Wall clock time and date at job start Mon Mar 30 2020 03:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46507 * 109.47124 * 325.22384 * 3 2 1 5 5 C 1.36898 * 120.00000 * 264.62786 * 4 3 2 6 6 H 1.08000 * 120.00169 * 130.56585 * 5 4 3 7 7 C 1.39020 * 120.00121 * 310.56818 * 5 4 3 8 8 N 1.31384 * 120.00105 * 170.17159 * 7 5 4 9 9 Si 1.86800 * 119.99826 * 350.17302 * 7 5 4 10 10 H 1.48500 * 109.46923 * 95.24022 * 9 7 5 11 11 H 1.48507 * 109.47005 * 215.23583 * 9 7 5 12 12 H 1.48493 * 109.47359 * 335.24021 * 9 7 5 13 13 C 1.34774 * 119.99880 * 84.62976 * 4 3 2 14 14 O 1.21625 * 120.00366 * 2.05819 * 13 4 3 15 15 C 1.47492 * 120.00061 * 182.06131 * 13 4 3 16 16 C 1.39800 * 120.09396 * 137.64855 * 15 13 4 17 17 C 1.37691 * 119.90149 * 180.02562 * 16 15 13 18 18 C 1.39002 * 120.09794 * 0.02889 * 17 16 15 19 19 O 1.35717 * 119.90923 * 179.97438 * 18 17 16 20 20 C 1.39012 * 120.18697 * 0.22879 * 18 17 16 21 21 C 1.37687 * 120.09360 * 359.49124 * 20 18 17 22 22 H 1.08992 * 109.47084 * 205.22641 * 3 2 1 23 23 H 1.08998 * 109.47065 * 85.22346 * 3 2 1 24 24 H 0.97000 * 119.99798 * 179.97438 * 8 7 5 25 25 H 1.08002 * 120.04705 * 0.02562 * 16 15 13 26 26 H 1.08006 * 119.94803 * 180.02562 * 17 16 15 27 27 H 0.96702 * 113.99359 * 89.99944 * 19 18 17 28 28 H 1.08006 * 119.95409 * 179.71979 * 20 18 17 29 29 H 1.08004 * 120.04273 * 180.23142 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0969 -1.1337 0.7878 5 6 3.4296 -0.9600 2.1044 6 1 3.0430 -1.6358 2.8528 7 6 4.2651 0.0864 2.4779 8 7 4.4308 0.3729 3.7494 9 14 5.1521 1.0852 1.1721 10 1 4.3624 2.3033 0.8593 11 1 6.4921 1.4799 1.6761 12 1 5.3069 0.2665 -0.0570 13 6 3.2190 -2.3482 0.2165 14 8 2.9592 -2.4945 -0.9627 15 6 3.6678 -3.5000 1.0211 16 6 3.0435 -4.7424 0.8757 17 6 3.4653 -5.8148 1.6293 18 6 4.5097 -5.6634 2.5339 19 8 4.9220 -6.7229 3.2751 20 6 5.1297 -4.4284 2.6854 21 6 4.7180 -3.3522 1.9318 22 1 2.9709 0.9304 0.4380 23 1 2.9713 -0.0848 -1.0241 24 1 5.0141 1.1028 4.0100 25 1 2.2316 -4.8608 0.1734 26 1 2.9838 -6.7751 1.5173 27 1 5.6200 -7.2466 2.8582 28 1 5.9379 -4.3139 3.3927 29 1 5.2028 -2.3940 2.0475 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019838767.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:42 Heat of formation + Delta-G solvation = -28.517149 kcal Electronic energy + Delta-G solvation = -17204.452690 eV Core-core repulsion = 14285.870036 eV Total energy + Delta-G solvation = -2918.582654 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.36909 -40.01849 -37.88963 -37.22899 -36.67538 -34.01642 -31.97745 -31.37647 -29.16949 -26.93930 -24.05697 -23.57048 -21.26080 -20.34691 -19.29130 -18.91960 -17.69360 -17.36570 -16.57379 -16.33356 -16.22532 -15.60519 -15.37842 -14.97971 -14.59284 -14.40719 -14.30918 -14.04790 -13.69118 -13.29817 -13.14123 -12.93204 -12.86369 -12.75608 -12.16979 -11.84366 -11.37888 -11.21204 -10.71027 -9.98499 -9.82597 -9.50434 -8.44589 -6.30221 0.01222 0.50376 1.28866 1.37591 1.42576 1.52333 1.69733 1.83234 2.23222 2.61939 2.79522 2.88554 3.17106 3.33232 3.95526 4.04217 4.10467 4.15265 4.35338 4.48045 4.65725 4.91324 5.15960 5.32411 5.34464 5.48562 5.61485 5.90483 6.02276 6.16955 6.42281 6.88736 6.92157 7.18216 7.54333 8.66484 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.021137 B = 0.009154 C = 0.007222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.347989 B = 3058.133615 C = 3876.355885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C 0.226 3.774 3 C 0.185 3.815 4 N -0.467 5.467 5 C -0.344 4.344 6 H 0.073 0.927 7 C 0.039 3.961 8 N -0.893 5.893 9 Si 0.910 3.090 10 H -0.245 1.245 11 H -0.280 1.280 12 H -0.243 1.243 13 C 0.537 3.463 14 O -0.596 6.596 15 C -0.140 4.140 16 C -0.069 4.069 17 C -0.158 4.158 18 C 0.127 3.873 19 O -0.504 6.504 20 C -0.165 4.165 21 C -0.039 4.039 22 H 0.122 0.878 23 H 0.139 0.861 24 H 0.283 0.717 25 H 0.129 0.871 26 H 0.156 0.844 27 H 0.413 0.587 28 H 0.143 0.857 29 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.156 -7.016 -3.523 9.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.153 5.153 2 C -0.093 4.093 3 C 0.060 3.940 4 N -0.188 5.188 5 C -0.472 4.472 6 H 0.090 0.910 7 C -0.167 4.167 8 N -0.528 5.528 9 Si 0.732 3.268 10 H -0.170 1.170 11 H -0.206 1.206 12 H -0.166 1.166 13 C 0.328 3.672 14 O -0.480 6.480 15 C -0.143 4.143 16 C -0.088 4.088 17 C -0.176 4.176 18 C 0.082 3.918 19 O -0.317 6.317 20 C -0.184 4.184 21 C -0.058 4.058 22 H 0.139 0.861 23 H 0.156 0.844 24 H 0.094 0.906 25 H 0.147 0.853 26 H 0.173 0.827 27 H 0.273 0.727 28 H 0.161 0.839 29 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 4.020 -6.750 -3.549 8.620 hybrid contribution 0.965 0.621 -0.247 1.174 sum 4.985 -6.129 -3.796 8.765 Atomic orbital electron populations 1.81025 1.14043 1.09543 1.10651 1.30123 0.95912 0.91949 0.91273 1.19604 0.80147 0.93328 1.00950 1.43514 1.57557 1.06716 1.11032 1.18703 1.30028 1.17301 0.81135 0.90971 1.26023 0.95526 0.97549 0.97624 1.69733 1.36201 1.29526 1.17351 0.86295 0.79310 0.80429 0.80744 1.16964 1.20608 1.16605 1.18830 0.77985 0.84219 0.86135 1.90660 1.54996 1.85595 1.16766 1.19798 1.00280 0.93716 1.00504 1.21116 0.98665 0.90897 0.98091 1.21418 0.99290 1.00061 0.96861 1.18662 0.94466 0.87593 0.91057 1.84701 1.60213 1.40601 1.46235 1.21536 1.02607 0.92643 1.01594 1.21466 0.94342 0.98845 0.91163 0.86076 0.84370 0.90643 0.85280 0.82682 0.72660 0.83926 0.84763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -20.54 18.54 20.01 0.37 -20.17 15 2 C 0.23 9.18 15.71 89.44 1.41 10.58 15 3 C 0.19 6.97 4.28 84.57 0.36 7.34 15 4 N -0.47 -20.25 1.98 -649.08 -1.29 -21.53 15 5 C -0.34 -16.27 6.61 84.09 0.56 -15.72 15 6 H 0.07 3.89 7.49 -2.91 -0.02 3.87 15 7 C 0.04 1.80 5.16 84.95 0.44 2.24 15 8 N -0.89 -45.02 13.96 21.68 0.30 -44.72 15 9 Si 0.91 34.21 24.87 68.60 1.71 35.91 15 10 H -0.25 -8.37 6.91 99.48 0.69 -7.69 15 11 H -0.28 -10.62 7.11 99.48 0.71 -9.91 15 12 H -0.24 -8.76 7.01 99.48 0.70 -8.06 15 13 C 0.54 23.45 7.21 86.68 0.63 24.08 15 14 O -0.60 -27.47 16.61 -4.11 -0.07 -27.54 15 15 C -0.14 -5.54 5.28 -20.08 -0.11 -5.65 15 16 C -0.07 -2.34 9.65 22.52 0.22 -2.12 15 17 C -0.16 -4.45 9.97 22.32 0.22 -4.23 15 18 C 0.13 3.58 6.71 22.64 0.15 3.73 15 19 O -0.50 -11.33 13.49 -90.39 -1.22 -12.55 15 20 C -0.17 -5.22 9.97 22.33 0.22 -5.00 15 21 C -0.04 -1.48 8.09 22.52 0.18 -1.30 15 22 H 0.12 4.26 4.30 -2.39 -0.01 4.25 15 23 H 0.14 4.56 7.56 -2.39 -0.02 4.54 15 24 H 0.28 13.27 8.31 -92.71 -0.77 12.50 15 25 H 0.13 4.23 8.06 -2.91 -0.02 4.21 15 26 H 0.16 3.40 8.06 -2.91 -0.02 3.37 15 27 H 0.41 4.61 9.06 -74.06 -0.67 3.93 15 28 H 0.14 3.97 8.06 -2.91 -0.02 3.95 15 29 H 0.13 5.46 6.27 -2.91 -0.02 5.44 15 Total: -1.00 -60.84 266.28 4.60 -56.25 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: 0.51 Total: 20.41 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: 4.28 Total: 13.95 kcal Atomic # 7 Polarization: -85.81 SS G_CDS: -0.61 Total: -86.43 kcal Atomic # 8 Polarization: -38.80 SS G_CDS: -1.29 Total: -40.09 kcal Atomic # 14 Polarization: 34.21 SS G_CDS: 1.71 Total: 35.91 kcal Total: -60.84 4.60 -56.25 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019838767.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.731 kcal (2) G-P(sol) polarization free energy of solvation -60.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds