Wall clock time and date at job start Mon Mar 30 2020 04:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35723 * 116.99545 * 2 1 4 4 C 1.39537 * 119.75071 * 0.02562 * 3 2 1 5 5 C 1.36362 * 120.91839 * 179.97438 * 4 3 2 6 6 C 1.40560 * 119.84827 * 359.97438 * 5 4 3 7 7 N 1.33746 * 121.35256 * 180.25024 * 6 5 4 8 8 C 1.32242 * 121.73724 * 180.23647 * 7 6 5 9 9 C 1.39927 * 118.59524 * 179.75939 * 8 7 6 10 10 H 1.07997 * 120.00148 * 187.30272 * 9 8 7 11 11 C 1.40405 * 119.99761 * 7.30474 * 9 8 7 12 12 N 1.30531 * 120.00149 * 7.82726 * 11 9 8 13 13 Si 1.86806 * 119.99947 * 187.55336 * 11 9 8 14 14 H 1.48503 * 109.47383 * 84.98823 * 13 11 9 15 15 H 1.48496 * 109.47133 * 204.99161 * 13 11 9 16 16 H 1.48504 * 109.47035 * 324.98990 * 13 11 9 17 17 N 1.37838 * 122.81196 * 359.48327 * 8 7 6 18 18 H 0.96995 * 119.88143 * 180.25712 * 17 8 7 19 19 C 1.35337 * 120.23010 * 0.27320 * 17 8 7 20 20 O 1.21687 * 121.22965 * 180.02562 * 19 17 8 21 21 C 1.41954 * 119.31447 * 0.02562 * 6 5 4 22 22 C 1.38814 * 119.97004 * 359.97438 * 21 6 5 23 23 H 1.09005 * 109.47483 * 59.99956 * 1 2 3 24 24 H 1.09005 * 109.46574 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47144 * 299.99549 * 1 2 3 26 26 H 1.08008 * 119.54224 * 359.94871 * 4 3 2 27 27 H 1.07995 * 120.07894 * 180.02562 * 5 4 3 28 28 H 0.97003 * 119.99979 * 179.73125 * 12 11 9 29 29 H 1.08001 * 120.28179 * 179.97438 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 1.2799 2.3762 0.0005 5 6 1.8740 3.6036 0.0011 6 6 3.2761 3.7022 0.0016 7 7 3.8902 4.8903 0.0072 8 6 5.2087 4.9919 0.0031 9 6 5.7821 6.2683 0.0042 10 1 6.8492 6.3811 -0.1180 11 6 4.9700 7.4025 0.1641 12 7 3.7071 7.2640 0.4636 13 14 5.6987 9.1099 -0.0444 14 1 5.6883 9.4804 -1.4824 15 1 4.8912 10.0901 0.7252 16 1 7.0961 9.1164 0.4583 17 7 6.0424 3.8943 0.0034 18 1 7.0044 4.0181 0.0041 19 6 5.5234 2.6444 0.0024 20 8 6.2424 1.6627 0.0031 21 6 4.0562 2.5162 0.0011 22 6 3.4326 1.2760 0.0005 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.2021 2.3063 0.0001 27 1 1.2686 4.4980 0.0019 28 1 3.1470 8.0477 0.5779 29 1 4.0212 0.3705 -0.0003 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000016769927.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:49 Heat of formation + Delta-G solvation = -53.321525 kcal Electronic energy + Delta-G solvation = -17093.264873 eV Core-core repulsion = 14173.606621 eV Total energy + Delta-G solvation = -2919.658252 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.80143 -40.27242 -38.51295 -37.44996 -35.32158 -33.51593 -32.11513 -30.71932 -28.63070 -27.27611 -25.10127 -23.96940 -22.54967 -20.30567 -19.60800 -19.35759 -18.04490 -17.54709 -16.70629 -16.55646 -16.41733 -16.18128 -15.74834 -14.90704 -14.60686 -14.51627 -13.93348 -13.64668 -13.43932 -13.25810 -13.06171 -12.75814 -12.57699 -12.00044 -11.93283 -11.88329 -11.11252 -11.08681 -10.40809 -10.01072 -9.89210 -8.60793 -8.51369 -6.80148 0.02912 0.31213 1.46573 1.48061 1.62435 1.70608 2.10772 2.14338 2.30132 2.69840 2.90177 3.69112 3.76509 3.91630 4.03733 4.32092 4.40577 4.51458 4.59597 4.76853 4.79575 5.01215 5.06887 5.26086 5.32143 5.49563 5.67707 5.71558 5.94242 6.06619 6.31429 6.54774 6.71301 7.18539 8.06066 8.24195 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.033144 B = 0.006702 C = 0.005603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.603416 B = 4176.689275 C = 4996.012036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.341 6.341 3 C 0.024 3.976 4 C -0.116 4.116 5 C -0.139 4.139 6 C 0.190 3.810 7 N -0.579 5.579 8 C 0.413 3.587 9 C -0.421 4.421 10 H 0.118 0.882 11 C 0.030 3.970 12 N -0.711 5.711 13 Si 1.003 2.997 14 H -0.262 1.262 15 H -0.267 1.267 16 H -0.249 1.249 17 N -0.665 5.665 18 H 0.410 0.590 19 C 0.548 3.452 20 O -0.592 6.592 21 C -0.289 4.289 22 C -0.066 4.066 23 H 0.061 0.939 24 H 0.118 0.882 25 H 0.061 0.939 26 H 0.161 0.839 27 H 0.133 0.867 28 H 0.293 0.707 29 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.275 0.445 -0.517 5.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.256 6.256 3 C -0.022 4.022 4 C -0.136 4.136 5 C -0.160 4.160 6 C 0.063 3.937 7 N -0.307 5.307 8 C 0.185 3.815 9 C -0.455 4.455 10 H 0.136 0.864 11 C -0.199 4.199 12 N -0.330 5.330 13 Si 0.822 3.178 14 H -0.187 1.187 15 H -0.191 1.191 16 H -0.172 1.172 17 N -0.309 5.309 18 H 0.248 0.752 19 C 0.343 3.657 20 O -0.475 6.475 21 C -0.298 4.298 22 C -0.086 4.086 23 H 0.080 0.920 24 H 0.137 0.863 25 H 0.079 0.921 26 H 0.178 0.822 27 H 0.151 0.849 28 H 0.104 0.896 29 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -5.667 0.400 -0.442 5.698 hybrid contribution 1.010 -0.098 -0.035 1.015 sum -4.657 0.303 -0.477 4.691 Atomic orbital electron populations 1.23273 0.76971 1.05215 1.01944 1.85919 1.23019 1.26261 1.90414 1.18594 0.91006 0.84958 1.07608 1.21155 1.00856 0.90768 1.00832 1.20476 0.91640 0.97857 1.05993 1.19495 0.95161 0.88189 0.90874 1.69459 1.05186 1.20718 1.35345 1.20111 0.85763 0.86639 0.89020 1.19911 0.97346 0.88209 1.40055 0.86436 1.27015 0.94705 1.05402 0.92778 1.70071 1.06793 1.34240 1.21922 0.84885 0.79592 0.73852 0.79498 1.18704 1.19149 1.17234 1.44813 1.11755 1.06285 1.68041 0.75222 1.18550 0.89168 0.82471 0.75468 1.90681 1.63618 1.38336 1.54884 1.20221 0.91959 0.95637 1.21944 1.19923 0.92191 0.95999 1.00501 0.92037 0.86333 0.92079 0.82192 0.84878 0.89579 0.86721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.80 113.37 1.11 1.55 15 2 O -0.34 -11.56 10.48 -90.45 -0.95 -12.50 15 3 C 0.02 0.93 6.71 22.75 0.15 1.08 15 4 C -0.12 -4.17 8.94 22.15 0.20 -3.97 15 5 C -0.14 -5.89 10.00 22.40 0.22 -5.67 15 6 C 0.19 9.48 6.63 40.34 0.27 9.75 15 7 N -0.58 -30.41 7.74 -186.52 -1.44 -31.86 15 8 C 0.41 20.58 7.38 133.70 0.99 21.56 15 9 C -0.42 -18.92 9.18 23.21 0.21 -18.71 15 10 H 0.12 4.56 7.86 -2.91 -0.02 4.54 15 11 C 0.03 1.26 5.46 85.41 0.47 1.73 15 12 N -0.71 -32.90 11.48 21.90 0.25 -32.65 15 13 Si 1.00 31.12 29.57 68.60 2.03 33.15 15 14 H -0.26 -8.07 7.11 99.48 0.71 -7.37 15 15 H -0.27 -8.01 7.11 99.48 0.71 -7.30 15 16 H -0.25 -7.29 7.11 99.48 0.71 -6.58 15 17 N -0.67 -31.16 5.34 -311.31 -1.66 -32.82 15 18 H 0.41 16.57 8.75 -92.71 -0.81 15.76 15 19 C 0.55 27.99 8.00 86.53 0.69 28.68 15 20 O -0.59 -31.67 17.45 -4.31 -0.08 -31.75 15 21 C -0.29 -14.49 5.90 -19.84 -0.12 -14.61 15 22 C -0.07 -3.02 9.61 22.57 0.22 -2.80 15 23 H 0.06 1.18 7.64 -2.38 -0.02 1.16 15 24 H 0.12 1.87 8.14 -2.38 -0.02 1.85 15 25 H 0.06 1.18 7.64 -2.39 -0.02 1.16 15 26 H 0.16 4.25 6.23 -2.91 -0.02 4.23 15 27 H 0.13 5.34 8.06 -2.91 -0.02 5.32 15 28 H 0.29 11.99 8.29 -92.71 -0.77 11.22 15 29 H 0.11 5.27 7.81 -2.91 -0.02 5.25 15 Total: -1.00 -63.53 261.39 2.96 -60.57 By element: Atomic # 1 Polarization: 28.85 SS G_CDS: 0.40 Total: 29.25 kcal Atomic # 6 Polarization: 14.20 SS G_CDS: 4.41 Total: 18.61 kcal Atomic # 7 Polarization: -94.47 SS G_CDS: -2.86 Total: -97.32 kcal Atomic # 8 Polarization: -43.23 SS G_CDS: -1.02 Total: -44.25 kcal Atomic # 14 Polarization: 31.12 SS G_CDS: 2.03 Total: 33.15 kcal Total: -63.53 2.96 -60.57 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016769927.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.250 kcal (2) G-P(sol) polarization free energy of solvation -63.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds