Wall clock time and date at job start Mon Mar 30 2020 03:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31402 * 1 3 3 Si 1.86791 * 120.00348 * 2 1 4 4 H 1.48504 * 109.47416 * 269.72655 * 3 2 1 5 5 H 1.48498 * 109.47230 * 29.72726 * 3 2 1 6 6 H 1.48502 * 109.47355 * 149.72753 * 3 2 1 7 7 C 1.38915 * 119.99508 * 179.73198 * 2 1 3 8 8 H 1.07998 * 119.99357 * 194.61766 * 7 2 1 9 9 N 1.37156 * 120.00187 * 14.61218 * 7 2 1 10 10 C 1.38338 * 117.18185 * 34.57418 * 9 7 2 11 11 C 1.39773 * 117.29886 * 40.84118 * 10 9 7 12 12 C 1.37678 * 120.67917 * 180.34646 * 11 10 9 13 13 C 1.38572 * 120.14575 * 0.02562 * 12 11 10 14 14 C 1.36626 * 119.99490 * 359.43225 * 13 12 11 15 15 C 1.39203 * 123.62832 * 220.78008 * 10 9 7 16 16 C 1.46780 * 123.06933 * 359.89500 * 15 10 9 17 17 O 1.21592 * 117.77012 * 139.73422 * 16 15 10 18 18 N 1.33177 * 124.46988 * 319.76300 * 16 15 10 19 19 C 1.46286 * 121.50127 * 0.67137 * 18 16 15 20 20 C 1.32998 * 117.18190 * 214.82679 * 9 7 2 21 21 O 1.21267 * 119.03970 * 357.43303 * 20 9 7 22 22 H 0.96997 * 119.99691 * 0.27300 * 1 2 3 23 23 H 1.08001 * 119.66130 * 0.33109 * 11 10 9 24 24 H 1.07994 * 119.92760 * 179.97438 * 12 11 10 25 25 H 1.08000 * 119.96910 * 179.85109 * 13 12 11 26 26 H 1.07993 * 119.53471 * 180.02562 * 14 13 12 27 27 H 0.96998 * 119.25155 * 180.70321 * 18 16 15 28 28 H 1.09008 * 109.57438 * 303.19640 * 19 18 16 29 29 H 1.09000 * 109.57280 * 182.82575 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 2.5014 2.0430 -1.4001 5 1 1.4427 2.6542 0.6942 6 1 3.5428 1.4417 0.7058 7 6 2.0085 -1.2031 0.0056 8 1 3.0623 -1.2171 0.2417 9 7 1.3559 -2.3730 -0.2886 10 6 0.3445 -2.3129 -1.2305 11 6 0.5645 -1.5157 -2.3573 12 6 -0.3981 -1.4000 -3.3347 13 6 -1.6013 -2.0762 -3.2101 14 6 -1.8296 -2.8689 -2.1210 15 6 -0.8612 -2.9984 -1.1118 16 6 -1.1827 -3.8615 0.0311 17 8 -2.3147 -3.8186 0.4727 18 7 -0.3189 -4.6882 0.6177 19 6 1.0675 -4.7938 0.1629 20 6 1.7467 -3.4664 0.3602 21 8 2.6775 -3.3908 1.1337 22 1 -0.4849 0.8400 -0.0040 23 1 1.4991 -0.9847 -2.4621 24 1 -0.2155 -0.7804 -4.2002 25 1 -2.3553 -1.9815 -3.9774 26 1 -2.7697 -3.3928 -2.0316 27 1 -0.6159 -5.2330 1.3632 28 1 1.0858 -5.0598 -0.8941 29 1 1.5847 -5.5583 0.7426 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006229515.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:42 Heat of formation + Delta-G solvation = -22.212711 kcal Electronic energy + Delta-G solvation = -18170.884430 eV Core-core repulsion = 15252.575157 eV Total energy + Delta-G solvation = -2918.309273 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.57679 -38.44724 -37.67877 -34.96363 -34.48180 -32.02647 -30.31677 -29.08068 -27.49820 -24.95505 -23.72563 -21.87497 -19.96943 -19.69283 -17.92742 -17.09333 -16.35573 -16.08950 -15.36143 -14.96908 -14.59582 -14.15179 -13.77688 -13.50089 -13.30273 -12.78818 -12.55604 -12.38358 -11.75721 -11.65901 -11.27032 -11.14718 -10.78794 -10.62008 -10.40861 -9.64611 -9.57141 -9.30512 -8.92204 -8.34000 -8.16610 -7.32518 -6.47153 -4.28917 1.71917 2.11855 3.02454 3.14786 3.19440 3.31652 3.39695 3.91591 3.99692 4.44233 4.47965 4.95799 5.10084 5.25870 5.44753 5.58154 5.71893 5.75431 5.98898 6.22753 6.44902 6.68099 6.91557 7.06392 7.18662 7.21448 7.36447 7.57402 7.67395 8.01986 8.08617 8.68939 8.84951 9.06165 9.46377 10.48763 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.020285 B = 0.012739 C = 0.009462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.986021 B = 2197.363940 C = 2958.469956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.049 3.951 3 Si 0.925 3.075 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.354 4.354 8 H 0.105 0.895 9 N -0.386 5.386 10 C 0.262 3.738 11 C -0.119 4.119 12 C -0.087 4.087 13 C -0.169 4.169 14 C -0.050 4.050 15 C -0.170 4.170 16 C 0.574 3.426 17 O -0.556 6.556 18 N -0.712 5.712 19 C 0.096 3.904 20 C 0.451 3.549 21 O -0.550 6.550 22 H 0.277 0.723 23 H 0.127 0.873 24 H 0.115 0.885 25 H 0.115 0.885 26 H 0.118 0.882 27 H 0.403 0.597 28 H 0.084 0.916 29 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.450 -4.866 -6.699 8.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.161 4.161 3 Si 0.750 3.250 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.481 4.481 8 H 0.123 0.877 9 N -0.096 5.096 10 C 0.163 3.837 11 C -0.139 4.139 12 C -0.106 4.106 13 C -0.188 4.188 14 C -0.070 4.070 15 C -0.176 4.176 16 C 0.363 3.637 17 O -0.435 6.435 18 N -0.366 5.366 19 C -0.032 4.032 20 C 0.240 3.760 21 O -0.430 6.430 22 H 0.087 0.913 23 H 0.145 0.855 24 H 0.133 0.867 25 H 0.133 0.867 26 H 0.136 0.864 27 H 0.240 0.760 28 H 0.102 0.898 29 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.606 -4.578 -6.156 7.696 hybrid contribution 0.161 0.849 0.424 0.963 sum -0.445 -3.729 -5.732 6.853 Atomic orbital electron populations 1.69884 1.05989 1.28627 1.42951 1.25487 0.95379 1.00295 0.94910 0.85940 0.79692 0.80580 0.78746 1.19767 1.20627 1.19038 1.19618 0.95466 0.82249 1.50721 0.87724 1.40663 1.29273 1.08755 1.30879 1.17273 0.86463 0.92892 0.87030 1.21079 1.00255 1.00247 0.92304 1.20912 0.93551 0.97967 0.98140 1.20442 0.98092 1.00995 0.99244 1.20637 0.96589 0.97288 0.92460 1.18942 0.94790 1.06335 0.97555 1.17831 0.84403 0.78734 0.82713 1.90750 1.21031 1.67986 1.63755 1.45462 1.10176 1.44079 1.36839 1.21665 0.82346 0.96984 1.02226 1.20339 0.86980 0.86450 0.82276 1.90588 1.30055 1.85857 1.36488 0.91255 0.85535 0.86745 0.86691 0.86362 0.76047 0.89769 0.86839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.46 11.41 55.49 0.63 -21.83 15 2 C 0.05 1.24 4.17 -17.48 -0.07 1.17 15 3 Si 0.93 19.81 29.58 -169.99 -5.03 14.78 15 4 H -0.27 -5.57 7.11 56.52 0.40 -5.17 15 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 15 6 H -0.27 -5.72 7.11 56.52 0.40 -5.32 15 7 C -0.35 -9.35 7.82 -14.92 -0.12 -9.46 15 8 H 0.11 2.85 7.42 -52.49 -0.39 2.46 15 9 N -0.39 -9.53 2.67 -59.62 -0.16 -9.69 15 10 C 0.26 5.98 4.00 -83.99 -0.34 5.64 15 11 C -0.12 -2.48 7.81 -39.21 -0.31 -2.78 15 12 C -0.09 -1.53 10.03 -39.66 -0.40 -1.93 15 13 C -0.17 -2.87 9.99 -40.04 -0.40 -3.27 15 14 C -0.05 -0.96 9.38 -39.33 -0.37 -1.33 15 15 C -0.17 -3.71 5.47 -105.25 -0.58 -4.29 15 16 C 0.57 12.52 7.22 -13.52 -0.10 12.42 15 17 O -0.56 -13.45 17.29 5.28 0.09 -13.36 15 18 N -0.71 -12.98 5.29 -63.48 -0.34 -13.32 15 19 C 0.10 1.65 6.48 -5.45 -0.04 1.61 15 20 C 0.45 10.48 7.09 -11.91 -0.08 10.39 15 21 O -0.55 -14.36 16.46 5.57 0.09 -14.27 15 22 H 0.28 7.06 8.31 -40.82 -0.34 6.72 15 23 H 0.13 2.67 7.14 -52.49 -0.37 2.29 15 24 H 0.11 1.66 8.06 -52.49 -0.42 1.24 15 25 H 0.12 1.58 8.06 -52.49 -0.42 1.16 15 26 H 0.12 2.10 7.87 -52.49 -0.41 1.68 15 27 H 0.40 6.32 8.85 -40.82 -0.36 5.95 15 28 H 0.08 1.26 8.14 -51.92 -0.42 0.84 15 29 H 0.11 1.58 8.11 -51.93 -0.42 1.16 15 LS Contribution 255.41 15.07 3.85 3.85 Total: -1.00 -32.29 255.41 -6.01 -38.30 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -2.36 Total: 7.36 kcal Atomic # 6 Polarization: 10.96 SS G_CDS: -2.79 Total: 8.17 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: 0.14 Total: -44.84 kcal Atomic # 8 Polarization: -27.81 SS G_CDS: 0.18 Total: -27.63 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.03 Total: 14.78 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -32.29 -6.01 -38.30 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006229515.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.090 kcal (2) G-P(sol) polarization free energy of solvation -32.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds