Wall clock time and date at job start Mon Mar 30 2020 03:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30588 * 1 3 3 Si 1.86803 * 119.99708 * 2 1 4 4 H 1.48494 * 109.47327 * 274.98489 * 3 2 1 5 5 H 1.48499 * 109.46935 * 34.98580 * 3 2 1 6 6 H 1.48500 * 109.47205 * 154.98185 * 3 2 1 7 7 C 1.40339 * 120.00198 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00049 * 186.03166 * 7 2 1 9 9 C 1.40188 * 120.00111 * 6.03260 * 7 2 1 10 10 N 1.32471 * 125.30461 * 354.05060 * 9 7 2 11 11 C 1.33971 * 109.77981 * 179.97438 * 10 9 7 12 12 C 1.40539 * 133.19438 * 180.02562 * 11 10 9 13 13 C 1.36355 * 119.85071 * 180.02562 * 12 11 10 14 14 C 1.39043 * 120.75639 * 0.02562 * 13 12 11 15 15 C 1.37962 * 120.57487 * 0.02562 * 14 13 12 16 16 C 1.38726 * 119.76434 * 359.70909 * 15 14 13 17 17 N 1.37846 * 125.30833 * 174.06226 * 9 7 2 18 18 C 1.46509 * 126.53463 * 359.95739 * 17 9 7 19 19 C 1.50698 * 109.46970 * 90.03051 * 18 17 9 20 20 O 1.20831 * 120.00213 * 359.97438 * 19 18 17 21 21 O 1.34230 * 119.99793 * 180.02562 * 19 18 17 22 22 H 0.97000 * 119.99978 * 359.97438 * 1 2 3 23 23 H 1.08004 * 120.07312 * 359.97438 * 12 11 10 24 24 H 1.07994 * 119.62102 * 180.02562 * 13 12 11 25 25 H 1.08001 * 119.70905 * 180.02562 * 14 13 12 26 26 H 1.08000 * 120.11739 * 179.97438 * 15 14 13 27 27 H 1.08997 * 109.46753 * 330.02901 * 18 17 9 28 28 H 1.08997 * 109.46695 * 210.02805 * 18 17 9 29 29 H 0.96698 * 116.99676 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3059 0.0000 0.0000 3 14 2.2398 1.6178 0.0000 4 1 2.3820 2.1073 -1.3947 5 1 1.4938 2.6199 0.8028 6 1 3.5861 1.4122 0.5921 7 6 2.0076 -1.2153 -0.0005 8 1 3.0831 -1.2180 0.0977 9 6 1.3126 -2.4260 -0.1287 10 7 -0.0059 -2.5540 -0.1435 11 6 -0.3344 -3.8456 -0.2803 12 6 -1.5637 -4.5229 -0.3536 13 6 -1.5840 -5.8788 -0.4962 14 6 -0.3999 -6.6039 -0.5701 15 6 0.8204 -5.9640 -0.4997 16 6 0.8676 -4.5846 -0.3601 17 7 1.8945 -3.6689 -0.2587 18 6 3.3298 -3.9611 -0.2886 19 6 3.8210 -4.2101 1.1142 20 8 3.0513 -4.1493 2.0436 21 8 5.1139 -4.4985 1.3312 22 1 -0.4850 0.8400 0.0004 23 1 -2.4901 -3.9708 -0.2961 24 1 -2.5306 -6.3955 -0.5525 25 1 -0.4357 -7.6773 -0.6835 26 1 1.7356 -6.5345 -0.5574 27 1 3.8644 -3.1126 -0.7155 28 1 3.5076 -4.8468 -0.8984 29 1 5.3819 -4.6500 2.2478 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000009941258.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:48 Heat of formation + Delta-G solvation = -44.061878 kcal Electronic energy + Delta-G solvation = -17393.692885 eV Core-core repulsion = 14474.436161 eV Total energy + Delta-G solvation = -2919.256724 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.34808 -41.01753 -37.84033 -37.11863 -35.47863 -34.55298 -31.35639 -30.54166 -28.72605 -27.67398 -23.48510 -23.13394 -22.39914 -21.13915 -19.22634 -18.88150 -18.00086 -17.90980 -17.34179 -16.79835 -16.55964 -15.68350 -15.35226 -14.73005 -14.61343 -14.45287 -14.07238 -13.60018 -13.27587 -13.05349 -12.71423 -12.57667 -12.37994 -12.32514 -11.99074 -11.92015 -11.84228 -11.13918 -10.85296 -9.85808 -9.06869 -8.71158 -8.53487 -6.59649 0.49047 0.91757 1.13010 1.40202 1.45296 1.57005 1.77649 2.15574 2.33992 2.45134 3.19029 3.60072 3.87620 3.89479 4.19604 4.28843 4.29739 4.46135 4.65480 4.87013 4.94123 5.12337 5.19058 5.49981 5.54456 5.62348 5.88497 5.89963 6.09277 6.18923 6.49945 6.73465 6.92151 7.12184 8.03148 8.39624 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.018302 B = 0.010192 C = 0.006907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.518308 B = 2746.481512 C = 4052.908023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.029 3.971 3 Si 1.003 2.997 4 H -0.257 1.257 5 H -0.272 1.272 6 H -0.248 1.248 7 C -0.467 4.467 8 H 0.103 0.897 9 C 0.400 3.600 10 N -0.586 5.586 11 C 0.057 3.943 12 C -0.151 4.151 13 C -0.114 4.114 14 C -0.164 4.164 15 C -0.106 4.106 16 C -0.018 4.018 17 N -0.530 5.530 18 C 0.133 3.867 19 C 0.465 3.535 20 O -0.547 6.547 21 O -0.500 6.500 22 H 0.285 0.715 23 H 0.104 0.896 24 H 0.145 0.855 25 H 0.152 0.848 26 H 0.129 0.871 27 H 0.145 0.855 28 H 0.151 0.849 29 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.891 -6.471 -1.683 11.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.194 4.194 3 Si 0.822 3.178 4 H -0.181 1.181 5 H -0.197 1.197 6 H -0.171 1.171 7 C -0.504 4.504 8 H 0.121 0.879 9 C 0.162 3.838 10 N -0.311 5.311 11 C -0.068 4.068 12 C -0.172 4.172 13 C -0.134 4.134 14 C -0.184 4.184 15 C -0.128 4.128 16 C -0.124 4.124 17 N -0.227 5.227 18 C 0.008 3.992 19 C 0.307 3.693 20 O -0.436 6.436 21 O -0.314 6.314 22 H 0.095 0.905 23 H 0.122 0.878 24 H 0.163 0.837 25 H 0.170 0.830 26 H 0.147 0.853 27 H 0.163 0.837 28 H 0.168 0.832 29 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 7.923 -5.658 -1.752 9.892 hybrid contribution 0.656 0.144 0.862 1.093 sum 8.579 -5.514 -0.890 10.237 Atomic orbital electron populations 1.70121 1.09482 1.30017 1.29356 1.27026 0.95657 1.04710 0.91987 0.84896 0.78854 0.74509 0.79590 1.18126 1.19655 1.17118 1.18952 0.95308 0.88078 1.48072 0.87938 1.20794 0.87304 0.84880 0.90841 1.71245 1.10796 1.14954 1.34133 1.20103 0.94301 0.91671 1.00735 1.20078 0.94103 0.95062 1.07940 1.20699 0.99360 0.92231 1.01145 1.20917 0.90760 1.00214 1.06523 1.20073 0.99453 0.88940 1.04285 1.19208 0.89168 0.92881 1.11181 1.45230 1.04077 1.06423 1.66938 1.21067 0.79887 1.07470 0.90793 1.24330 0.80196 0.71648 0.93146 1.90775 1.57955 1.48330 1.46572 1.84460 1.26261 1.81638 1.38992 0.90485 0.87817 0.83684 0.83022 0.85319 0.83730 0.83165 0.71165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -43.02 11.88 21.89 0.26 -42.76 15 2 C 0.03 1.48 5.49 85.39 0.47 1.95 15 3 Si 1.00 37.03 29.57 68.60 2.03 39.06 15 4 H -0.26 -8.98 7.11 99.48 0.71 -8.27 15 5 H -0.27 -9.83 7.11 99.48 0.71 -9.13 15 6 H -0.25 -8.50 7.11 99.48 0.71 -7.80 15 7 C -0.47 -24.62 8.96 23.26 0.21 -24.41 15 8 H 0.10 4.76 7.19 -2.91 -0.02 4.74 15 9 C 0.40 22.58 7.41 133.69 0.99 23.57 15 10 N -0.59 -36.15 9.35 -186.53 -1.74 -37.90 15 11 C 0.06 3.13 7.21 40.14 0.29 3.42 15 12 C -0.15 -7.15 10.07 22.39 0.23 -6.92 15 13 C -0.11 -4.30 9.96 22.02 0.22 -4.08 15 14 C -0.16 -5.71 10.04 22.40 0.22 -5.48 15 15 C -0.11 -4.15 10.04 22.32 0.22 -3.92 15 16 C -0.02 -0.87 6.88 39.06 0.27 -0.60 15 17 N -0.53 -25.13 2.34 -516.99 -1.21 -26.34 15 18 C 0.13 4.45 6.48 85.63 0.55 5.00 15 19 C 0.47 15.78 8.40 71.24 0.60 16.38 15 20 O -0.55 -24.77 17.19 21.95 0.38 -24.39 15 21 O -0.50 -11.46 13.42 -51.42 -0.69 -12.15 15 22 H 0.28 14.36 8.29 -92.71 -0.77 13.59 15 23 H 0.10 4.82 8.06 -2.91 -0.02 4.80 15 24 H 0.15 4.23 8.06 -2.91 -0.02 4.21 15 25 H 0.15 3.90 8.06 -2.91 -0.02 3.88 15 26 H 0.13 4.06 8.06 -2.91 -0.02 4.04 15 27 H 0.15 4.25 7.39 -2.39 -0.02 4.23 15 28 H 0.15 3.79 8.14 -2.39 -0.02 3.77 15 29 H 0.43 6.22 9.10 -74.06 -0.67 5.54 15 Total: -1.00 -79.81 268.35 3.82 -75.99 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: 0.53 Total: 23.59 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: 4.27 Total: 4.90 kcal Atomic # 7 Polarization: -104.31 SS G_CDS: -2.70 Total: -107.00 kcal Atomic # 8 Polarization: -36.23 SS G_CDS: -0.31 Total: -36.54 kcal Atomic # 14 Polarization: 37.03 SS G_CDS: 2.03 Total: 39.06 kcal Total: -79.81 3.82 -75.99 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000009941258.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.929 kcal (2) G-P(sol) polarization free energy of solvation -79.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds