Wall clock time and date at job start Mon Mar 30 2020 03:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47169 * 175.83047 * 3 2 1 5 5 C 1.36876 * 119.99703 * 83.33047 * 4 3 2 6 6 H 1.07998 * 120.00015 * 168.99659 * 5 4 3 7 7 C 1.39044 * 120.00118 * 349.00214 * 5 4 3 8 8 N 1.31363 * 120.00338 * 3.34438 * 7 5 4 9 9 Si 1.86806 * 120.00089 * 183.34721 * 7 5 4 10 10 H 1.48499 * 109.47087 * 89.99626 * 9 7 5 11 11 H 1.48497 * 109.47057 * 209.99903 * 9 7 5 12 12 H 1.48502 * 109.47001 * 330.00041 * 9 7 5 13 13 C 1.34775 * 120.00324 * 263.33063 * 4 3 2 14 14 O 1.21585 * 120.00067 * 182.44143 * 13 4 3 15 15 C 1.47736 * 119.99836 * 2.44002 * 13 4 3 16 16 C 1.39674 * 120.12545 * 222.75326 * 15 13 4 17 17 C 1.37939 * 119.95916 * 180.02562 * 16 15 13 18 18 C 1.38311 * 120.21581 * 359.74687 * 17 16 15 19 19 C 1.38828 * 120.24456 * 0.50898 * 18 17 16 20 20 O 1.35913 * 119.97926 * 179.76259 * 19 18 17 21 21 C 1.38473 * 120.03876 * 359.49178 * 19 18 17 22 22 H 1.09003 * 109.46953 * 55.83018 * 3 2 1 23 23 H 1.09000 * 109.47370 * 295.83305 * 3 2 1 24 24 H 0.97002 * 120.00393 * 180.02562 * 8 7 5 25 25 H 1.08000 * 120.02227 * 0.02562 * 16 15 13 26 26 H 1.08002 * 119.89641 * 180.02562 * 17 16 15 27 27 H 1.07998 * 119.87743 * 180.26066 * 18 17 16 28 28 H 0.96699 * 114.00193 * 269.72815 * 20 19 18 29 29 H 1.08010 * 120.09997 * 180.22986 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0957 1.3784 -0.1004 5 6 3.1937 2.1533 1.0236 6 1 3.7145 3.0986 0.9841 7 6 2.6227 1.7235 2.2163 8 7 2.0466 0.5447 2.2815 9 14 2.6749 2.8222 3.7262 10 1 1.4691 3.6887 3.7497 11 1 2.7041 1.9811 4.9496 12 1 3.8930 3.6703 3.6793 13 6 3.4479 1.8829 -1.2995 14 8 3.8945 3.0112 -1.3770 15 6 3.2914 1.0651 -2.5198 16 6 4.2984 1.0502 -3.4877 17 6 4.1484 0.2858 -4.6261 18 6 3.0057 -0.4712 -4.8106 19 6 1.9971 -0.4589 -3.8567 20 8 0.8743 -1.2011 -4.0459 21 6 2.1368 0.3048 -2.7101 22 1 2.9716 -0.5764 -0.8503 23 1 2.9716 -0.4470 0.9250 24 1 1.6480 0.2450 3.1134 25 1 5.1938 1.6370 -3.3450 26 1 4.9278 0.2748 -5.3736 27 1 2.8959 -1.0711 -5.7020 28 1 0.1665 -0.7326 -4.5090 29 1 1.3543 0.3122 -1.9656 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019838745.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:17 Heat of formation + Delta-G solvation = -17.419029 kcal Electronic energy + Delta-G solvation = -17411.442868 eV Core-core repulsion = 14493.341464 eV Total energy + Delta-G solvation = -2918.101403 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.43404 -39.86383 -37.90500 -37.34897 -36.24619 -33.95362 -32.03778 -30.67804 -29.29353 -27.10718 -24.39197 -23.49199 -21.46221 -19.95668 -19.11454 -18.21023 -18.05657 -17.45885 -16.65269 -16.52850 -15.91760 -15.77292 -15.29225 -15.11409 -14.64000 -14.29905 -13.89647 -13.46114 -13.30754 -13.15034 -12.99388 -12.92814 -12.58242 -12.43492 -12.18694 -12.12226 -11.65473 -11.26861 -10.62260 -10.15951 -9.90150 -9.64068 -8.38402 -6.08119 -0.00927 0.28877 1.35224 1.41530 1.53154 1.78250 1.88982 2.17172 2.26535 2.65942 2.95000 2.98478 3.31474 3.55795 3.83029 3.97479 4.20490 4.28609 4.44836 4.50818 4.81771 4.92872 5.05973 5.33533 5.37909 5.40190 5.45092 5.82272 5.90703 6.30547 6.82321 6.88995 6.97899 7.20671 7.75457 8.52145 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.030934 B = 0.007979 C = 0.006638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.940609 B = 3508.349750 C = 4217.161538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C 0.268 3.732 3 C 0.215 3.785 4 N -0.444 5.444 5 C -0.331 4.331 6 H 0.092 0.908 7 C 0.001 3.999 8 N -0.898 5.898 9 Si 0.996 3.004 10 H -0.285 1.285 11 H -0.267 1.267 12 H -0.264 1.264 13 C 0.479 3.521 14 O -0.614 6.614 15 C -0.107 4.107 16 C -0.091 4.091 17 C -0.091 4.091 18 C -0.121 4.121 19 C 0.100 3.900 20 O -0.506 6.506 21 C -0.149 4.149 22 H 0.109 0.891 23 H 0.150 0.850 24 H 0.277 0.723 25 H 0.132 0.868 26 H 0.173 0.827 27 H 0.166 0.834 28 H 0.408 0.592 29 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.438 -5.503 -10.976 12.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.191 5.191 2 C -0.048 4.048 3 C 0.089 3.911 4 N -0.162 5.162 5 C -0.458 4.458 6 H 0.110 0.890 7 C -0.199 4.199 8 N -0.538 5.538 9 Si 0.820 3.180 10 H -0.211 1.211 11 H -0.192 1.192 12 H -0.188 1.188 13 C 0.270 3.730 14 O -0.501 6.501 15 C -0.110 4.110 16 C -0.111 4.111 17 C -0.108 4.108 18 C -0.139 4.139 19 C 0.056 3.944 20 O -0.319 6.319 21 C -0.169 4.169 22 H 0.126 0.874 23 H 0.167 0.833 24 H 0.088 0.912 25 H 0.150 0.850 26 H 0.191 0.809 27 H 0.183 0.817 28 H 0.267 0.733 29 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 2.207 -5.502 -10.508 12.064 hybrid contribution -0.289 1.034 1.061 1.510 sum 1.918 -4.468 -9.446 10.624 Atomic orbital electron populations 1.80907 1.14235 1.09410 1.14564 1.29448 0.95654 0.91541 0.88132 1.19519 0.80661 0.84678 1.06284 1.43729 1.54896 1.11389 1.06169 1.19871 1.34918 1.03754 0.87264 0.89000 1.26027 0.94527 0.97829 1.01558 1.69789 1.36847 1.18429 1.28757 0.84856 0.78567 0.77779 0.76793 1.21092 1.19158 1.18821 1.18689 0.83690 0.87029 0.83599 1.90589 1.51722 1.21226 1.86523 1.19816 0.96781 0.98606 0.95837 1.21387 0.97866 0.98643 0.93158 1.21372 0.98201 0.94561 0.96703 1.21853 0.93400 0.99454 0.99238 1.18400 0.89659 0.93040 0.93346 1.84783 1.25077 1.40891 1.81133 1.21872 0.98118 0.97248 0.99630 0.87396 0.83283 0.91205 0.84987 0.80940 0.81698 0.73331 0.87170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -24.97 18.48 20.01 0.37 -24.60 15 2 C 0.27 12.51 10.51 89.44 0.94 13.45 15 3 C 0.21 9.31 4.76 84.57 0.40 9.71 15 4 N -0.44 -22.00 2.60 -648.84 -1.69 -23.69 15 5 C -0.33 -17.67 9.48 84.10 0.80 -16.88 15 6 H 0.09 5.20 7.20 -2.91 -0.02 5.18 15 7 C 0.00 0.04 5.38 84.96 0.46 0.50 15 8 N -0.90 -44.34 8.07 21.68 0.17 -44.16 15 9 Si 1.00 41.17 29.55 68.60 2.03 43.20 15 10 H -0.28 -12.10 7.11 99.48 0.71 -11.39 15 11 H -0.27 -10.39 7.11 99.48 0.71 -9.68 15 12 H -0.26 -10.71 7.11 99.48 0.71 -10.00 15 13 C 0.48 23.24 7.24 86.75 0.63 23.86 15 14 O -0.61 -33.89 16.56 -3.98 -0.07 -33.96 15 15 C -0.11 -4.09 4.97 -20.10 -0.10 -4.19 15 16 C -0.09 -2.76 9.66 22.55 0.22 -2.54 15 17 C -0.09 -1.92 10.02 22.22 0.22 -1.70 15 18 C -0.12 -2.56 9.98 22.43 0.22 -2.34 15 19 C 0.10 2.79 6.70 22.47 0.15 2.94 15 20 O -0.51 -12.80 13.50 -92.57 -1.25 -14.05 15 21 C -0.15 -5.29 7.52 22.64 0.17 -5.12 15 22 H 0.11 4.02 5.66 -2.39 -0.01 4.00 15 23 H 0.15 6.64 5.99 -2.39 -0.01 6.62 15 24 H 0.28 13.18 8.31 -92.71 -0.77 12.41 15 25 H 0.13 3.92 8.06 -2.91 -0.02 3.89 15 26 H 0.17 2.20 8.06 -2.91 -0.02 2.17 15 27 H 0.17 2.31 8.06 -2.91 -0.02 2.29 15 28 H 0.41 6.52 9.06 -74.06 -0.67 5.85 15 29 H 0.11 4.48 4.20 -2.91 -0.01 4.46 15 Total: -1.00 -67.98 260.88 4.23 -63.75 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: 0.55 Total: 15.81 kcal Atomic # 6 Polarization: 13.59 SS G_CDS: 4.11 Total: 17.70 kcal Atomic # 7 Polarization: -91.32 SS G_CDS: -1.14 Total: -92.46 kcal Atomic # 8 Polarization: -46.69 SS G_CDS: -1.32 Total: -48.01 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.20 kcal Total: -67.98 4.23 -63.75 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019838745.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.335 kcal (2) G-P(sol) polarization free energy of solvation -67.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds