Wall clock time and date at job start Mon Mar 30 2020 04:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99691 * 2 1 4 4 H 1.48500 * 109.47678 * 270.00519 * 3 2 1 5 5 H 1.48495 * 109.47195 * 30.00641 * 3 2 1 6 6 H 1.48504 * 109.47136 * 150.00121 * 3 2 1 7 7 C 1.37882 * 120.00506 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00186 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99690 * 359.97438 * 7 2 1 10 10 O 1.42895 * 109.47348 * 180.02562 * 9 7 2 11 11 C 1.42899 * 114.00680 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47515 * 180.02562 * 11 10 9 13 13 N 1.46896 * 109.47580 * 64.99716 * 12 11 10 14 14 C 1.47904 * 110.99924 * 52.60239 * 13 12 11 15 15 C 1.53999 * 107.05611 * 145.84319 * 14 13 12 16 16 H 1.08989 * 110.30967 * 239.86042 * 15 14 13 17 17 O 1.42900 * 110.38678 * 117.73557 * 15 14 13 18 18 C 1.54591 * 105.13861 * 358.77969 * 15 14 13 19 19 C 1.48533 * 111.00312 * 170.00089 * 13 12 11 20 20 H 1.09002 * 110.66747 * 318.71431 * 19 13 12 21 21 C 1.53003 * 110.81000 * 81.77876 * 19 13 12 22 22 O 1.42897 * 109.47173 * 62.59474 * 21 19 13 23 23 H 0.96992 * 120.00367 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47436 * 60.00118 * 9 7 2 25 25 H 1.09008 * 109.47168 * 300.00191 * 9 7 2 26 26 H 1.08997 * 109.47410 * 59.99432 * 11 10 9 27 27 H 1.09000 * 109.46826 * 300.00133 * 11 10 9 28 28 H 1.09003 * 109.46610 * 304.99506 * 12 11 10 29 29 H 1.09001 * 109.47071 * 184.99729 * 12 11 10 30 30 H 1.09000 * 109.91374 * 26.49580 * 14 13 12 31 31 H 1.08999 * 110.08666 * 265.29073 * 14 13 12 32 32 H 0.96703 * 114.00423 * 64.23835 * 17 15 14 33 33 H 1.08999 * 110.71886 * 219.67553 * 18 15 14 34 34 H 1.09005 * 110.72562 * 96.40006 * 18 15 14 35 35 H 1.08997 * 109.47157 * 182.60145 * 21 19 13 36 36 H 1.08999 * 109.46464 * 302.59790 * 21 19 13 37 37 H 0.96700 * 113.99768 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0467 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 8 2.1798 -3.5852 -0.0005 11 6 1.5654 -4.8754 -0.0011 12 6 2.6484 -5.9561 -0.0004 13 7 3.4076 -5.8878 1.2553 14 6 2.5026 -5.9248 2.4245 15 6 3.2382 -6.6887 3.5411 16 1 2.6695 -7.5711 3.8340 17 8 3.4495 -5.8385 4.6701 18 6 4.5923 -7.1042 2.9216 19 6 4.3042 -7.0631 1.3998 20 1 3.7990 -7.9742 1.0792 21 6 5.5990 -6.8594 0.6105 22 8 6.3068 -5.7358 1.1382 23 1 -0.4850 0.8399 0.0004 24 1 0.6242 -2.5567 -0.8903 25 1 0.6248 -2.5570 0.8897 26 1 0.9455 -4.9822 -0.8912 27 1 0.9449 -4.9827 0.8886 28 1 3.3224 -5.7954 -0.8418 29 1 2.1824 -6.9374 -0.0904 30 1 1.5807 -6.4449 2.1641 31 1 2.2762 -4.9111 2.7550 32 1 2.6343 -5.5458 5.1001 33 1 4.8670 -8.1113 3.2352 34 1 5.3726 -6.3905 3.1859 35 1 6.2195 -7.7516 0.6938 36 1 5.3608 -6.6791 -0.4378 37 1 7.1396 -5.5472 0.6844 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698193292.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:35 Heat of formation + Delta-G solvation = -137.270129 kcal Electronic energy + Delta-G solvation = -18517.470121 eV Core-core repulsion = 15488.121670 eV Total energy + Delta-G solvation = -3029.348451 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 245.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.58656 -36.75946 -36.58632 -35.33167 -32.75754 -31.69152 -29.54245 -27.98415 -26.44862 -25.03815 -22.40337 -22.14669 -20.38303 -20.05133 -17.47932 -17.11072 -16.32783 -16.20936 -15.77987 -15.01447 -14.74122 -14.32479 -14.20654 -13.74023 -13.41062 -13.11714 -12.95108 -12.81085 -12.28208 -11.85986 -11.56054 -11.51010 -11.20357 -10.89914 -10.76416 -10.63801 -10.52557 -10.36178 -9.95726 -9.92481 -9.81242 -9.02363 -8.73799 -8.10195 -8.07266 -6.04362 -4.04842 3.35756 3.40306 3.47600 3.96156 4.20749 4.31030 4.41617 4.68213 4.78289 4.94827 5.04707 5.16977 5.31961 5.32235 5.35682 5.43476 5.50332 5.62094 5.68204 5.76361 5.86468 5.97645 6.09167 6.20095 6.34434 6.35256 7.07377 7.14644 7.27500 7.48969 7.72276 7.83204 7.88443 8.23628 8.68080 9.10290 9.59862 11.07433 Molecular weight = 245.15amu Principal moments of inertia in cm(-1) A = 0.024487 B = 0.005328 C = 0.005253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.168066 B = 5254.229526 C = 5329.178012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.055 3.945 3 Si 0.907 3.093 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.509 4.509 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.377 6.377 11 C 0.063 3.937 12 C 0.050 3.950 13 N -0.478 5.478 14 C 0.007 3.993 15 C 0.094 3.906 16 H 0.057 0.943 17 O -0.558 6.558 18 C -0.107 4.107 19 C 0.059 3.941 20 H 0.061 0.939 21 C 0.095 3.905 22 O -0.549 6.549 23 H 0.263 0.737 24 H 0.002 0.998 25 H 0.002 0.998 26 H 0.039 0.961 27 H 0.035 0.965 28 H 0.082 0.918 29 H 0.037 0.963 30 H 0.043 0.957 31 H 0.094 0.906 32 H 0.377 0.623 33 H 0.070 0.930 34 H 0.101 0.899 35 H 0.043 0.957 36 H 0.046 0.954 37 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.677 -17.490 3.441 19.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.146 4.146 3 Si 0.734 3.266 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.195 1.195 7 C -0.547 4.547 8 H 0.086 0.914 9 C 0.120 3.880 10 O -0.297 6.297 11 C -0.015 4.015 12 C -0.078 4.078 13 N -0.203 5.203 14 C -0.121 4.121 15 C 0.035 3.965 16 H 0.074 0.926 17 O -0.363 6.363 18 C -0.145 4.145 19 C -0.049 4.049 20 H 0.079 0.921 21 C 0.017 3.983 22 O -0.353 6.353 23 H 0.072 0.928 24 H 0.019 0.981 25 H 0.020 0.980 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.101 0.899 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.112 0.888 32 H 0.224 0.776 33 H 0.088 0.912 34 H 0.119 0.881 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 7.114 -16.926 3.666 18.723 hybrid contribution -0.816 0.115 -0.425 0.927 sum 6.298 -16.811 3.242 18.242 Atomic orbital electron populations 1.69964 1.06111 1.27024 1.51065 1.24945 0.94954 0.99406 0.95272 0.86344 0.79786 0.82270 0.78169 1.20532 1.21150 1.19525 1.21078 0.94170 0.89302 1.50137 0.91440 1.20175 0.88844 0.83994 0.95000 1.87989 1.34497 1.12192 1.94978 1.22298 0.93765 0.86513 0.98900 1.22378 0.96072 0.96003 0.93370 1.64701 1.16979 1.37763 1.00903 1.23660 0.94452 1.02151 0.91818 1.22660 0.96578 0.91313 0.85965 0.92561 1.86568 1.35864 1.68961 1.44898 1.22431 0.97705 1.01639 0.92734 1.22897 0.93816 0.92489 0.95744 0.92146 1.21892 0.91903 0.88287 0.96243 1.86659 1.38258 1.49730 1.60665 0.92781 0.98060 0.98034 0.94310 0.94648 0.89921 0.94462 0.93838 0.88785 0.77557 0.91179 0.88069 0.93875 0.93586 0.78251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.65 13.29 55.43 0.74 -26.91 16 2 C 0.05 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 22.56 29.54 -169.99 -5.02 17.54 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16 7 C -0.51 -15.58 9.43 -34.44 -0.32 -15.90 16 8 H 0.07 2.08 7.81 -52.49 -0.41 1.67 16 9 C 0.19 5.54 5.69 36.00 0.20 5.74 16 10 O -0.38 -9.59 10.27 -35.23 -0.36 -9.96 16 11 C 0.06 1.22 5.81 37.15 0.22 1.44 16 12 C 0.05 0.79 5.22 -3.83 -0.02 0.77 16 13 N -0.48 -7.82 4.99 -222.63 -1.11 -8.93 16 14 C 0.01 0.11 5.06 -2.75 -0.01 0.10 16 15 C 0.09 1.22 4.35 -25.37 -0.11 1.11 16 16 H 0.06 0.59 8.14 -51.94 -0.42 0.16 16 17 O -0.56 -7.77 13.26 -35.23 -0.47 -8.24 16 18 C -0.11 -1.37 6.18 -24.88 -0.15 -1.53 16 19 C 0.06 0.75 2.72 -65.79 -0.18 0.58 16 20 H 0.06 0.64 7.85 -51.93 -0.41 0.24 16 21 C 0.10 1.11 6.94 37.16 0.26 1.37 16 22 O -0.55 -7.63 12.44 -35.23 -0.44 -8.07 16 23 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 24 H 0.00 0.05 8.14 -51.93 -0.42 -0.38 16 25 H 0.00 0.05 8.14 -51.92 -0.42 -0.37 16 26 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.04 0.66 6.45 -51.93 -0.33 0.33 16 28 H 0.08 1.33 7.64 -51.93 -0.40 0.93 16 29 H 0.04 0.48 7.89 -51.93 -0.41 0.07 16 30 H 0.04 0.58 7.18 -51.93 -0.37 0.21 16 31 H 0.09 1.68 7.95 -51.93 -0.41 1.27 16 32 H 0.38 3.69 9.12 45.56 0.42 4.10 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.10 1.57 7.03 -51.93 -0.37 1.21 16 35 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.05 0.53 7.57 -51.93 -0.39 0.14 16 37 H 0.37 3.41 9.12 45.56 0.42 3.82 16 LS Contribution 304.72 15.07 4.59 4.59 Total: -1.00 -36.18 304.72 -6.63 -42.82 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -4.34 Total: 1.95 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: -0.22 Total: -4.80 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: -0.37 Total: -35.84 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: -1.27 Total: -26.26 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -36.18 -6.63 -42.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698193292.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.453 kcal (2) G-P(sol) polarization free energy of solvation -36.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds