Wall clock time and date at job start Mon Mar 30 2020 04:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00267 * 2 1 4 4 H 1.48498 * 109.47274 * 270.00191 * 3 2 1 5 5 H 1.48501 * 109.47000 * 30.00429 * 3 2 1 6 6 H 1.48495 * 109.47415 * 150.00177 * 3 2 1 7 7 C 1.37878 * 119.99912 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99996 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00229 * 179.97438 * 7 2 1 10 10 O 1.42901 * 109.47472 * 180.02562 * 9 7 2 11 11 C 1.42901 * 114.00150 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47033 * 179.97438 * 11 10 9 13 13 O 1.42902 * 109.46612 * 65.00251 * 12 11 10 14 14 C 1.42904 * 113.99625 * 179.97438 * 13 12 11 15 15 H 1.08999 * 109.54529 * 29.82014 * 14 13 12 16 16 C 1.53180 * 109.61299 * 269.59660 * 14 13 12 17 17 C 1.53098 * 109.16075 * 183.10857 * 16 14 13 18 18 O 1.42905 * 109.41155 * 57.61062 * 17 16 14 19 19 C 1.42905 * 114.09831 * 298.83847 * 18 17 16 20 20 C 1.53092 * 109.41215 * 61.16158 * 19 18 17 21 21 H 1.09000 * 109.52044 * 62.36086 * 20 19 18 22 22 N 1.46896 * 109.51761 * 182.48192 * 20 19 18 23 23 H 0.96995 * 119.99663 * 359.97438 * 1 2 3 24 24 H 1.09008 * 109.46812 * 60.00145 * 9 7 2 25 25 H 1.08997 * 109.47287 * 300.00444 * 9 7 2 26 26 H 1.09003 * 109.46761 * 59.99793 * 11 10 9 27 27 H 1.08991 * 109.46882 * 299.99868 * 11 10 9 28 28 H 1.08993 * 109.47245 * 305.00037 * 12 11 10 29 29 H 1.09003 * 109.46994 * 184.99901 * 12 11 10 30 30 H 1.08996 * 109.52502 * 303.01468 * 16 14 13 31 31 H 1.08995 * 109.52068 * 63.14717 * 16 14 13 32 32 H 1.09000 * 109.48092 * 297.63128 * 17 16 14 33 33 H 1.08993 * 109.47885 * 177.58982 * 17 16 14 34 34 H 1.08997 * 109.47832 * 181.14188 * 19 18 17 35 35 H 1.09000 * 109.48236 * 301.17758 * 19 18 17 36 36 H 1.00896 * 111.00567 * 299.99485 * 22 20 19 37 37 H 1.00906 * 111.00083 * 63.96052 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 8 3.9879 -2.5414 -0.0022 11 6 5.4124 -2.6543 -0.0022 12 6 5.8069 -4.1326 -0.0028 13 8 5.3796 -4.7390 -1.2242 14 6 5.7013 -6.1276 -1.3272 15 1 5.7172 -6.5730 -0.3325 16 6 7.0759 -6.2896 -1.9833 17 6 7.3762 -7.7804 -2.1593 18 8 6.3447 -8.3833 -2.9434 19 6 5.0441 -8.3043 -2.3566 20 6 4.6502 -6.8345 -2.1885 21 1 4.5987 -6.3570 -3.1670 22 7 3.3392 -6.7498 -1.5313 23 1 -0.4849 0.8400 0.0004 24 1 3.8752 -0.6805 0.8889 25 1 3.8746 -0.6801 -0.8911 26 1 5.8151 -2.1714 0.8882 27 1 5.8152 -2.1701 -0.8918 28 1 5.3311 -4.6359 0.8388 29 1 6.8897 -4.2197 0.0867 30 1 7.0745 -5.8008 -2.9575 31 1 7.8378 -5.8361 -1.3493 32 1 7.4175 -8.2608 -1.1817 33 1 8.3344 -7.9010 -2.6646 34 1 4.3224 -8.8023 -3.0041 35 1 5.0549 -8.7915 -1.3816 36 1 2.6297 -7.2138 -2.0784 37 1 3.3785 -7.1263 -0.5960 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724849602.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:18 Heat of formation + Delta-G solvation = -167.392587 kcal Electronic energy + Delta-G solvation = -18188.519120 eV Core-core repulsion = 15157.864461 eV Total energy + Delta-G solvation = -3030.654659 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 245.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.82581 -39.01874 -37.94043 -35.59790 -34.85303 -33.02665 -31.24858 -29.51102 -29.02165 -25.45533 -24.08994 -23.89489 -23.26675 -21.45905 -19.06759 -18.30820 -17.59171 -17.16228 -17.07433 -16.92372 -16.56708 -16.11708 -16.07594 -15.41954 -15.27363 -14.75567 -14.42056 -14.17436 -13.79120 -13.74816 -13.35537 -13.04828 -12.71986 -12.57621 -12.37466 -12.21122 -11.84455 -11.74108 -11.50277 -11.34201 -10.95434 -10.91964 -10.40180 -10.34139 -9.49307 -8.36145 -6.44029 1.33196 1.37153 1.47864 2.30474 2.61190 2.85421 2.96063 3.09545 3.51706 3.65735 3.82709 3.96153 4.05438 4.14573 4.21443 4.22686 4.30296 4.46808 4.49701 4.58683 4.62570 4.66592 4.72605 4.81795 4.84671 5.00528 5.01012 5.17955 5.44455 5.95299 6.04324 6.24675 6.41149 6.56428 6.60142 6.78386 7.20307 8.81465 Molecular weight = 245.15amu Principal moments of inertia in cm(-1) A = 0.039902 B = 0.004421 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.546365 B = 6332.551954 C = 6821.272000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.012 3.988 3 Si 0.958 3.042 4 H -0.261 1.261 5 H -0.271 1.271 6 H -0.243 1.243 7 C -0.546 4.546 8 H 0.026 0.974 9 C 0.179 3.821 10 O -0.401 6.401 11 C 0.048 3.952 12 C 0.071 3.929 13 O -0.385 6.385 14 C 0.089 3.911 15 H 0.069 0.931 16 C -0.173 4.173 17 C 0.062 3.938 18 O -0.398 6.398 19 C 0.040 3.960 20 C 0.063 3.937 21 H 0.070 0.930 22 N -0.845 5.845 23 H 0.273 0.727 24 H 0.016 0.984 25 H 0.006 0.994 26 H 0.077 0.923 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.094 0.906 30 H 0.066 0.934 31 H 0.095 0.905 32 H 0.068 0.932 33 H 0.116 0.884 34 H 0.106 0.894 35 H 0.066 0.934 36 H 0.351 0.649 37 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.352 -15.157 -1.625 23.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.186 4.186 3 Si 0.779 3.221 4 H -0.186 1.186 5 H -0.196 1.196 6 H -0.167 1.167 7 C -0.583 4.583 8 H 0.045 0.955 9 C 0.103 3.897 10 O -0.321 6.321 11 C -0.029 4.029 12 C -0.005 4.005 13 O -0.305 6.305 14 C 0.031 3.969 15 H 0.087 0.913 16 C -0.212 4.212 17 C -0.015 4.015 18 O -0.316 6.316 19 C -0.039 4.039 20 C -0.049 4.049 21 H 0.088 0.912 22 N -0.377 5.377 23 H 0.082 0.918 24 H 0.034 0.966 25 H 0.024 0.976 26 H 0.095 0.905 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.112 0.888 30 H 0.085 0.915 31 H 0.113 0.887 32 H 0.086 0.914 33 H 0.134 0.866 34 H 0.124 0.876 35 H 0.084 0.916 36 H 0.165 0.835 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 18.088 -14.416 -2.034 23.220 hybrid contribution -0.163 -0.083 0.366 0.410 sum 17.925 -14.499 -1.668 23.115 Atomic orbital electron populations 1.70043 1.08305 1.28778 1.51159 1.25873 0.95839 1.03458 0.93381 0.85572 0.79498 0.77285 0.79741 1.18594 1.19556 1.16672 1.21172 0.91050 0.93803 1.52315 0.95522 1.20318 0.93343 0.81119 0.94911 1.87969 1.20902 1.27979 1.95203 1.22736 0.82503 0.96632 1.01000 1.22613 0.99134 0.91784 0.86991 1.88104 1.81171 1.22894 1.38298 1.22269 0.93666 0.82475 0.98502 0.91308 1.22742 0.97099 0.98788 1.02536 1.22757 0.91498 0.90442 0.96765 1.87914 1.16693 1.78717 1.48243 1.23570 0.85360 0.95245 0.99769 1.22178 0.89449 0.95088 0.98209 0.91160 1.58588 1.05832 1.66348 1.06940 0.91785 0.96611 0.97616 0.90499 0.93294 0.93056 0.88841 0.91477 0.88663 0.91418 0.86587 0.87591 0.91617 0.83456 0.84117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.08 13.96 21.45 0.30 -60.78 16 2 C 0.01 0.74 5.47 84.65 0.46 1.21 16 3 Si 0.96 44.55 27.47 68.60 1.88 46.43 16 4 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 5 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 6 H -0.24 -10.33 6.54 99.48 0.65 -9.68 16 7 C -0.55 -34.89 9.99 25.60 0.26 -34.63 16 8 H 0.03 1.93 8.06 -2.91 -0.02 1.90 16 9 C 0.18 9.47 4.76 71.24 0.34 9.81 16 10 O -0.40 -20.09 10.29 -144.34 -1.49 -21.58 16 11 C 0.05 1.70 6.32 71.98 0.45 2.16 16 12 C 0.07 2.05 6.14 71.98 0.44 2.49 16 13 O -0.39 -12.84 9.89 -144.34 -1.43 -14.27 16 14 C 0.09 2.15 2.26 30.71 0.07 2.21 16 15 H 0.07 1.45 7.79 -2.39 -0.02 1.43 16 16 C -0.17 -3.19 5.77 30.69 0.18 -3.01 16 17 C 0.06 0.92 6.84 72.01 0.49 1.41 16 18 O -0.40 -7.95 10.77 -148.98 -1.60 -9.55 16 19 C 0.04 0.71 6.41 72.01 0.46 1.17 16 20 C 0.06 1.53 3.13 45.01 0.14 1.67 16 21 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 22 N -0.84 -22.12 9.19 -168.31 -1.55 -23.66 16 23 H 0.27 16.14 8.31 -92.71 -0.77 15.37 16 24 H 0.02 0.80 7.20 -2.38 -0.02 0.78 16 25 H 0.01 0.31 7.57 -2.39 -0.02 0.29 16 26 H 0.08 2.30 8.14 -2.39 -0.02 2.29 16 27 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.05 1.49 8.09 -2.39 -0.02 1.47 16 29 H 0.09 1.87 7.99 -2.39 -0.02 1.85 16 30 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.09 1.39 7.99 -2.39 -0.02 1.37 16 32 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.35 7.72 9.04 -89.70 -0.81 6.91 16 37 H 0.35 7.85 8.98 -89.69 -0.81 7.04 16 Total: -1.00 -79.11 305.55 -1.19 -80.30 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: -0.61 Total: 18.62 kcal Atomic # 6 Polarization: -18.81 SS G_CDS: 3.30 Total: -15.51 kcal Atomic # 7 Polarization: -83.19 SS G_CDS: -1.25 Total: -84.44 kcal Atomic # 8 Polarization: -40.88 SS G_CDS: -4.52 Total: -45.40 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.88 Total: 46.43 kcal Total: -79.11 -1.19 -80.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724849602.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.088 kcal (2) G-P(sol) polarization free energy of solvation -79.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds