096 0.79590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.69 8.49 71.98 0.61 -5.08 16 2 C 0.06 2.55 4.26 86.31 0.37 2.92 16 3 N -0.52 -21.62 4.54 -905.38 -4.11 -25.73 16 4 C 0.21 10.72 4.74 85.56 0.41 11.12 16 5 C -0.51 -27.37 6.67 25.60 0.17 -27.20 16 6 H 0.08 4.15 5.79 -2.91 -0.02 4.13 16 7 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 8 N -0.94 -56.21 13.29 21.45 0.28 -55.92 16 9 Si 0.96 43.56 29.54 68.60 2.03 45.59 16 10 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 11 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 12 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 13 C 0.08 2.58 4.93 85.56 0.42 3.00 16 14 C 0.01 0.32 4.90 -19.40 -0.10 0.22 16 15 C -0.15 -2.78 9.79 22.32 0.22 -2.56 16 16 C 0.14 2.11 11.17 84.69 0.95 3.06 16 17 N -0.50 -9.21 10.34 -194.70 -2.01 -11.22 16 18 C 0.16 3.07 10.92 85.05 0.93 4.00 16 19 C -0.10 -2.40 4.66 -21.26 -0.10 -2.50 16 20 C 0.27 8.22 11.19 88.33 0.99 9.21 16 21 N -0.45 -15.93 18.17 19.00 0.35 -15.58 16 22 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 23 H 0.06 2.32 7.62 -2.39 -0.02 2.30 16 24 H 0.06 2.87 5.61 -2.39 -0.01 2.86 16 25 H 0.00 -0.12 7.40 -2.39 -0.02 -0.14 16 26 H 0.07 2.61 4.41 -2.39 -0.01 2.60 16 27 H 0.01 0.62 7.83 -2.39 -0.02 0.60 16 28 H -0.04 -2.50 7.86 -2.39 -0.02 -2.52 16 29 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 30 H 0.10 3.16 7.90 -2.38 -0.02 3.14 16 31 H 0.02 0.75 7.29 -2.39 -0.02 0.73 16 32 H 0.17 2.53 8.06 -2.91 -0.02 2.51 16 33 H 0.20 1.48 8.06 -2.91 -0.02 1.45 16 34 H 0.19 2.55 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -67.30 286.72 2.97 -64.33 By element: Atomic # 1 Polarization: 0.88 SS G_CDS: 1.11 Total: 1.99 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: 5.33 Total: -3.45 kcal Atomic # 7 Polarization: -102.96 SS G_CDS: -5.50 Total: -108.46 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -67.30 2.97 -64.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592071634.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.621 kcal (2) G-P(sol) polarization free energy of solvation -67.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds