Wall clock time and date at job start Mon Mar 30 2020 03:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30588 * 1 3 3 Si 1.86803 * 119.99708 * 2 1 4 4 H 1.48494 * 109.47327 * 274.98489 * 3 2 1 5 5 H 1.48499 * 109.46935 * 34.98580 * 3 2 1 6 6 H 1.48500 * 109.47205 * 154.98185 * 3 2 1 7 7 C 1.40339 * 120.00198 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00049 * 186.03166 * 7 2 1 9 9 C 1.40188 * 120.00111 * 6.03260 * 7 2 1 10 10 N 1.32471 * 125.30461 * 354.05060 * 9 7 2 11 11 C 1.33971 * 109.77981 * 179.97438 * 10 9 7 12 12 C 1.40539 * 133.19438 * 180.02562 * 11 10 9 13 13 C 1.36355 * 119.85071 * 180.02562 * 12 11 10 14 14 C 1.39043 * 120.75639 * 0.02562 * 13 12 11 15 15 C 1.37962 * 120.57487 * 0.02562 * 14 13 12 16 16 C 1.38726 * 119.76434 * 359.70909 * 15 14 13 17 17 N 1.37846 * 125.30833 * 174.06226 * 9 7 2 18 18 C 1.46509 * 126.53463 * 359.95739 * 17 9 7 19 19 C 1.50698 * 109.46970 * 90.03051 * 18 17 9 20 20 O 1.20831 * 120.00213 * 359.97438 * 19 18 17 21 21 O 1.34230 * 119.99793 * 180.02562 * 19 18 17 22 22 H 0.97000 * 119.99978 * 359.97438 * 1 2 3 23 23 H 1.08004 * 120.07312 * 359.97438 * 12 11 10 24 24 H 1.07994 * 119.62102 * 180.02562 * 13 12 11 25 25 H 1.08001 * 119.70905 * 180.02562 * 14 13 12 26 26 H 1.08000 * 120.11739 * 179.97438 * 15 14 13 27 27 H 1.08997 * 109.46753 * 330.02901 * 18 17 9 28 28 H 1.08997 * 109.46695 * 210.02805 * 18 17 9 29 29 H 0.96698 * 116.99676 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3059 0.0000 0.0000 3 14 2.2398 1.6178 0.0000 4 1 2.3820 2.1073 -1.3947 5 1 1.4938 2.6199 0.8028 6 1 3.5861 1.4122 0.5921 7 6 2.0076 -1.2153 -0.0005 8 1 3.0831 -1.2180 0.0977 9 6 1.3126 -2.4260 -0.1287 10 7 -0.0059 -2.5540 -0.1435 11 6 -0.3344 -3.8456 -0.2803 12 6 -1.5637 -4.5229 -0.3536 13 6 -1.5840 -5.8788 -0.4962 14 6 -0.3999 -6.6039 -0.5701 15 6 0.8204 -5.9640 -0.4997 16 6 0.8676 -4.5846 -0.3601 17 7 1.8945 -3.6689 -0.2587 18 6 3.3298 -3.9611 -0.2886 19 6 3.8210 -4.2101 1.1142 20 8 3.0513 -4.1493 2.0436 21 8 5.1139 -4.4985 1.3312 22 1 -0.4850 0.8400 0.0004 23 1 -2.4901 -3.9708 -0.2961 24 1 -2.5306 -6.3955 -0.5525 25 1 -0.4357 -7.6773 -0.6835 26 1 1.7356 -6.5345 -0.5574 27 1 3.8644 -3.1126 -0.7155 28 1 3.5076 -4.8468 -0.8984 29 1 5.3819 -4.6500 2.2478 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000009941258.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:48 Heat of formation + Delta-G solvation = -20.937403 kcal Electronic energy + Delta-G solvation = -17392.690133 eV Core-core repulsion = 14474.436161 eV Total energy + Delta-G solvation = -2918.253972 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.65826 -39.56895 -36.21664 -35.75266 -33.70029 -32.83973 -29.71073 -28.75623 -27.12627 -25.88776 -22.02395 -21.38894 -20.69536 -19.46293 -17.87734 -17.10226 -16.44208 -16.33957 -15.81283 -15.35439 -14.87225 -14.06909 -13.67331 -13.11162 -12.99544 -12.74404 -12.62637 -12.19574 -11.59937 -11.44791 -11.26315 -11.06545 -10.74189 -10.66055 -10.39313 -10.31068 -10.27440 -9.43580 -9.06991 -7.97352 -7.30644 -6.95128 -6.73872 -4.69695 2.21740 2.50682 2.56908 2.96365 2.98992 3.03213 3.16808 3.73592 3.95661 4.13704 4.92742 5.18735 5.41832 5.45382 5.57889 5.63906 5.82695 5.98526 6.32573 6.49855 6.65992 6.70361 6.78207 6.92892 7.18250 7.38932 7.57737 7.61925 7.84144 7.88394 8.15705 8.25226 8.55534 8.90324 9.87946 10.15296 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.018302 B = 0.010192 C = 0.006907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.518308 B = 2746.481512 C = 4052.908023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.711 5.711 2 C 0.077 3.923 3 Si 0.920 3.080 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.261 1.261 7 C -0.438 4.438 8 H 0.085 0.915 9 C 0.428 3.572 10 N -0.533 5.533 11 C 0.118 3.882 12 C -0.130 4.130 13 C -0.120 4.120 14 C -0.182 4.182 15 C -0.101 4.101 16 C -0.003 4.003 17 N -0.528 5.528 18 C 0.144 3.856 19 C 0.451 3.549 20 O -0.489 6.489 21 O -0.524 6.524 22 H 0.281 0.719 23 H 0.110 0.890 24 H 0.105 0.895 25 H 0.105 0.895 26 H 0.094 0.906 27 H 0.126 0.874 28 H 0.112 0.888 29 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.919 -4.677 -1.157 8.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.333 5.333 2 C -0.151 4.151 3 Si 0.743 3.257 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.185 1.185 7 C -0.475 4.475 8 H 0.103 0.897 9 C 0.192 3.808 10 N -0.257 5.257 11 C -0.009 4.009 12 C -0.151 4.151 13 C -0.140 4.140 14 C -0.203 4.203 15 C -0.122 4.122 16 C -0.109 4.109 17 N -0.226 5.226 18 C 0.017 3.983 19 C 0.290 3.710 20 O -0.374 6.374 21 O -0.336 6.336 22 H 0.092 0.908 23 H 0.128 0.872 24 H 0.123 0.877 25 H 0.123 0.877 26 H 0.112 0.888 27 H 0.144 0.856 28 H 0.130 0.870 29 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 5.899 -3.794 -1.219 7.119 hybrid contribution 1.272 -0.142 0.709 1.463 sum 7.171 -3.936 -0.510 8.196 Atomic orbital electron populations 1.69972 1.07260 1.28809 1.27235 1.25863 0.94946 1.00851 0.93444 0.86117 0.80219 0.80137 0.79242 1.19160 1.19783 1.18493 1.18484 0.94387 0.87726 1.46930 0.89660 1.20462 0.87108 0.83162 0.90018 1.71402 1.08826 1.12900 1.32567 1.19522 0.91931 0.91553 0.97919 1.19788 0.95055 0.93332 1.06920 1.20237 0.96963 0.93638 1.03197 1.20286 0.91814 0.97972 1.10200 1.19578 0.97181 0.90243 1.05214 1.18790 0.89680 0.91533 1.10900 1.45166 1.02014 1.07651 1.67771 1.20612 0.82698 1.04943 0.90016 1.24484 0.79525 0.73088 0.93897 1.90777 1.56174 1.45444 1.45017 1.84528 1.29167 1.82853 1.37032 0.90791 0.87238 0.87671 0.87728 0.88757 0.85617 0.86991 0.73739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.88 11.88 55.57 0.66 -18.22 15 2 C 0.08 1.90 5.49 -17.29 -0.09 1.81 15 3 Si 0.92 17.80 29.57 -169.99 -5.03 12.78 15 4 H -0.27 -5.03 7.11 56.52 0.40 -4.63 15 5 H -0.27 -5.22 7.11 56.52 0.40 -4.82 15 6 H -0.26 -4.91 7.11 56.52 0.40 -4.51 15 7 C -0.44 -11.20 8.96 -38.06 -0.34 -11.54 15 8 H 0.09 1.96 7.19 -52.49 -0.38 1.58 15 9 C 0.43 11.59 7.41 -155.68 -1.15 10.44 15 10 N -0.53 -15.52 9.35 -10.31 -0.10 -15.62 15 11 C 0.12 3.13 7.21 -84.89 -0.61 2.52 15 12 C -0.13 -3.01 10.07 -39.39 -0.40 -3.41 15 13 C -0.12 -2.39 9.96 -39.96 -0.40 -2.79 15 14 C -0.18 -3.53 10.04 -39.38 -0.40 -3.92 15 15 C -0.10 -2.10 10.04 -39.50 -0.40 -2.50 15 16 C 0.00 -0.07 6.88 -83.75 -0.58 -0.65 15 17 N -0.53 -12.42 2.34 -114.76 -0.27 -12.69 15 18 C 0.14 2.54 6.48 -5.19 -0.03 2.51 15 19 C 0.45 8.03 8.40 36.00 0.30 8.33 15 20 O -0.49 -11.09 17.19 -18.75 -0.32 -11.41 15 21 O -0.52 -6.83 13.42 -39.26 -0.53 -7.35 15 22 H 0.28 6.68 8.29 -40.82 -0.34 6.34 15 23 H 0.11 2.41 8.06 -52.48 -0.42 1.99 15 24 H 0.11 1.74 8.06 -52.49 -0.42 1.31 15 25 H 0.10 1.68 8.06 -52.49 -0.42 1.26 15 26 H 0.09 1.70 8.06 -52.49 -0.42 1.27 15 27 H 0.13 1.95 7.39 -51.93 -0.38 1.57 15 28 H 0.11 1.60 8.14 -51.93 -0.42 1.18 15 29 H 0.40 3.59 9.10 45.56 0.41 4.01 15 LS Contribution 268.35 15.07 4.04 4.04 Total: -1.00 -33.90 268.35 -7.23 -41.13 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -1.59 Total: 6.55 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: -4.09 Total: 0.79 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: 0.29 Total: -46.53 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -0.85 Total: -18.76 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.03 Total: 12.78 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -33.90 -7.23 -41.13 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000009941258.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.189 kcal (2) G-P(sol) polarization free energy of solvation -33.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds