Wall clock time and date at job start Mon Mar 30 2020 03:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31402 * 1 3 3 Si 1.86791 * 120.00348 * 2 1 4 4 H 1.48504 * 109.47416 * 269.72655 * 3 2 1 5 5 H 1.48498 * 109.47230 * 29.72726 * 3 2 1 6 6 H 1.48502 * 109.47355 * 149.72753 * 3 2 1 7 7 C 1.38915 * 119.99508 * 179.73198 * 2 1 3 8 8 H 1.07998 * 119.99357 * 194.61766 * 7 2 1 9 9 N 1.37156 * 120.00187 * 14.61218 * 7 2 1 10 10 C 1.38338 * 117.18185 * 34.57418 * 9 7 2 11 11 C 1.39773 * 117.29886 * 40.84118 * 10 9 7 12 12 C 1.37678 * 120.67917 * 180.34646 * 11 10 9 13 13 C 1.38572 * 120.14575 * 0.02562 * 12 11 10 14 14 C 1.36626 * 119.99490 * 359.43225 * 13 12 11 15 15 C 1.39203 * 123.62832 * 220.78008 * 10 9 7 16 16 C 1.46780 * 123.06933 * 359.89500 * 15 10 9 17 17 O 1.21592 * 117.77012 * 139.73422 * 16 15 10 18 18 N 1.33177 * 124.46988 * 319.76300 * 16 15 10 19 19 C 1.46286 * 121.50127 * 0.67137 * 18 16 15 20 20 C 1.32998 * 117.18190 * 214.82679 * 9 7 2 21 21 O 1.21267 * 119.03970 * 357.43303 * 20 9 7 22 22 H 0.96997 * 119.99691 * 0.27300 * 1 2 3 23 23 H 1.08001 * 119.66130 * 0.33109 * 11 10 9 24 24 H 1.07994 * 119.92760 * 179.97438 * 12 11 10 25 25 H 1.08000 * 119.96910 * 179.85109 * 13 12 11 26 26 H 1.07993 * 119.53471 * 180.02562 * 14 13 12 27 27 H 0.96998 * 119.25155 * 180.70321 * 18 16 15 28 28 H 1.09008 * 109.57438 * 303.19640 * 19 18 16 29 29 H 1.09000 * 109.57280 * 182.82575 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 2.5014 2.0430 -1.4001 5 1 1.4427 2.6542 0.6942 6 1 3.5428 1.4417 0.7058 7 6 2.0085 -1.2031 0.0056 8 1 3.0623 -1.2171 0.2417 9 7 1.3559 -2.3730 -0.2886 10 6 0.3445 -2.3129 -1.2305 11 6 0.5645 -1.5157 -2.3573 12 6 -0.3981 -1.4000 -3.3347 13 6 -1.6013 -2.0762 -3.2101 14 6 -1.8296 -2.8689 -2.1210 15 6 -0.8612 -2.9984 -1.1118 16 6 -1.1827 -3.8615 0.0311 17 8 -2.3147 -3.8186 0.4727 18 7 -0.3189 -4.6882 0.6177 19 6 1.0675 -4.7938 0.1629 20 6 1.7467 -3.4664 0.3602 21 8 2.6775 -3.3908 1.1337 22 1 -0.4849 0.8400 -0.0040 23 1 1.4991 -0.9847 -2.4621 24 1 -0.2155 -0.7804 -4.2002 25 1 -2.3553 -1.9815 -3.9774 26 1 -2.7697 -3.3928 -2.0316 27 1 -0.6159 -5.2330 1.3632 28 1 1.0858 -5.0598 -0.8941 29 1 1.5847 -5.5583 0.7426 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006229515.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:42 Heat of formation + Delta-G solvation = -45.527911 kcal Electronic energy + Delta-G solvation = -18171.895453 eV Core-core repulsion = 15252.575157 eV Total energy + Delta-G solvation = -2919.320296 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.24095 -40.19216 -39.27103 -36.71891 -36.12008 -33.90816 -31.86575 -30.67102 -29.13172 -26.75835 -25.33054 -23.45259 -21.56133 -21.41441 -19.68216 -18.71879 -17.89209 -17.75999 -17.16566 -16.68873 -16.17339 -15.83418 -15.48879 -15.09435 -14.96262 -14.42691 -14.16047 -13.93458 -13.46825 -13.23590 -12.92430 -12.81421 -12.48716 -12.26411 -12.02388 -11.39265 -11.34878 -11.06205 -10.64622 -10.03531 -9.69360 -9.07122 -8.34447 -6.28189 0.15782 0.57667 1.31534 1.38730 1.50497 1.64812 1.77529 2.19482 2.40566 2.74514 2.82660 3.16313 3.55672 3.74532 4.07943 4.18680 4.31110 4.40805 4.62044 4.71245 4.91487 5.16742 5.36286 5.44808 5.51945 5.70301 5.78198 6.05205 6.08517 6.10789 6.29696 6.93043 7.09938 7.23640 7.64525 8.55924 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.020285 B = 0.012739 C = 0.009462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.986021 B = 2197.363940 C = 2958.469956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.019 3.981 3 Si 0.984 3.016 4 H -0.252 1.252 5 H -0.280 1.280 6 H -0.273 1.273 7 C -0.379 4.379 8 H 0.082 0.918 9 N -0.400 5.400 10 C 0.239 3.761 11 C -0.137 4.137 12 C -0.076 4.076 13 C -0.150 4.150 14 C -0.059 4.059 15 C -0.189 4.189 16 C 0.566 3.434 17 O -0.589 6.589 18 N -0.699 5.699 19 C 0.108 3.892 20 C 0.434 3.566 21 O -0.595 6.595 22 H 0.277 0.723 23 H 0.115 0.885 24 H 0.153 0.847 25 H 0.160 0.840 26 H 0.131 0.869 27 H 0.416 0.584 28 H 0.112 0.888 29 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.294 -4.796 -8.604 9.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.188 4.188 3 Si 0.807 3.193 4 H -0.176 1.176 5 H -0.205 1.205 6 H -0.197 1.197 7 C -0.505 4.505 8 H 0.100 0.900 9 N -0.110 5.110 10 C 0.142 3.858 11 C -0.157 4.157 12 C -0.094 4.094 13 C -0.168 4.168 14 C -0.078 4.078 15 C -0.195 4.195 16 C 0.356 3.644 17 O -0.471 6.471 18 N -0.352 5.352 19 C -0.019 4.019 20 C 0.224 3.776 21 O -0.478 6.478 22 H 0.087 0.913 23 H 0.133 0.867 24 H 0.171 0.829 25 H 0.177 0.823 26 H 0.149 0.851 27 H 0.254 0.746 28 H 0.130 0.870 29 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -1.455 -4.540 -8.090 9.390 hybrid contribution 0.389 0.802 0.948 1.301 sum -1.066 -3.738 -7.142 8.132 Atomic orbital electron populations 1.70002 1.07132 1.29171 1.43902 1.26165 0.95974 1.02711 0.93947 0.85069 0.77981 0.76661 0.79605 1.17638 1.20518 1.19727 1.19574 0.94900 0.83880 1.52127 0.89985 1.40860 1.29705 1.08685 1.31760 1.17470 0.86406 0.94430 0.87494 1.21168 1.00967 1.00514 0.93055 1.21355 0.92678 0.97299 0.98106 1.20942 0.98413 0.98479 0.98999 1.20943 0.96472 0.97867 0.92560 1.19182 0.95163 1.06757 0.98404 1.18068 0.84367 0.79053 0.82921 1.90722 1.22363 1.69236 1.64828 1.45358 1.10095 1.43127 1.36635 1.21767 0.81124 0.94272 1.04732 1.21382 0.86636 0.88137 0.81479 1.90546 1.32037 1.86838 1.38382 0.91335 0.86720 0.82942 0.82272 0.85098 0.74560 0.87038 0.83126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -46.62 11.41 21.66 0.25 -46.37 15 2 C 0.02 0.96 4.17 84.92 0.35 1.32 15 3 Si 0.98 40.84 29.58 68.60 2.03 42.87 15 4 H -0.25 -9.58 7.11 99.48 0.71 -8.87 15 5 H -0.28 -11.48 7.11 99.48 0.71 -10.77 15 6 H -0.27 -11.47 7.11 99.48 0.71 -10.77 15 7 C -0.38 -20.59 7.82 84.02 0.66 -19.94 15 8 H 0.08 4.70 7.42 -2.91 -0.02 4.68 15 9 N -0.40 -20.14 2.67 -461.91 -1.23 -21.38 15 10 C 0.24 10.86 4.00 38.72 0.15 11.02 15 11 C -0.14 -5.58 7.81 22.51 0.18 -5.40 15 12 C -0.08 -2.43 10.03 22.22 0.22 -2.20 15 13 C -0.15 -4.50 9.99 21.97 0.22 -4.28 15 14 C -0.06 -2.12 9.38 22.44 0.21 -1.91 15 15 C -0.19 -8.10 5.47 -20.27 -0.11 -8.21 15 16 C 0.57 24.41 7.22 86.72 0.63 25.03 15 17 O -0.59 -28.38 17.29 -4.01 -0.07 -28.45 15 18 N -0.70 -24.78 5.29 -473.91 -2.51 -27.29 15 19 C 0.11 3.57 6.48 85.58 0.55 4.13 15 20 C 0.43 20.44 7.09 87.84 0.62 21.07 15 21 O -0.59 -32.02 16.46 -2.99 -0.05 -32.07 15 22 H 0.28 14.11 8.31 -92.71 -0.77 13.34 15 23 H 0.11 4.85 7.14 -2.91 -0.02 4.83 15 24 H 0.15 3.69 8.06 -2.91 -0.02 3.67 15 25 H 0.16 3.41 8.06 -2.91 -0.02 3.39 15 26 H 0.13 4.32 7.87 -2.91 -0.02 4.30 15 27 H 0.42 12.51 8.85 -92.71 -0.82 11.69 15 28 H 0.11 3.12 8.14 -2.38 -0.02 3.10 15 29 H 0.15 3.83 8.11 -2.39 -0.02 3.81 15 Total: -1.00 -72.14 255.41 2.48 -69.66 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: 0.38 Total: 22.42 kcal Atomic # 6 Polarization: 16.92 SS G_CDS: 3.69 Total: 20.61 kcal Atomic # 7 Polarization: -91.54 SS G_CDS: -3.50 Total: -95.04 kcal Atomic # 8 Polarization: -60.40 SS G_CDS: -0.12 Total: -60.52 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 2.03 Total: 42.87 kcal Total: -72.14 2.48 -69.66 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006229515.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.135 kcal (2) G-P(sol) polarization free energy of solvation -72.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds