Wall clock time and date at job start Mon Mar 30 2020 03:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46507 * 109.47124 * 325.22384 * 3 2 1 5 5 C 1.36898 * 120.00000 * 264.62786 * 4 3 2 6 6 H 1.08000 * 120.00169 * 130.56585 * 5 4 3 7 7 C 1.39020 * 120.00121 * 310.56818 * 5 4 3 8 8 N 1.31384 * 120.00105 * 170.17159 * 7 5 4 9 9 Si 1.86800 * 119.99826 * 350.17302 * 7 5 4 10 10 H 1.48500 * 109.46923 * 95.24022 * 9 7 5 11 11 H 1.48507 * 109.47005 * 215.23583 * 9 7 5 12 12 H 1.48493 * 109.47359 * 335.24021 * 9 7 5 13 13 C 1.34774 * 119.99880 * 84.62976 * 4 3 2 14 14 O 1.21625 * 120.00366 * 2.05819 * 13 4 3 15 15 C 1.47492 * 120.00061 * 182.06131 * 13 4 3 16 16 C 1.39800 * 120.09396 * 137.64855 * 15 13 4 17 17 C 1.37691 * 119.90149 * 180.02562 * 16 15 13 18 18 C 1.39002 * 120.09794 * 0.02889 * 17 16 15 19 19 O 1.35717 * 119.90923 * 179.97438 * 18 17 16 20 20 C 1.39012 * 120.18697 * 0.22879 * 18 17 16 21 21 C 1.37687 * 120.09360 * 359.49124 * 20 18 17 22 22 H 1.08992 * 109.47084 * 205.22641 * 3 2 1 23 23 H 1.08998 * 109.47065 * 85.22346 * 3 2 1 24 24 H 0.97000 * 119.99798 * 179.97438 * 8 7 5 25 25 H 1.08002 * 120.04705 * 0.02562 * 16 15 13 26 26 H 1.08006 * 119.94803 * 180.02562 * 17 16 15 27 27 H 0.96702 * 113.99359 * 89.99944 * 19 18 17 28 28 H 1.08006 * 119.95409 * 179.71979 * 20 18 17 29 29 H 1.08004 * 120.04273 * 180.23142 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0969 -1.1337 0.7878 5 6 3.4296 -0.9600 2.1044 6 1 3.0430 -1.6358 2.8528 7 6 4.2651 0.0864 2.4779 8 7 4.4308 0.3729 3.7494 9 14 5.1521 1.0852 1.1721 10 1 4.3624 2.3033 0.8593 11 1 6.4921 1.4799 1.6761 12 1 5.3069 0.2665 -0.0570 13 6 3.2190 -2.3482 0.2165 14 8 2.9592 -2.4945 -0.9627 15 6 3.6678 -3.5000 1.0211 16 6 3.0435 -4.7424 0.8757 17 6 3.4653 -5.8148 1.6293 18 6 4.5097 -5.6634 2.5339 19 8 4.9220 -6.7229 3.2751 20 6 5.1297 -4.4284 2.6854 21 6 4.7180 -3.3522 1.9318 22 1 2.9709 0.9304 0.4380 23 1 2.9713 -0.0848 -1.0241 24 1 5.0141 1.1028 4.0100 25 1 2.2316 -4.8608 0.1734 26 1 2.9838 -6.7751 1.5173 27 1 5.6200 -7.2466 2.8582 28 1 5.9379 -4.3139 3.3927 29 1 5.2028 -2.3940 2.0475 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019838767.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:42 Heat of formation + Delta-G solvation = -8.994019 kcal Electronic energy + Delta-G solvation = -17203.606103 eV Core-core repulsion = 14285.870036 eV Total energy + Delta-G solvation = -2917.736068 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.83772 -38.64874 -36.36572 -35.81510 -34.94551 -32.22532 -30.64548 -29.96660 -27.61467 -25.18396 -22.64757 -22.24338 -19.65925 -18.63699 -18.13099 -17.33321 -16.08792 -15.68006 -15.27613 -14.95102 -14.73345 -13.99666 -13.76453 -13.58031 -13.07046 -12.87382 -12.71249 -12.39957 -12.09352 -11.78748 -11.64430 -11.58492 -11.41285 -11.11424 -10.55154 -10.23334 -10.12599 -9.54140 -9.00579 -8.57698 -8.16911 -8.13405 -6.65680 -4.46526 1.36370 1.82428 2.86425 3.03048 3.04750 3.08751 3.34506 3.40955 3.89804 4.10775 4.29887 4.48151 4.55837 4.85570 5.32540 5.33436 5.51764 5.67870 5.82210 5.86004 5.97757 6.16942 6.45792 6.66748 6.80458 6.98540 7.03394 7.20188 7.76668 7.85212 8.05784 8.08452 8.65240 8.95883 9.28506 10.42144 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.021137 B = 0.009154 C = 0.007222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.347989 B = 3058.133615 C = 3876.355885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C 0.215 3.785 3 C 0.188 3.812 4 N -0.459 5.459 5 C -0.352 4.352 6 H 0.108 0.892 7 C 0.071 3.929 8 N -0.852 5.852 9 Si 0.862 3.138 10 H -0.266 1.266 11 H -0.278 1.278 12 H -0.251 1.251 13 C 0.539 3.461 14 O -0.577 6.577 15 C -0.107 4.107 16 C -0.064 4.064 17 C -0.165 4.165 18 C 0.110 3.890 19 O -0.502 6.502 20 C -0.160 4.160 21 C -0.030 4.030 22 H 0.110 0.890 23 H 0.114 0.886 24 H 0.280 0.720 25 H 0.126 0.874 26 H 0.125 0.875 27 H 0.385 0.615 28 H 0.128 0.872 29 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.390 -6.164 -2.943 8.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.128 5.128 2 C -0.104 4.104 3 C 0.062 3.938 4 N -0.181 5.181 5 C -0.479 4.479 6 H 0.126 0.874 7 C -0.138 4.138 8 N -0.485 5.485 9 Si 0.687 3.313 10 H -0.192 1.192 11 H -0.204 1.204 12 H -0.175 1.175 13 C 0.330 3.670 14 O -0.460 6.460 15 C -0.110 4.110 16 C -0.083 4.083 17 C -0.183 4.183 18 C 0.065 3.935 19 O -0.312 6.312 20 C -0.179 4.179 21 C -0.049 4.049 22 H 0.127 0.873 23 H 0.132 0.868 24 H 0.090 0.910 25 H 0.144 0.856 26 H 0.143 0.857 27 H 0.241 0.759 28 H 0.146 0.854 29 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 3.249 -5.879 -2.961 7.340 hybrid contribution 1.190 0.533 -0.502 1.398 sum 4.439 -5.346 -3.463 7.764 Atomic orbital electron populations 1.81023 1.13284 1.08757 1.09747 1.29907 0.95722 0.92693 0.92054 1.19349 0.80937 0.93637 0.99848 1.43480 1.57261 1.05970 1.11413 1.19105 1.29850 1.17819 0.81154 0.87433 1.25507 0.95408 0.96811 0.96093 1.69646 1.35035 1.28385 1.15428 0.87066 0.80349 0.81001 0.82900 1.19242 1.20415 1.17503 1.18432 0.78724 0.83713 0.86141 1.90692 1.54084 1.85251 1.16021 1.19771 0.98678 0.93431 0.99101 1.20991 0.98648 0.91098 0.97582 1.21145 0.99690 0.99557 0.97919 1.18669 0.95286 0.87369 0.92148 1.84765 1.59022 1.41199 1.46210 1.21373 1.02073 0.92664 1.01783 1.21637 0.94116 0.98745 0.90376 0.87301 0.86788 0.90957 0.85579 0.85746 0.75929 0.85440 0.82922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -9.86 18.54 42.15 0.78 -9.08 15 2 C 0.22 4.45 15.71 -20.76 -0.33 4.13 15 3 C 0.19 3.67 4.28 -6.83 -0.03 3.64 15 4 N -0.46 -10.00 1.98 -119.14 -0.24 -10.24 15 5 C -0.35 -8.19 6.61 -15.00 -0.10 -8.29 15 6 H 0.11 2.77 7.49 -52.49 -0.39 2.38 15 7 C 0.07 1.65 5.16 -17.45 -0.09 1.56 15 8 N -0.85 -21.17 13.96 55.50 0.77 -20.40 15 9 Si 0.86 17.13 24.87 -169.99 -4.23 12.91 15 10 H -0.27 -5.05 6.91 56.52 0.39 -4.66 15 11 H -0.28 -5.60 7.11 56.52 0.40 -5.19 15 12 H -0.25 -4.88 7.01 56.52 0.40 -4.48 15 13 C 0.54 11.77 7.21 -12.49 -0.09 11.68 15 14 O -0.58 -13.43 16.61 5.26 0.09 -13.34 15 15 C -0.11 -2.11 5.28 -104.96 -0.55 -2.66 15 16 C -0.06 -1.12 9.65 -39.20 -0.38 -1.50 15 17 C -0.16 -2.52 9.97 -39.50 -0.39 -2.92 15 18 C 0.11 1.68 6.71 -39.01 -0.26 1.42 15 19 O -0.50 -6.56 13.49 -18.86 -0.25 -6.82 15 20 C -0.16 -2.62 9.97 -39.50 -0.39 -3.02 15 21 C -0.03 -0.56 8.09 -39.20 -0.32 -0.88 15 22 H 0.11 2.03 4.30 -51.93 -0.22 1.80 15 23 H 0.11 2.00 7.56 -51.93 -0.39 1.61 15 24 H 0.28 6.49 8.31 -40.82 -0.34 6.15 15 25 H 0.13 2.11 8.06 -52.49 -0.42 1.69 15 26 H 0.12 1.60 8.06 -52.48 -0.42 1.18 15 27 H 0.39 2.95 9.06 45.56 0.41 3.36 15 28 H 0.13 1.86 8.06 -52.48 -0.42 1.44 15 29 H 0.15 3.01 6.27 -52.48 -0.33 2.68 15 LS Contribution 266.28 15.07 4.01 4.01 Total: -1.00 -28.49 266.28 -3.34 -31.83 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -1.34 Total: 7.95 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: -2.93 Total: 3.17 kcal Atomic # 7 Polarization: -41.03 SS G_CDS: 1.32 Total: -39.71 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -0.17 Total: -20.16 kcal Atomic # 14 Polarization: 17.13 SS G_CDS: -4.23 Total: 12.91 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -28.49 -3.34 -31.83 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019838767.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.837 kcal (2) G-P(sol) polarization free energy of solvation -28.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds