Wall clock time and date at job start Mon Mar 30 2020 04:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34505 * 124.44008 * 2 1 4 4 O 1.21519 * 125.65330 * 0.02562 * 3 2 1 5 5 C 1.47369 * 108.68411 * 179.97438 * 3 2 1 6 6 C 1.38957 * 134.18208 * 179.97438 * 5 3 2 7 7 C 1.38100 * 119.84606 * 180.02562 * 6 5 3 8 8 C 1.39277 * 120.39293 * 359.97438 * 7 6 5 9 9 N 1.38666 * 119.86752 * 179.97438 * 8 7 6 10 10 C 1.36548 * 120.00100 * 6.46140 * 9 8 7 11 11 H 1.08006 * 119.99637 * 354.39576 * 10 9 8 12 12 C 1.39042 * 120.00391 * 174.38621 * 10 9 8 13 13 N 1.31411 * 119.99941 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00157 * 179.73021 * 12 10 9 15 15 H 1.48496 * 109.47082 * 180.27980 * 14 12 10 16 16 H 1.48504 * 109.46851 * 300.27914 * 14 12 10 17 17 H 1.48502 * 109.47159 * 60.27380 * 14 12 10 18 18 C 1.39662 * 120.26925 * 0.27282 * 8 7 6 19 19 C 1.38201 * 119.63952 * 359.49302 * 18 8 7 20 20 C 1.34530 * 124.43714 * 179.97438 * 2 1 3 21 21 O 1.21467 * 125.75147 * 0.05831 * 20 2 1 22 22 H 1.08996 * 109.47178 * 270.03965 * 1 2 3 23 23 H 1.08998 * 109.46786 * 30.03998 * 1 2 3 24 24 H 1.08994 * 109.46937 * 150.03726 * 1 2 3 25 25 H 1.07996 * 120.07847 * 359.97438 * 6 5 3 26 26 H 1.07995 * 119.80365 * 180.02562 * 7 6 5 27 27 H 0.97002 * 120.00576 * 186.47122 * 9 8 7 28 28 H 0.96997 * 120.00299 * 359.72977 * 13 12 10 29 29 H 1.07998 * 120.17895 * 179.74993 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2257 1.1093 0.0000 4 8 1.8119 2.2519 0.0004 5 6 3.6440 0.7091 0.0006 6 6 4.8466 1.4052 0.0004 7 6 6.0415 0.7128 0.0007 8 6 6.0488 -0.6800 0.0016 9 7 7.2549 -1.3642 0.0013 10 6 8.4287 -0.6790 0.1332 11 1 8.4249 0.4010 0.1467 12 6 9.6287 -1.3715 0.2502 13 7 9.6333 -2.6855 0.2335 14 14 11.2351 -0.4340 0.4230 15 1 12.3615 -1.3964 0.5233 16 1 11.4311 0.4354 -0.7649 17 1 11.1896 0.4045 1.6478 18 6 4.8463 -1.3903 -0.0034 19 6 3.6470 -0.7037 0.0013 20 6 2.2258 -1.1095 0.0005 21 8 1.8141 -2.2523 0.0000 22 1 -0.3633 0.0007 1.0276 23 1 -0.3633 0.8896 -0.5145 24 1 -0.3633 -0.8903 -0.5132 25 1 4.8470 2.4852 -0.0007 26 1 6.9758 1.2545 0.0010 27 1 7.2649 -2.3296 -0.0927 28 1 8.7992 -3.1724 0.1434 29 1 4.8537 -2.4702 -0.0067 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020043620.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:21 Heat of formation + Delta-G solvation = -35.470959 kcal Electronic energy + Delta-G solvation = -16786.398962 eV Core-core repulsion = 13867.514768 eV Total energy + Delta-G solvation = -2918.884194 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.05034 -39.98039 -39.57443 -37.38747 -36.58423 -34.08958 -32.29854 -30.98767 -27.93810 -26.92419 -25.48509 -23.86312 -22.73863 -20.83577 -20.04180 -18.85526 -18.20540 -17.87827 -17.69524 -16.84690 -16.31145 -15.90540 -15.44649 -15.00173 -14.89416 -14.75036 -14.56615 -14.09267 -13.78986 -13.56769 -13.48946 -12.88369 -12.47102 -12.06352 -11.94120 -11.89066 -11.34771 -11.24910 -10.88543 -10.72982 -10.05320 -9.12079 -8.88791 -5.96566 -0.74929 0.35825 1.20944 1.47413 1.58869 1.68456 1.82184 2.01578 2.33981 2.74977 2.75931 3.11589 3.15115 3.57642 3.91296 4.21149 4.28754 4.41202 4.48059 4.60377 4.69494 4.75010 4.84890 5.13088 5.23906 5.37169 5.53317 5.72728 5.82450 5.91689 6.25638 6.31276 6.77525 7.06437 7.12215 8.31709 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.045258 B = 0.005273 C = 0.004740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.533084 B = 5308.405116 C = 5906.240545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.581 5.581 3 C 0.586 3.414 4 O -0.520 6.520 5 C -0.304 4.304 6 C 0.035 3.965 7 C -0.225 4.225 8 C 0.201 3.799 9 N -0.548 5.548 10 C -0.393 4.393 11 H 0.118 0.882 12 C -0.042 4.042 13 N -0.899 5.899 14 Si 1.133 2.867 15 H -0.285 1.285 16 H -0.261 1.261 17 H -0.263 1.263 18 C -0.142 4.142 19 C -0.097 4.097 20 C 0.582 3.418 21 O -0.504 6.504 22 H 0.084 0.916 23 H 0.097 0.903 24 H 0.095 0.905 25 H 0.145 0.855 26 H 0.135 0.865 27 H 0.387 0.613 28 H 0.263 0.737 29 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.888 5.165 -0.397 9.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.323 5.323 3 C 0.382 3.618 4 O -0.397 6.397 5 C -0.313 4.313 6 C 0.014 3.986 7 C -0.250 4.250 8 C 0.076 3.924 9 N -0.147 5.147 10 C -0.522 4.522 11 H 0.135 0.865 12 C -0.243 4.243 13 N -0.533 5.533 14 Si 0.952 3.048 15 H -0.210 1.210 16 H -0.186 1.186 17 H -0.187 1.187 18 C -0.165 4.165 19 C -0.102 4.102 20 C 0.373 3.627 21 O -0.378 6.378 22 H 0.103 0.897 23 H 0.116 0.884 24 H 0.114 0.886 25 H 0.163 0.837 26 H 0.153 0.847 27 H 0.221 0.779 28 H 0.074 0.926 29 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.458 4.937 -0.217 8.132 hybrid contribution -1.805 -0.762 -0.222 1.972 sum -8.263 4.175 -0.439 9.269 Atomic orbital electron populations 1.22090 0.74226 1.05435 1.04720 1.46428 1.10077 1.07901 1.67852 1.18287 0.86960 0.83313 0.73213 1.90704 1.80135 1.20140 1.48699 1.19689 0.93071 0.93634 1.24916 1.20356 0.88637 0.99899 0.89705 1.20611 0.98414 0.91639 1.14362 1.17979 0.84878 0.92675 0.96870 1.41092 1.03702 1.08482 1.61428 1.21113 0.85351 0.95594 1.50153 0.86458 1.28118 1.05971 0.96385 0.93817 1.70960 1.30437 1.07793 1.44151 0.82630 0.69642 0.73886 0.78682 1.21046 1.18605 1.18725 1.19933 0.89033 0.99300 1.08204 1.19936 0.92175 0.95055 1.03050 1.18495 0.87076 0.83688 0.73454 1.90728 1.80148 1.20302 1.46670 0.89719 0.88416 0.88617 0.83713 0.84722 0.77854 0.92585 0.85389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.62 10.77 127.77 1.38 3.00 15 2 N -0.58 -17.93 3.02 -786.88 -2.38 -20.30 15 3 C 0.59 20.15 8.00 86.69 0.69 20.85 15 4 O -0.52 -19.25 17.68 -3.77 -0.07 -19.32 15 5 C -0.30 -10.82 6.41 -19.95 -0.13 -10.95 15 6 C 0.03 1.16 10.08 22.41 0.23 1.39 15 7 C -0.23 -8.24 9.28 22.49 0.21 -8.03 15 8 C 0.20 7.93 6.61 38.66 0.26 8.18 15 9 N -0.55 -23.51 5.38 -184.20 -0.99 -24.50 15 10 C -0.39 -17.69 9.54 84.15 0.80 -16.89 15 11 H 0.12 4.96 5.67 -2.91 -0.02 4.94 15 12 C -0.04 -1.91 5.50 84.95 0.47 -1.44 15 13 N -0.90 -45.13 13.68 21.68 0.30 -44.83 15 14 Si 1.13 40.01 29.92 68.60 2.05 42.06 15 15 H -0.29 -10.51 7.11 99.48 0.71 -9.80 15 16 H -0.26 -8.47 7.11 99.48 0.71 -7.76 15 17 H -0.26 -8.56 7.11 99.48 0.71 -7.85 15 18 C -0.14 -5.28 9.94 22.61 0.22 -5.05 15 19 C -0.10 -3.53 6.40 -20.01 -0.13 -3.66 15 20 C 0.58 20.22 8.02 86.81 0.70 20.92 15 21 O -0.50 -18.93 17.68 -3.61 -0.06 -19.00 15 22 H 0.08 1.58 8.14 -2.39 -0.02 1.56 15 23 H 0.10 1.89 7.96 -2.39 -0.02 1.87 15 24 H 0.10 1.86 7.96 -2.39 -0.02 1.84 15 25 H 0.15 4.10 8.06 -2.91 -0.02 4.08 15 26 H 0.14 4.76 5.93 -2.91 -0.02 4.75 15 27 H 0.39 16.41 6.75 -92.71 -0.63 15.79 15 28 H 0.26 12.96 6.79 -92.71 -0.63 12.33 15 29 H 0.13 4.49 8.06 -2.91 -0.02 4.46 15 Total: -1.00 -55.65 264.56 4.27 -51.38 By element: Atomic # 1 Polarization: 25.47 SS G_CDS: 0.73 Total: 26.20 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: 4.70 Total: 8.31 kcal Atomic # 7 Polarization: -86.57 SS G_CDS: -3.07 Total: -89.64 kcal Atomic # 8 Polarization: -38.18 SS G_CDS: -0.13 Total: -38.31 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 2.05 Total: 42.06 kcal Total: -55.65 4.27 -51.38 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020043620.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.906 kcal (2) G-P(sol) polarization free energy of solvation -55.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds